Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03312

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03311 and MPMX19_03312 overlap by 4 nucleotidesMPMX19_03312 and MPMX19_03313 are separated by 115 nucleotides MPMX19_03311: MPMX19_03311 - Ribose import permease protein RbsC, at 658,188 to 659,279 _03311 MPMX19_03312: MPMX19_03312 - Galactose/methyl galactoside import ATP-binding protein MglA, at 659,276 to 660,850 _03312 MPMX19_03313: MPMX19_03313 - Ureidoglycolate lyase, at 660,966 to 661,811 _03313 Position (kb) 659 660 661Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 658.402 kb on + strand, within MPMX19_03311at 658.402 kb on + strand, within MPMX19_03311at 658.403 kb on - strand, within MPMX19_03311at 658.403 kb on - strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.489 kb on + strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.490 kb on - strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.561 kb on + strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.562 kb on - strand, within MPMX19_03311at 658.884 kb on - strand, within MPMX19_03311at 659.023 kb on + strand, within MPMX19_03311at 659.023 kb on + strand, within MPMX19_03311at 659.023 kb on + strand, within MPMX19_03311at 659.024 kb on - strand, within MPMX19_03311at 659.184 kb on + strandat 659.185 kb on - strandat 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.490 kb on + strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.491 kb on - strand, within MPMX19_03312at 659.661 kb on + strand, within MPMX19_03312at 659.661 kb on + strand, within MPMX19_03312at 659.662 kb on - strand, within MPMX19_03312at 659.662 kb on - strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.802 kb on + strand, within MPMX19_03312at 659.803 kb on - strand, within MPMX19_03312at 659.803 kb on - strand, within MPMX19_03312at 659.803 kb on - strand, within MPMX19_03312at 659.803 kb on - strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.213 kb on + strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.214 kb on - strand, within MPMX19_03312at 660.609 kb on + strand, within MPMX19_03312at 660.609 kb on + strand, within MPMX19_03312at 660.609 kb on + strand, within MPMX19_03312at 660.609 kb on + strand, within MPMX19_03312at 660.610 kb on - strand, within MPMX19_03312at 660.636 kb on + strand, within MPMX19_03312at 660.636 kb on + strand, within MPMX19_03312at 660.636 kb on + strand, within MPMX19_03312at 660.637 kb on - strand, within MPMX19_03312at 660.979 kb on + strandat 660.979 kb on + strandat 660.980 kb on - strandat 661.045 kb on + strandat 661.045 kb on + strandat 661.045 kb on + strandat 661.046 kb on - strandat 661.046 kb on - strandat 661.135 kb on + strand, within MPMX19_03313at 661.135 kb on + strand, within MPMX19_03313at 661.135 kb on + strand, within MPMX19_03313at 661.135 kb on + strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.136 kb on - strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.159 kb on + strand, within MPMX19_03313at 661.160 kb on - strand, within MPMX19_03313at 661.160 kb on - strand, within MPMX19_03313at 661.364 kb on - strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.402 kb on + strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.403 kb on - strand, within MPMX19_03313at 661.573 kb on + strand, within MPMX19_03313at 661.573 kb on + strand, within MPMX19_03313at 661.574 kb on - strand, within MPMX19_03313at 661.745 kb on + strandat 661.746 kb on - strandat 661.811 kb on + strandat 661.811 kb on + strandat 661.811 kb on + strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.812 kb on - strandat 661.812 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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658,402 + MPMX19_03311 0.20 -1.3
658,402 + MPMX19_03311 0.20 -1.1
658,403 - MPMX19_03311 0.20 -0.3
658,403 - MPMX19_03311 0.20 -2.0
658,489 + MPMX19_03311 0.28 +0.7
658,489 + MPMX19_03311 0.28 -0.6
658,489 + MPMX19_03311 0.28 +1.2
658,489 + MPMX19_03311 0.28 -0.4
658,489 + MPMX19_03311 0.28 -0.2
658,489 + MPMX19_03311 0.28 +0.7
658,489 + MPMX19_03311 0.28 -0.6
658,489 + MPMX19_03311 0.28 -2.2
658,489 + MPMX19_03311 0.28 -1.6
658,489 + MPMX19_03311 0.28 -0.8
658,489 + MPMX19_03311 0.28 +0.7
658,489 + MPMX19_03311 0.28 -0.6
658,489 + MPMX19_03311 0.28 -0.0
658,489 + MPMX19_03311 0.28 -0.6
658,489 + MPMX19_03311 0.28 +1.7
658,489 + MPMX19_03311 0.28 -2.5
658,489 + MPMX19_03311 0.28 +0.9
658,490 - MPMX19_03311 0.28 +1.2
658,490 - MPMX19_03311 0.28 -1.5
658,490 - MPMX19_03311 0.28 +0.4
658,490 - MPMX19_03311 0.28 +0.1
658,490 - MPMX19_03311 0.28 -0.5
658,490 - MPMX19_03311 0.28 +0.0
658,490 - MPMX19_03311 0.28 -0.4
658,490 - MPMX19_03311 0.28 -0.6
658,490 - MPMX19_03311 0.28 -0.3
658,490 - MPMX19_03311 0.28 -0.5
658,561 + MPMX19_03311 0.34 +0.0
658,561 + MPMX19_03311 0.34 -0.6
658,561 + MPMX19_03311 0.34 -0.5
658,561 + MPMX19_03311 0.34 -1.1
658,561 + MPMX19_03311 0.34 -0.3
658,561 + MPMX19_03311 0.34 -1.3
658,561 + MPMX19_03311 0.34 +0.7
658,561 + MPMX19_03311 0.34 -1.5
658,561 + MPMX19_03311 0.34 +0.6
658,561 + MPMX19_03311 0.34 +0.7
658,561 + MPMX19_03311 0.34 +0.1
658,561 + MPMX19_03311 0.34 +1.7
658,561 + MPMX19_03311 0.34 -0.3
658,562 - MPMX19_03311 0.34 -0.9
658,562 - MPMX19_03311 0.34 -0.8
658,562 - MPMX19_03311 0.34 -1.0
658,562 - MPMX19_03311 0.34 -0.9
658,562 - MPMX19_03311 0.34 +0.1
658,562 - MPMX19_03311 0.34 -1.0
658,562 - MPMX19_03311 0.34 +0.1
658,562 - MPMX19_03311 0.34 +0.1
658,562 - MPMX19_03311 0.34 -0.2
658,562 - MPMX19_03311 0.34 +0.1
658,562 - MPMX19_03311 0.34 +0.5
658,562 - MPMX19_03311 0.34 +0.4
658,562 - MPMX19_03311 0.34 +0.1
658,562 - MPMX19_03311 0.34 -0.2
658,562 - MPMX19_03311 0.34 -0.8
658,562 - MPMX19_03311 0.34 -1.0
658,562 - MPMX19_03311 0.34 -1.3
658,562 - MPMX19_03311 0.34 +0.2
658,562 - MPMX19_03311 0.34 -1.0
658,562 - MPMX19_03311 0.34 -0.0
658,884 - MPMX19_03311 0.64 -1.0
659,023 + MPMX19_03311 0.76 -1.1
659,023 + MPMX19_03311 0.76 -0.8
659,023 + MPMX19_03311 0.76 -0.4
659,024 - MPMX19_03311 0.77 +0.4
659,184 + -0.5
659,185 - -0.5
659,490 + MPMX19_03312 0.14 +0.4
659,490 + MPMX19_03312 0.14 +1.5
659,490 + MPMX19_03312 0.14 -0.9
659,490 + MPMX19_03312 0.14 -0.1
659,490 + MPMX19_03312 0.14 +0.4
659,490 + MPMX19_03312 0.14 -0.6
659,490 + MPMX19_03312 0.14 -0.6
659,491 - MPMX19_03312 0.14 -0.5
659,491 - MPMX19_03312 0.14 +0.2
659,491 - MPMX19_03312 0.14 +1.3
659,491 - MPMX19_03312 0.14 -1.1
659,491 - MPMX19_03312 0.14 +2.0
659,661 + MPMX19_03312 0.24 -0.5
659,661 + MPMX19_03312 0.24 -0.2
659,662 - MPMX19_03312 0.25 -0.4
659,662 - MPMX19_03312 0.25 -0.1
659,802 + MPMX19_03312 0.33 -1.3
659,802 + MPMX19_03312 0.33 -1.1
659,802 + MPMX19_03312 0.33 -0.1
659,802 + MPMX19_03312 0.33 -1.6
659,802 + MPMX19_03312 0.33 -1.6
659,803 - MPMX19_03312 0.33 -1.0
659,803 - MPMX19_03312 0.33 -0.3
659,803 - MPMX19_03312 0.33 +0.1
659,803 - MPMX19_03312 0.33 +0.1
660,213 + MPMX19_03312 0.59 -0.3
660,213 + MPMX19_03312 0.59 -0.2
660,213 + MPMX19_03312 0.59 -0.4
660,213 + MPMX19_03312 0.59 -0.3
660,213 + MPMX19_03312 0.59 +1.2
660,213 + MPMX19_03312 0.59 +0.4
660,213 + MPMX19_03312 0.59 -0.5
660,213 + MPMX19_03312 0.59 +0.7
660,214 - MPMX19_03312 0.60 -0.8
660,214 - MPMX19_03312 0.60 +0.1
660,214 - MPMX19_03312 0.60 -0.9
660,214 - MPMX19_03312 0.60 -0.3
660,214 - MPMX19_03312 0.60 -0.8
660,214 - MPMX19_03312 0.60 -1.1
660,214 - MPMX19_03312 0.60 -0.2
660,214 - MPMX19_03312 0.60 -0.4
660,214 - MPMX19_03312 0.60 -0.1
660,214 - MPMX19_03312 0.60 -2.3
660,214 - MPMX19_03312 0.60 -1.1
660,214 - MPMX19_03312 0.60 +0.8
660,214 - MPMX19_03312 0.60 +0.9
660,214 - MPMX19_03312 0.60 -0.5
660,214 - MPMX19_03312 0.60 +1.7
660,609 + MPMX19_03312 0.85 -0.8
660,609 + MPMX19_03312 0.85 -1.3
660,609 + MPMX19_03312 0.85 -0.3
660,609 + MPMX19_03312 0.85 -1.6
660,610 - MPMX19_03312 0.85 +0.7
660,636 + MPMX19_03312 0.86 -2.1
660,636 + MPMX19_03312 0.86 -0.9
660,636 + MPMX19_03312 0.86 -1.1
660,637 - MPMX19_03312 0.86 -0.1
660,979 + -0.7
660,979 + +0.4
660,980 - -0.4
661,045 + -0.3
661,045 + -1.2
661,045 + +0.5
661,046 - -0.6
661,046 - -1.4
661,135 + MPMX19_03313 0.20 -2.1
661,135 + MPMX19_03313 0.20 +0.1
661,135 + MPMX19_03313 0.20 -0.1
661,135 + MPMX19_03313 0.20 -0.5
661,136 - MPMX19_03313 0.20 -1.3
661,136 - MPMX19_03313 0.20 +0.4
661,136 - MPMX19_03313 0.20 +0.8
661,136 - MPMX19_03313 0.20 +0.6
661,159 + MPMX19_03313 0.23 -0.7
661,159 + MPMX19_03313 0.23 +1.4
661,159 + MPMX19_03313 0.23 +0.3
661,159 + MPMX19_03313 0.23 -0.2
661,159 + MPMX19_03313 0.23 +0.1
661,159 + MPMX19_03313 0.23 -0.1
661,160 - MPMX19_03313 0.23 -0.1
661,160 - MPMX19_03313 0.23 -0.0
661,364 - MPMX19_03313 0.47 +0.9
661,402 + MPMX19_03313 0.52 -0.5
661,402 + MPMX19_03313 0.52 +0.9
661,402 + MPMX19_03313 0.52 +0.1
661,402 + MPMX19_03313 0.52 +1.3
661,402 + MPMX19_03313 0.52 +0.0
661,403 - MPMX19_03313 0.52 -1.6
661,403 - MPMX19_03313 0.52 +0.5
661,403 - MPMX19_03313 0.52 -0.7
661,403 - MPMX19_03313 0.52 +0.4
661,403 - MPMX19_03313 0.52 -0.6
661,403 - MPMX19_03313 0.52 +0.2
661,403 - MPMX19_03313 0.52 -0.3
661,403 - MPMX19_03313 0.52 +0.4
661,403 - MPMX19_03313 0.52 -0.4
661,403 - MPMX19_03313 0.52 -1.1
661,403 - MPMX19_03313 0.52 -2.8
661,403 - MPMX19_03313 0.52 -0.3
661,403 - MPMX19_03313 0.52 -3.4
661,403 - MPMX19_03313 0.52 -1.2
661,403 - MPMX19_03313 0.52 -0.6
661,403 - MPMX19_03313 0.52 -0.8
661,573 + MPMX19_03313 0.72 +0.4
661,573 + MPMX19_03313 0.72 -0.2
661,574 - MPMX19_03313 0.72 -0.5
661,745 + -2.8
661,746 - +1.5
661,811 + -2.1
661,811 + -0.3
661,811 + -0.0
661,812 - -0.4
661,812 - +0.0
661,812 - +0.4
661,812 - -0.1

Or see this region's nucleotide sequence