Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03375 and MPMX19_03376 are separated by 136 nucleotides MPMX19_03376 and MPMX19_03377 are separated by 148 nucleotides
MPMX19_03375: MPMX19_03375 - Outer membrane protein TolC, at 753,136 to 754,560
_03375
MPMX19_03376: MPMX19_03376 - hypothetical protein, at 754,697 to 760,675
_03376
MPMX19_03377: MPMX19_03377 - D-allose transport system permease protein AlsC, at 760,824 to 761,873
_03377
Position (kb) 754
755
756
757
758
759
760
761 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 753.713 kb on + strand, within MPMX19_03375 at 753.713 kb on + strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.714 kb on - strand, within MPMX19_03375 at 753.732 kb on - strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.917 kb on + strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 753.918 kb on - strand, within MPMX19_03375 at 754.018 kb on - strand, within MPMX19_03375 at 754.028 kb on + strand, within MPMX19_03375 at 754.133 kb on + strand, within MPMX19_03375 at 754.134 kb on - strand, within MPMX19_03375 at 754.134 kb on - strand, within MPMX19_03375 at 754.365 kb on - strand, within MPMX19_03375 at 754.554 kb on + strand at 754.554 kb on + strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.555 kb on - strand at 754.595 kb on - strand at 754.595 kb on - strand at 754.595 kb on - strand at 754.620 kb on - strand at 754.620 kb on - strand at 754.633 kb on + strand at 754.633 kb on + strand at 754.634 kb on - strand at 754.634 kb on - strand at 754.634 kb on - strand at 754.635 kb on + strand at 754.635 kb on + strand at 754.635 kb on + strand at 754.636 kb on - strand at 754.636 kb on - strand at 754.636 kb on - strand at 754.636 kb on - strand at 754.643 kb on + strand at 754.669 kb on - strand at 754.671 kb on + strand at 754.671 kb on + strand at 754.698 kb on + strand at 754.712 kb on - strand at 754.729 kb on + strand at 754.729 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.817 kb on + strand at 754.818 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 754.820 kb on - strand at 755.092 kb on + strand at 755.613 kb on + strand, within MPMX19_03376 at 755.614 kb on - strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.856 kb on + strand, within MPMX19_03376 at 755.857 kb on - strand, within MPMX19_03376 at 755.857 kb on - strand, within MPMX19_03376 at 755.857 kb on - strand, within MPMX19_03376 at 756.066 kb on + strand, within MPMX19_03376 at 756.066 kb on + strand, within MPMX19_03376 at 756.066 kb on + strand, within MPMX19_03376 at 756.067 kb on - strand, within MPMX19_03376 at 756.067 kb on - strand, within MPMX19_03376 at 756.171 kb on + strand, within MPMX19_03376 at 756.171 kb on + strand, within MPMX19_03376 at 756.474 kb on + strand, within MPMX19_03376 at 756.474 kb on + strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.475 kb on - strand, within MPMX19_03376 at 756.488 kb on - strand, within MPMX19_03376 at 756.488 kb on - strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.489 kb on + strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.490 kb on - strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.798 kb on + strand, within MPMX19_03376 at 756.799 kb on - strand, within MPMX19_03376 at 756.799 kb on - strand, within MPMX19_03376 at 756.799 kb on - strand, within MPMX19_03376 at 756.933 kb on - strand, within MPMX19_03376 at 756.933 kb on - strand, within MPMX19_03376 at 756.933 kb on - strand, within MPMX19_03376 at 757.011 kb on + strand, within MPMX19_03376 at 757.011 kb on + strand, within MPMX19_03376 at 757.012 kb on - strand, within MPMX19_03376 at 757.415 kb on + strand, within MPMX19_03376 at 757.415 kb on + strand, within MPMX19_03376 at 757.476 kb on + strand, within MPMX19_03376 at 757.477 kb on - strand, within MPMX19_03376 at 757.477 kb on - strand, within MPMX19_03376 at 757.477 kb on - strand, within MPMX19_03376 at 757.655 kb on - strand, within MPMX19_03376 at 757.731 kb on + strand, within MPMX19_03376 at 757.731 kb on + strand, within MPMX19_03376 at 757.731 kb on + strand, within MPMX19_03376 at 757.732 kb on - strand, within MPMX19_03376 at 757.732 kb on - strand, within MPMX19_03376 at 757.732 kb on - strand, within MPMX19_03376 at 757.948 kb on - strand, within MPMX19_03376 at 757.948 kb on - strand, within MPMX19_03376 at 757.948 kb on - strand, within MPMX19_03376 at 757.948 kb on - strand, within MPMX19_03376 at 758.421 kb on + strand, within MPMX19_03376 at 758.421 kb on + strand, within MPMX19_03376 at 758.421 kb on + strand, within MPMX19_03376 at 758.421 kb on + strand, within MPMX19_03376 at 758.422 kb on - strand, within MPMX19_03376 at 758.422 kb on - strand, within MPMX19_03376 at 759.065 kb on - strand, within MPMX19_03376 at 760.720 kb on + strand at 760.720 kb on + strand at 760.721 kb on - strand at 760.747 kb on + strand at 760.772 kb on - strand at 760.788 kb on + strand at 760.909 kb on + strand at 760.909 kb on + strand at 760.910 kb on - strand at 760.910 kb on - strand at 760.910 kb on - strand at 760.910 kb on - strand at 760.910 kb on - strand at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.137 kb on + strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.138 kb on - strand, within MPMX19_03377 at 761.209 kb on + strand, within MPMX19_03377 at 761.209 kb on + strand, within MPMX19_03377 at 761.209 kb on + strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.210 kb on - strand, within MPMX19_03377 at 761.662 kb on + strand, within MPMX19_03377 at 761.662 kb on + strand, within MPMX19_03377 at 761.662 kb on + strand, within MPMX19_03377 at 761.663 kb on - strand, within MPMX19_03377
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 753,713 + MPMX19_03375 0.40 -1.9 753,713 + MPMX19_03375 0.40 -0.1 753,714 - MPMX19_03375 0.41 -0.1 753,714 - MPMX19_03375 0.41 -0.0 753,714 - MPMX19_03375 0.41 +0.2 753,714 - MPMX19_03375 0.41 +0.4 753,732 - MPMX19_03375 0.42 +0.1 753,917 + MPMX19_03375 0.55 -1.8 753,917 + MPMX19_03375 0.55 -0.1 753,917 + MPMX19_03375 0.55 +0.6 753,917 + MPMX19_03375 0.55 -3.6 753,918 - MPMX19_03375 0.55 +0.6 753,918 - MPMX19_03375 0.55 -0.9 753,918 - MPMX19_03375 0.55 -0.8 754,018 - MPMX19_03375 0.62 -0.0 754,028 + MPMX19_03375 0.63 -2.4 754,133 + MPMX19_03375 0.70 +1.8 754,134 - MPMX19_03375 0.70 +1.7 754,134 - MPMX19_03375 0.70 -0.6 754,365 - MPMX19_03375 0.86 +0.0 754,554 + -1.2 754,554 + +0.2 754,555 - -0.5 754,555 - -0.1 754,555 - +1.7 754,555 - -0.9 754,555 - -0.1 754,555 - -0.5 754,595 - -1.3 754,595 - -0.9 754,595 - +1.9 754,620 - +0.7 754,620 - +0.1 754,633 + +1.1 754,633 + -1.3 754,634 - +0.1 754,634 - +1.7 754,634 - +1.0 754,635 + -0.1 754,635 + -0.8 754,635 + -1.0 754,636 - -1.5 754,636 - +1.1 754,636 - -0.0 754,636 - +1.1 754,643 + -0.2 754,669 - -0.4 754,671 + -0.1 754,671 + +0.9 754,698 + +0.8 754,712 - -0.6 754,729 + +0.1 754,729 + -0.8 754,817 + -0.1 754,817 + +0.1 754,817 + -0.5 754,817 + -0.7 754,817 + -1.3 754,818 - +0.4 754,820 - -0.1 754,820 - -0.1 754,820 - +0.1 754,820 - -0.6 754,820 - -1.1 755,092 + -0.6 755,613 + MPMX19_03376 0.15 -0.3 755,614 - MPMX19_03376 0.15 -0.8 755,856 + MPMX19_03376 0.19 -0.7 755,856 + MPMX19_03376 0.19 +0.7 755,856 + MPMX19_03376 0.19 -0.1 755,856 + MPMX19_03376 0.19 +1.5 755,856 + MPMX19_03376 0.19 -1.3 755,856 + MPMX19_03376 0.19 -0.8 755,856 + MPMX19_03376 0.19 -0.1 755,856 + MPMX19_03376 0.19 +0.1 755,856 + MPMX19_03376 0.19 -1.1 755,856 + MPMX19_03376 0.19 -1.7 755,856 + MPMX19_03376 0.19 +0.1 755,857 - MPMX19_03376 0.19 -0.5 755,857 - MPMX19_03376 0.19 -1.5 755,857 - MPMX19_03376 0.19 -0.0 756,066 + MPMX19_03376 0.23 -0.4 756,066 + MPMX19_03376 0.23 +0.7 756,066 + MPMX19_03376 0.23 -0.1 756,067 - MPMX19_03376 0.23 +0.2 756,067 - MPMX19_03376 0.23 +1.0 756,171 + MPMX19_03376 0.25 +0.4 756,171 + MPMX19_03376 0.25 -1.1 756,474 + MPMX19_03376 0.30 -0.6 756,474 + MPMX19_03376 0.30 +0.3 756,475 - MPMX19_03376 0.30 -1.4 756,475 - MPMX19_03376 0.30 +0.8 756,475 - MPMX19_03376 0.30 +1.5 756,475 - MPMX19_03376 0.30 -0.4 756,475 - MPMX19_03376 0.30 -0.9 756,488 - MPMX19_03376 0.30 +0.1 756,488 - MPMX19_03376 0.30 -0.3 756,489 + MPMX19_03376 0.30 +0.6 756,489 + MPMX19_03376 0.30 -1.4 756,489 + MPMX19_03376 0.30 +0.5 756,489 + MPMX19_03376 0.30 -0.2 756,489 + MPMX19_03376 0.30 +0.2 756,489 + MPMX19_03376 0.30 -1.3 756,489 + MPMX19_03376 0.30 -1.0 756,489 + MPMX19_03376 0.30 -0.3 756,489 + MPMX19_03376 0.30 +0.1 756,489 + MPMX19_03376 0.30 +0.4 756,490 - MPMX19_03376 0.30 -0.3 756,490 - MPMX19_03376 0.30 -0.8 756,490 - MPMX19_03376 0.30 -1.2 756,490 - MPMX19_03376 0.30 +0.2 756,490 - MPMX19_03376 0.30 -0.1 756,490 - MPMX19_03376 0.30 -1.2 756,490 - MPMX19_03376 0.30 -1.2 756,490 - MPMX19_03376 0.30 +0.0 756,798 + MPMX19_03376 0.35 +0.3 756,798 + MPMX19_03376 0.35 -0.8 756,798 + MPMX19_03376 0.35 -1.1 756,798 + MPMX19_03376 0.35 -0.5 756,798 + MPMX19_03376 0.35 -1.5 756,798 + MPMX19_03376 0.35 -0.5 756,798 + MPMX19_03376 0.35 -0.4 756,798 + MPMX19_03376 0.35 +0.4 756,798 + MPMX19_03376 0.35 -0.6 756,798 + MPMX19_03376 0.35 -0.6 756,798 + MPMX19_03376 0.35 -1.9 756,798 + MPMX19_03376 0.35 +1.2 756,799 - MPMX19_03376 0.35 +0.7 756,799 - MPMX19_03376 0.35 +1.4 756,799 - MPMX19_03376 0.35 +0.3 756,933 - MPMX19_03376 0.37 -1.3 756,933 - MPMX19_03376 0.37 -0.2 756,933 - MPMX19_03376 0.37 -2.3 757,011 + MPMX19_03376 0.39 +0.7 757,011 + MPMX19_03376 0.39 +0.2 757,012 - MPMX19_03376 0.39 -0.9 757,415 + MPMX19_03376 0.45 -0.4 757,415 + MPMX19_03376 0.45 +0.3 757,476 + MPMX19_03376 0.46 -0.0 757,477 - MPMX19_03376 0.46 +0.6 757,477 - MPMX19_03376 0.46 +0.3 757,477 - MPMX19_03376 0.46 -0.3 757,655 - MPMX19_03376 0.49 -0.0 757,731 + MPMX19_03376 0.51 -1.5 757,731 + MPMX19_03376 0.51 -0.2 757,731 + MPMX19_03376 0.51 -1.3 757,732 - MPMX19_03376 0.51 -0.4 757,732 - MPMX19_03376 0.51 -1.3 757,732 - MPMX19_03376 0.51 -0.3 757,948 - MPMX19_03376 0.54 -1.4 757,948 - MPMX19_03376 0.54 -0.5 757,948 - MPMX19_03376 0.54 -0.2 757,948 - MPMX19_03376 0.54 -0.8 758,421 + MPMX19_03376 0.62 +0.4 758,421 + MPMX19_03376 0.62 -1.3 758,421 + MPMX19_03376 0.62 -0.1 758,421 + MPMX19_03376 0.62 -1.2 758,422 - MPMX19_03376 0.62 -1.3 758,422 - MPMX19_03376 0.62 -0.4 759,065 - MPMX19_03376 0.73 -0.9 760,720 + +0.3 760,720 + -0.6 760,721 - -1.4 760,747 + +0.5 760,772 - -0.1 760,788 + -1.1 760,909 + +0.5 760,909 + -1.3 760,910 - -0.2 760,910 - -0.5 760,910 - +0.7 760,910 - -0.6 760,910 - -1.0 761,137 + MPMX19_03377 0.30 +0.2 761,137 + MPMX19_03377 0.30 +0.4 761,137 + MPMX19_03377 0.30 -0.8 761,137 + MPMX19_03377 0.30 -0.3 761,137 + MPMX19_03377 0.30 -1.5 761,137 + MPMX19_03377 0.30 -0.5 761,137 + MPMX19_03377 0.30 +1.0 761,137 + MPMX19_03377 0.30 +0.8 761,137 + MPMX19_03377 0.30 +0.7 761,137 + MPMX19_03377 0.30 +0.4 761,137 + MPMX19_03377 0.30 -1.1 761,137 + MPMX19_03377 0.30 +0.4 761,137 + MPMX19_03377 0.30 -1.8 761,138 - MPMX19_03377 0.30 +1.0 761,138 - MPMX19_03377 0.30 -0.5 761,138 - MPMX19_03377 0.30 -0.5 761,138 - MPMX19_03377 0.30 +0.1 761,138 - MPMX19_03377 0.30 +0.1 761,138 - MPMX19_03377 0.30 -1.1 761,138 - MPMX19_03377 0.30 +0.6 761,138 - MPMX19_03377 0.30 -0.0 761,138 - MPMX19_03377 0.30 -1.9 761,138 - MPMX19_03377 0.30 -0.6 761,138 - MPMX19_03377 0.30 -2.1 761,138 - MPMX19_03377 0.30 -0.5 761,209 + MPMX19_03377 0.37 -0.2 761,209 + MPMX19_03377 0.37 -0.4 761,209 + MPMX19_03377 0.37 +0.4 761,210 - MPMX19_03377 0.37 -1.8 761,210 - MPMX19_03377 0.37 +0.2 761,210 - MPMX19_03377 0.37 +0.6 761,210 - MPMX19_03377 0.37 -1.0 761,210 - MPMX19_03377 0.37 -0.1 761,210 - MPMX19_03377 0.37 -0.6 761,210 - MPMX19_03377 0.37 +0.2 761,662 + MPMX19_03377 0.80 +0.3 761,662 + MPMX19_03377 0.80 -0.3 761,662 + MPMX19_03377 0.80 +0.2 761,663 - MPMX19_03377 0.80 +0.8
Or see this region's nucleotide sequence