Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03283

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03281 and MPMX19_03282 are separated by 39 nucleotidesMPMX19_03282 and MPMX19_03283 are separated by 101 nucleotidesMPMX19_03283 and MPMX19_03284 are separated by 59 nucleotides MPMX19_03281: MPMX19_03281 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 627,072 to 627,818 _03281 MPMX19_03282: MPMX19_03282 - HTH-type transcriptional regulator McbR, at 627,858 to 628,541 _03282 MPMX19_03283: MPMX19_03283 - Glutamate-1-semialdehyde 2,1-aminomutase, at 628,643 to 629,956 _03283 MPMX19_03284: MPMX19_03284 - Apulose-4-phosphate transketolase subunit B, at 630,016 to 631,047 _03284 Position (kb) 628 629 630Strain fitness (log2 ratio) -3 -2 -1 0 1at 627.738 kb on + strand, within MPMX19_03281at 627.738 kb on + strand, within MPMX19_03281at 627.739 kb on - strand, within MPMX19_03281at 627.739 kb on - strand, within MPMX19_03281at 627.739 kb on - strand, within MPMX19_03281at 627.791 kb on + strandat 627.792 kb on - strandat 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.012 kb on + strand, within MPMX19_03282at 628.013 kb on - strand, within MPMX19_03282at 628.036 kb on + strand, within MPMX19_03282at 628.036 kb on + strand, within MPMX19_03282at 628.036 kb on + strand, within MPMX19_03282at 628.037 kb on - strand, within MPMX19_03282at 628.037 kb on - strand, within MPMX19_03282at 628.037 kb on - strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.149 kb on + strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.150 kb on - strand, within MPMX19_03282at 628.300 kb on + strand, within MPMX19_03282at 628.300 kb on + strand, within MPMX19_03282at 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.495 kb on + strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.496 kb on - strandat 628.622 kb on + strandat 628.622 kb on + strandat 628.622 kb on + strandat 628.623 kb on - strandat 628.623 kb on - strandat 628.624 kb on + strandat 628.624 kb on + strandat 628.624 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.629 kb on + strandat 628.630 kb on - strandat 628.630 kb on - strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.743 kb on + strandat 628.744 kb on - strandat 628.744 kb on - strandat 628.846 kb on - strand, within MPMX19_03283at 628.846 kb on - strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.872 kb on + strand, within MPMX19_03283at 628.873 kb on - strand, within MPMX19_03283at 628.873 kb on - strand, within MPMX19_03283at 628.873 kb on - strand, within MPMX19_03283at 628.893 kb on + strand, within MPMX19_03283at 628.894 kb on - strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.983 kb on + strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 628.984 kb on - strand, within MPMX19_03283at 629.202 kb on + strand, within MPMX19_03283at 629.382 kb on + strand, within MPMX19_03283at 629.382 kb on + strand, within MPMX19_03283at 629.383 kb on - strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.409 kb on + strand, within MPMX19_03283at 629.410 kb on - strand, within MPMX19_03283at 629.410 kb on - strand, within MPMX19_03283at 629.410 kb on - strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.425 kb on + strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.426 kb on - strand, within MPMX19_03283at 629.514 kb on + strand, within MPMX19_03283at 629.514 kb on + strand, within MPMX19_03283at 629.514 kb on + strand, within MPMX19_03283at 629.515 kb on - strand, within MPMX19_03283at 629.515 kb on - strand, within MPMX19_03283at 629.533 kb on - strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.598 kb on + strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.599 kb on - strand, within MPMX19_03283at 629.796 kb on + strand, within MPMX19_03283at 629.796 kb on + strand, within MPMX19_03283at 629.796 kb on + strand, within MPMX19_03283at 629.797 kb on - strand, within MPMX19_03283at 629.803 kb on + strand, within MPMX19_03283at 629.803 kb on + strand, within MPMX19_03283at 629.803 kb on + strand, within MPMX19_03283at 629.803 kb on + strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.804 kb on - strand, within MPMX19_03283at 629.827 kb on - strandat 629.827 kb on - strandat 629.827 kb on - strandat 629.832 kb on + strandat 629.833 kb on - strandat 629.833 kb on - strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.859 kb on + strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 629.860 kb on - strandat 630.068 kb on + strandat 630.078 kb on - strandat 630.107 kb on + strandat 630.107 kb on + strandat 630.107 kb on + strandat 630.438 kb on - strand, within MPMX19_03284at 630.473 kb on + strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.474 kb on - strand, within MPMX19_03284at 630.608 kb on + strand, within MPMX19_03284at 630.608 kb on + strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.609 kb on - strand, within MPMX19_03284at 630.665 kb on + strand, within MPMX19_03284at 630.666 kb on - strand, within MPMX19_03284at 630.851 kb on + strand, within MPMX19_03284at 630.852 kb on - strand, within MPMX19_03284at 630.852 kb on - strand, within MPMX19_03284at 630.852 kb on - strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.923 kb on + strand, within MPMX19_03284at 630.924 kb on - strand, within MPMX19_03284at 630.924 kb on - strand, within MPMX19_03284at 630.924 kb on - strand, within MPMX19_03284at 630.924 kb on - strand, within MPMX19_03284

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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627,738 + MPMX19_03281 0.89 +0.3
627,738 + MPMX19_03281 0.89 -0.3
627,739 - MPMX19_03281 0.89 +1.0
627,739 - MPMX19_03281 0.89 +0.1
627,739 - MPMX19_03281 0.89 +0.7
627,791 + -0.8
627,792 - -0.8
628,012 + MPMX19_03282 0.23 +1.7
628,012 + MPMX19_03282 0.23 -1.1
628,012 + MPMX19_03282 0.23 -0.9
628,012 + MPMX19_03282 0.23 +0.0
628,012 + MPMX19_03282 0.23 -0.5
628,013 - MPMX19_03282 0.23 +0.5
628,036 + MPMX19_03282 0.26 +0.8
628,036 + MPMX19_03282 0.26 +0.4
628,036 + MPMX19_03282 0.26 -0.1
628,037 - MPMX19_03282 0.26 +0.7
628,037 - MPMX19_03282 0.26 -0.2
628,037 - MPMX19_03282 0.26 -2.5
628,149 + MPMX19_03282 0.43 -0.6
628,149 + MPMX19_03282 0.43 -1.0
628,149 + MPMX19_03282 0.43 +1.1
628,149 + MPMX19_03282 0.43 -0.9
628,150 - MPMX19_03282 0.43 +1.7
628,150 - MPMX19_03282 0.43 +0.1
628,150 - MPMX19_03282 0.43 +0.1
628,150 - MPMX19_03282 0.43 -0.9
628,150 - MPMX19_03282 0.43 +0.3
628,300 + MPMX19_03282 0.65 -0.0
628,300 + MPMX19_03282 0.65 -1.1
628,495 + -1.1
628,495 + -0.8
628,495 + +0.4
628,495 + -2.1
628,495 + -0.3
628,495 + +0.4
628,495 + -0.1
628,495 + -0.7
628,495 + -1.6
628,496 - -1.1
628,496 - -1.3
628,496 - -0.8
628,496 - -0.3
628,496 - -1.2
628,496 - +0.1
628,496 - -1.3
628,496 - -1.1
628,496 - -1.0
628,496 - -0.3
628,622 + +1.3
628,622 + +0.3
628,622 + -0.5
628,623 - -0.3
628,623 - -0.4
628,624 + -1.6
628,624 + -1.8
628,624 + +0.9
628,629 + -0.2
628,629 + -1.0
628,629 + +1.4
628,629 + -1.3
628,629 + -0.6
628,630 - -0.7
628,630 - -1.1
628,743 + -0.0
628,743 + -0.5
628,743 + -0.4
628,743 + +0.0
628,743 + -0.6
628,744 - +0.2
628,744 - +0.8
628,846 - MPMX19_03283 0.15 -3.0
628,846 - MPMX19_03283 0.15 +0.3
628,872 + MPMX19_03283 0.17 -0.1
628,872 + MPMX19_03283 0.17 -2.4
628,872 + MPMX19_03283 0.17 +0.2
628,872 + MPMX19_03283 0.17 +1.1
628,872 + MPMX19_03283 0.17 +0.8
628,872 + MPMX19_03283 0.17 -0.9
628,873 - MPMX19_03283 0.18 -0.3
628,873 - MPMX19_03283 0.18 -0.1
628,873 - MPMX19_03283 0.18 +1.7
628,893 + MPMX19_03283 0.19 +0.1
628,894 - MPMX19_03283 0.19 +1.0
628,983 + MPMX19_03283 0.26 -3.5
628,983 + MPMX19_03283 0.26 -1.3
628,983 + MPMX19_03283 0.26 -0.5
628,983 + MPMX19_03283 0.26 -0.7
628,983 + MPMX19_03283 0.26 +0.5
628,984 - MPMX19_03283 0.26 -2.0
628,984 - MPMX19_03283 0.26 -0.1
628,984 - MPMX19_03283 0.26 -0.3
628,984 - MPMX19_03283 0.26 -1.5
628,984 - MPMX19_03283 0.26 +0.0
629,202 + MPMX19_03283 0.43 -1.4
629,382 + MPMX19_03283 0.56 -0.4
629,382 + MPMX19_03283 0.56 +1.0
629,383 - MPMX19_03283 0.56 +0.5
629,409 + MPMX19_03283 0.58 -0.1
629,409 + MPMX19_03283 0.58 +0.4
629,409 + MPMX19_03283 0.58 -0.1
629,409 + MPMX19_03283 0.58 -0.5
629,409 + MPMX19_03283 0.58 -0.7
629,409 + MPMX19_03283 0.58 +0.0
629,410 - MPMX19_03283 0.58 +1.0
629,410 - MPMX19_03283 0.58 -0.4
629,410 - MPMX19_03283 0.58 +0.2
629,425 + MPMX19_03283 0.60 +1.2
629,425 + MPMX19_03283 0.60 -0.2
629,425 + MPMX19_03283 0.60 -1.3
629,425 + MPMX19_03283 0.60 -1.5
629,425 + MPMX19_03283 0.60 +0.2
629,425 + MPMX19_03283 0.60 +0.3
629,426 - MPMX19_03283 0.60 -0.6
629,426 - MPMX19_03283 0.60 -0.3
629,426 - MPMX19_03283 0.60 -0.3
629,426 - MPMX19_03283 0.60 -0.1
629,426 - MPMX19_03283 0.60 -0.6
629,426 - MPMX19_03283 0.60 +0.6
629,514 + MPMX19_03283 0.66 -0.5
629,514 + MPMX19_03283 0.66 -1.0
629,514 + MPMX19_03283 0.66 +0.1
629,515 - MPMX19_03283 0.66 +0.8
629,515 - MPMX19_03283 0.66 +0.0
629,533 - MPMX19_03283 0.68 +0.5
629,598 + MPMX19_03283 0.73 +1.0
629,598 + MPMX19_03283 0.73 -0.7
629,598 + MPMX19_03283 0.73 -2.2
629,598 + MPMX19_03283 0.73 +0.4
629,598 + MPMX19_03283 0.73 +1.1
629,598 + MPMX19_03283 0.73 -0.0
629,598 + MPMX19_03283 0.73 -0.7
629,598 + MPMX19_03283 0.73 -0.9
629,599 - MPMX19_03283 0.73 -0.5
629,599 - MPMX19_03283 0.73 -0.0
629,599 - MPMX19_03283 0.73 -0.1
629,599 - MPMX19_03283 0.73 -0.7
629,599 - MPMX19_03283 0.73 -0.6
629,599 - MPMX19_03283 0.73 -0.9
629,599 - MPMX19_03283 0.73 +0.3
629,599 - MPMX19_03283 0.73 -0.2
629,599 - MPMX19_03283 0.73 +1.7
629,599 - MPMX19_03283 0.73 -0.2
629,599 - MPMX19_03283 0.73 +0.0
629,599 - MPMX19_03283 0.73 +0.3
629,599 - MPMX19_03283 0.73 +0.1
629,599 - MPMX19_03283 0.73 +0.5
629,599 - MPMX19_03283 0.73 -0.6
629,599 - MPMX19_03283 0.73 +0.7
629,599 - MPMX19_03283 0.73 +0.2
629,599 - MPMX19_03283 0.73 +0.7
629,599 - MPMX19_03283 0.73 -2.1
629,599 - MPMX19_03283 0.73 +0.7
629,599 - MPMX19_03283 0.73 -0.0
629,599 - MPMX19_03283 0.73 -0.9
629,599 - MPMX19_03283 0.73 -1.0
629,796 + MPMX19_03283 0.88 -0.6
629,796 + MPMX19_03283 0.88 +0.6
629,796 + MPMX19_03283 0.88 -0.4
629,797 - MPMX19_03283 0.88 -0.6
629,803 + MPMX19_03283 0.88 +1.3
629,803 + MPMX19_03283 0.88 +0.1
629,803 + MPMX19_03283 0.88 +0.9
629,803 + MPMX19_03283 0.88 -0.2
629,804 - MPMX19_03283 0.88 -1.4
629,804 - MPMX19_03283 0.88 +0.5
629,804 - MPMX19_03283 0.88 -0.9
629,804 - MPMX19_03283 0.88 -0.3
629,804 - MPMX19_03283 0.88 +0.3
629,804 - MPMX19_03283 0.88 +0.1
629,804 - MPMX19_03283 0.88 -0.8
629,804 - MPMX19_03283 0.88 -2.2
629,827 - -0.8
629,827 - +0.1
629,827 - -0.8
629,832 + +0.9
629,833 - -0.3
629,833 - +0.1
629,859 + -0.6
629,859 + -1.1
629,859 + -1.6
629,859 + -0.2
629,859 + -1.4
629,859 + -0.6
629,859 + +0.1
629,859 + -0.4
629,860 - -1.6
629,860 - -1.5
629,860 - -0.7
629,860 - -0.2
629,860 - -0.5
629,860 - -0.7
629,860 - -0.8
629,860 - +0.5
629,860 - -0.7
630,068 + -0.5
630,078 - -1.3
630,107 + +0.5
630,107 + +0.9
630,107 + -1.1
630,438 - MPMX19_03284 0.41 -0.5
630,473 + MPMX19_03284 0.44 -0.9
630,474 - MPMX19_03284 0.44 +0.7
630,474 - MPMX19_03284 0.44 -1.0
630,474 - MPMX19_03284 0.44 -0.2
630,474 - MPMX19_03284 0.44 -0.4
630,474 - MPMX19_03284 0.44 -0.0
630,474 - MPMX19_03284 0.44 +0.2
630,474 - MPMX19_03284 0.44 -1.6
630,608 + MPMX19_03284 0.57 -2.6
630,608 + MPMX19_03284 0.57 -2.1
630,609 - MPMX19_03284 0.57 +1.4
630,609 - MPMX19_03284 0.57 -1.0
630,609 - MPMX19_03284 0.57 -1.3
630,609 - MPMX19_03284 0.57 -0.6
630,609 - MPMX19_03284 0.57 -0.0
630,609 - MPMX19_03284 0.57 -0.6
630,665 + MPMX19_03284 0.63 +0.1
630,666 - MPMX19_03284 0.63 -0.8
630,851 + MPMX19_03284 0.81 -1.6
630,852 - MPMX19_03284 0.81 +0.2
630,852 - MPMX19_03284 0.81 -1.8
630,852 - MPMX19_03284 0.81 +1.7
630,923 + MPMX19_03284 0.88 +1.1
630,923 + MPMX19_03284 0.88 +0.0
630,923 + MPMX19_03284 0.88 +1.0
630,923 + MPMX19_03284 0.88 -0.4
630,923 + MPMX19_03284 0.88 -0.8
630,923 + MPMX19_03284 0.88 -1.1
630,924 - MPMX19_03284 0.88 -0.2
630,924 - MPMX19_03284 0.88 -0.2
630,924 - MPMX19_03284 0.88 -0.3
630,924 - MPMX19_03284 0.88 +1.1

Or see this region's nucleotide sequence