Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03345 and MPMX19_03346 are separated by 144 nucleotides MPMX19_03346 and MPMX19_03347 overlap by 16 nucleotides
MPMX19_03345: MPMX19_03345 - Phenylacetaldehyde dehydrogenase, at 703,239 to 704,654
_03345
MPMX19_03346: MPMX19_03346 - hypothetical protein, at 704,799 to 705,449
_03346
MPMX19_03347: MPMX19_03347 - Putative multidrug export ATP-binding/permease protein, at 705,434 to 707,137
_03347
Position (kb) 704
705
706 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 703.810 kb on + strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 703.811 kb on - strand, within MPMX19_03345 at 704.348 kb on + strand, within MPMX19_03345 at 704.348 kb on + strand, within MPMX19_03345 at 704.348 kb on + strand, within MPMX19_03345 at 704.350 kb on + strand, within MPMX19_03345 at 704.350 kb on + strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.351 kb on - strand, within MPMX19_03345 at 704.644 kb on + strand at 704.644 kb on + strand at 704.645 kb on - strand at 704.645 kb on - strand at 704.645 kb on - strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.711 kb on + strand at 704.712 kb on - strand at 704.712 kb on - strand at 704.712 kb on - strand at 704.712 kb on - strand at 704.712 kb on - strand at 704.712 kb on - strand at 705.502 kb on - strand at 705.981 kb on + strand, within MPMX19_03347 at 705.981 kb on + strand, within MPMX19_03347 at 705.981 kb on + strand, within MPMX19_03347 at 705.981 kb on + strand, within MPMX19_03347 at 705.982 kb on - strand, within MPMX19_03347 at 705.982 kb on - strand, within MPMX19_03347 at 705.982 kb on - strand, within MPMX19_03347 at 706.293 kb on + strand, within MPMX19_03347 at 706.293 kb on + strand, within MPMX19_03347 at 706.293 kb on + strand, within MPMX19_03347 at 706.294 kb on - strand, within MPMX19_03347
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 703,810 + MPMX19_03345 0.40 -2.4 703,811 - MPMX19_03345 0.40 -0.9 703,811 - MPMX19_03345 0.40 -1.3 703,811 - MPMX19_03345 0.40 -0.9 703,811 - MPMX19_03345 0.40 +0.6 703,811 - MPMX19_03345 0.40 -1.4 704,348 + MPMX19_03345 0.78 -0.4 704,348 + MPMX19_03345 0.78 -0.1 704,348 + MPMX19_03345 0.78 -0.9 704,350 + MPMX19_03345 0.78 -2.7 704,350 + MPMX19_03345 0.78 -3.6 704,351 - MPMX19_03345 0.79 -0.3 704,351 - MPMX19_03345 0.79 -0.9 704,351 - MPMX19_03345 0.79 -1.6 704,351 - MPMX19_03345 0.79 +1.1 704,351 - MPMX19_03345 0.79 +0.1 704,351 - MPMX19_03345 0.79 -1.1 704,351 - MPMX19_03345 0.79 -1.2 704,351 - MPMX19_03345 0.79 -0.4 704,644 + -0.1 704,644 + -0.3 704,645 - +1.1 704,645 - -1.0 704,645 - -0.2 704,711 + -2.4 704,711 + -0.4 704,711 + -1.3 704,711 + +0.6 704,711 + -2.3 704,711 + +0.3 704,712 - +0.1 704,712 - -0.5 704,712 - -1.1 704,712 - -0.1 704,712 - +0.4 704,712 - -1.7 705,502 - -1.3 705,981 + MPMX19_03347 0.32 -0.4 705,981 + MPMX19_03347 0.32 -0.2 705,981 + MPMX19_03347 0.32 +0.1 705,981 + MPMX19_03347 0.32 -0.4 705,982 - MPMX19_03347 0.32 -0.1 705,982 - MPMX19_03347 0.32 -0.7 705,982 - MPMX19_03347 0.32 -0.8 706,293 + MPMX19_03347 0.50 -0.9 706,293 + MPMX19_03347 0.50 +0.9 706,293 + MPMX19_03347 0.50 +0.7 706,294 - MPMX19_03347 0.50 -0.2
Or see this region's nucleotide sequence