Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03327 and MPMX19_03328 overlap by 50 nucleotides MPMX19_03328 and MPMX19_03329 are separated by 63 nucleotides MPMX19_03329 and MPMX19_03330 are separated by 606 nucleotides
MPMX19_03327: MPMX19_03327 - hypothetical protein, at 678,319 to 678,723
_03327
MPMX19_03328: MPMX19_03328 - hypothetical protein, at 678,674 to 679,411
_03328
MPMX19_03329: MPMX19_03329 - hypothetical protein, at 679,475 to 679,906
_03329
MPMX19_03330: MPMX19_03330 - hypothetical protein, at 680,513 to 683,845
_03330
Position (kb) 679
680 Strain fitness (log2 ratio) -2
-1
0
1
2 at 678.478 kb on + strand, within MPMX19_03327 at 678.478 kb on + strand, within MPMX19_03327 at 678.479 kb on - strand, within MPMX19_03327 at 678.488 kb on - strand, within MPMX19_03327 at 678.550 kb on + strand, within MPMX19_03327 at 678.551 kb on - strand, within MPMX19_03327 at 678.559 kb on + strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.560 kb on - strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.616 kb on + strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.617 kb on - strand, within MPMX19_03327 at 678.834 kb on + strand, within MPMX19_03328 at 678.834 kb on + strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.835 kb on - strand, within MPMX19_03328 at 678.840 kb on + strand, within MPMX19_03328 at 678.840 kb on + strand, within MPMX19_03328 at 678.841 kb on - strand, within MPMX19_03328 at 678.841 kb on - strand, within MPMX19_03328 at 678.921 kb on + strand, within MPMX19_03328 at 678.921 kb on + strand, within MPMX19_03328 at 679.002 kb on + strand, within MPMX19_03328 at 679.002 kb on + strand, within MPMX19_03328 at 679.002 kb on + strand, within MPMX19_03328 at 679.002 kb on + strand, within MPMX19_03328 at 679.003 kb on - strand, within MPMX19_03328 at 679.003 kb on - strand, within MPMX19_03328 at 679.003 kb on - strand, within MPMX19_03328 at 679.294 kb on - strand, within MPMX19_03328 at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.400 kb on + strand at 679.401 kb on - strand at 679.401 kb on - strand at 679.401 kb on - strand at 679.401 kb on - strand at 679.401 kb on - strand at 679.405 kb on + strand at 679.405 kb on + strand at 679.406 kb on - strand at 679.728 kb on + strand, within MPMX19_03329 at 679.729 kb on - strand, within MPMX19_03329 at 679.729 kb on - strand, within MPMX19_03329 at 679.831 kb on + strand, within MPMX19_03329 at 679.832 kb on - strand, within MPMX19_03329 at 679.833 kb on + strand, within MPMX19_03329 at 679.833 kb on + strand, within MPMX19_03329 at 679.833 kb on + strand, within MPMX19_03329 at 679.834 kb on - strand, within MPMX19_03329 at 679.834 kb on - strand, within MPMX19_03329 at 679.834 kb on - strand, within MPMX19_03329 at 679.938 kb on - strand at 679.938 kb on - strand at 679.938 kb on - strand at 679.959 kb on + strand at 679.960 kb on - strand at 679.960 kb on - strand at 680.039 kb on - strand at 680.065 kb on + strand at 680.065 kb on + strand at 680.065 kb on + strand at 680.066 kb on - strand at 680.066 kb on - strand at 680.066 kb on - strand at 680.066 kb on - strand at 680.066 kb on - strand at 680.102 kb on + strand at 680.103 kb on - strand at 680.273 kb on - strand at 680.333 kb on - strand at 680.376 kb on + strand at 680.377 kb on - strand at 680.377 kb on - strand at 680.810 kb on + strand at 680.810 kb on + strand at 680.811 kb on - strand at 680.811 kb on - strand at 680.811 kb on - strand at 680.882 kb on + strand, within MPMX19_03330 at 680.882 kb on + strand, within MPMX19_03330 at 680.882 kb on + strand, within MPMX19_03330 at 680.883 kb on - strand, within MPMX19_03330 at 680.883 kb on - strand, within MPMX19_03330 at 680.883 kb on - strand, within MPMX19_03330 at 680.883 kb on - strand, within MPMX19_03330
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 678,478 + MPMX19_03327 0.39 -0.4 678,478 + MPMX19_03327 0.39 -1.1 678,479 - MPMX19_03327 0.40 -1.3 678,488 - MPMX19_03327 0.42 +0.5 678,550 + MPMX19_03327 0.57 -1.1 678,551 - MPMX19_03327 0.57 -1.3 678,559 + MPMX19_03327 0.59 +0.2 678,560 - MPMX19_03327 0.60 -1.3 678,560 - MPMX19_03327 0.60 +0.5 678,560 - MPMX19_03327 0.60 +1.5 678,560 - MPMX19_03327 0.60 +0.2 678,560 - MPMX19_03327 0.60 -0.0 678,616 + MPMX19_03327 0.73 -0.8 678,616 + MPMX19_03327 0.73 -1.8 678,616 + MPMX19_03327 0.73 -1.4 678,616 + MPMX19_03327 0.73 -2.0 678,616 + MPMX19_03327 0.73 -0.3 678,616 + MPMX19_03327 0.73 +0.5 678,616 + MPMX19_03327 0.73 +0.4 678,616 + MPMX19_03327 0.73 +1.1 678,617 - MPMX19_03327 0.74 +0.1 678,617 - MPMX19_03327 0.74 +2.0 678,617 - MPMX19_03327 0.74 -0.9 678,617 - MPMX19_03327 0.74 -0.6 678,617 - MPMX19_03327 0.74 +0.4 678,834 + MPMX19_03328 0.22 +0.1 678,834 + MPMX19_03328 0.22 +0.5 678,835 - MPMX19_03328 0.22 +0.9 678,835 - MPMX19_03328 0.22 -0.8 678,835 - MPMX19_03328 0.22 +1.5 678,835 - MPMX19_03328 0.22 -1.3 678,835 - MPMX19_03328 0.22 -0.1 678,835 - MPMX19_03328 0.22 +0.4 678,840 + MPMX19_03328 0.22 -0.2 678,840 + MPMX19_03328 0.22 -1.4 678,841 - MPMX19_03328 0.23 +0.3 678,841 - MPMX19_03328 0.23 -0.5 678,921 + MPMX19_03328 0.33 -1.2 678,921 + MPMX19_03328 0.33 -0.9 679,002 + MPMX19_03328 0.44 -1.9 679,002 + MPMX19_03328 0.44 +0.1 679,002 + MPMX19_03328 0.44 -0.1 679,002 + MPMX19_03328 0.44 -1.3 679,003 - MPMX19_03328 0.45 -0.5 679,003 - MPMX19_03328 0.45 +0.5 679,003 - MPMX19_03328 0.45 -1.9 679,294 - MPMX19_03328 0.84 -0.7 679,400 + -0.3 679,400 + -0.3 679,400 + -0.6 679,400 + -0.7 679,400 + -0.6 679,400 + -0.3 679,400 + -0.8 679,401 - -0.6 679,401 - -0.8 679,401 - -0.1 679,401 - -0.0 679,401 - -0.3 679,405 + -0.1 679,405 + -1.1 679,406 - -0.4 679,728 + MPMX19_03329 0.59 -0.4 679,729 - MPMX19_03329 0.59 -0.9 679,729 - MPMX19_03329 0.59 -1.1 679,831 + MPMX19_03329 0.82 -0.8 679,832 - MPMX19_03329 0.83 +0.1 679,833 + MPMX19_03329 0.83 +0.1 679,833 + MPMX19_03329 0.83 +0.4 679,833 + MPMX19_03329 0.83 -2.1 679,834 - MPMX19_03329 0.83 -1.5 679,834 - MPMX19_03329 0.83 -0.8 679,834 - MPMX19_03329 0.83 -1.8 679,938 - -0.2 679,938 - -1.5 679,938 - +0.7 679,959 + -1.3 679,960 - -0.0 679,960 - -0.5 680,039 - +0.1 680,065 + -0.3 680,065 + -1.6 680,065 + -1.2 680,066 - -0.1 680,066 - -1.3 680,066 - +0.8 680,066 - -0.6 680,066 - -0.3 680,102 + -0.0 680,103 - -0.9 680,273 - -0.8 680,333 - -0.9 680,376 + -0.3 680,377 - -0.9 680,377 - -1.1 680,810 + -1.0 680,810 + -0.8 680,811 - -0.5 680,811 - -1.2 680,811 - +1.0 680,882 + MPMX19_03330 0.11 -0.2 680,882 + MPMX19_03330 0.11 -0.4 680,882 + MPMX19_03330 0.11 -1.4 680,883 - MPMX19_03330 0.11 +0.9 680,883 - MPMX19_03330 0.11 -0.9 680,883 - MPMX19_03330 0.11 -0.5 680,883 - MPMX19_03330 0.11 -0.9
Or see this region's nucleotide sequence