Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03266

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03265 and MPMX19_03266 are separated by 75 nucleotidesMPMX19_03266 and MPMX19_03267 are separated by 47 nucleotides MPMX19_03265: MPMX19_03265 - Spermidine/putrescine import ATP-binding protein PotA, at 608,227 to 609,399 _03265 MPMX19_03266: MPMX19_03266 - Inositol-1-monophosphatase, at 609,475 to 610,251 _03266 MPMX19_03267: MPMX19_03267 - Periplasmic AppA protein, at 610,299 to 611,651 _03267 Position (kb) 609 610 611Strain fitness (log2 ratio) -3 -2 -1 0 1at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.557 kb on + strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.558 kb on - strand, within MPMX19_03265at 608.600 kb on - strand, within MPMX19_03265at 608.600 kb on - strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.660 kb on + strand, within MPMX19_03265at 608.661 kb on - strand, within MPMX19_03265at 608.661 kb on - strand, within MPMX19_03265at 608.661 kb on - strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.872 kb on + strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.873 kb on - strand, within MPMX19_03265at 608.971 kb on + strand, within MPMX19_03265at 608.972 kb on - strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.241 kb on + strand, within MPMX19_03265at 609.242 kb on - strand, within MPMX19_03265at 609.242 kb on - strand, within MPMX19_03265at 609.242 kb on - strand, within MPMX19_03265at 609.242 kb on - strand, within MPMX19_03265at 609.262 kb on + strand, within MPMX19_03265at 609.262 kb on + strand, within MPMX19_03265at 609.262 kb on + strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.263 kb on - strand, within MPMX19_03265at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.739 kb on + strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.740 kb on - strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.814 kb on + strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 609.815 kb on - strand, within MPMX19_03266at 610.066 kb on + strand, within MPMX19_03266at 610.066 kb on + strand, within MPMX19_03266at 610.066 kb on + strand, within MPMX19_03266at 610.067 kb on - strand, within MPMX19_03266at 610.067 kb on - strand, within MPMX19_03266at 610.566 kb on + strand, within MPMX19_03267at 610.567 kb on - strand, within MPMX19_03267at 610.567 kb on - strand, within MPMX19_03267at 610.594 kb on + strand, within MPMX19_03267at 610.845 kb on + strand, within MPMX19_03267at 610.845 kb on + strand, within MPMX19_03267at 610.846 kb on - strand, within MPMX19_03267at 610.846 kb on - strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.148 kb on + strand, within MPMX19_03267at 611.149 kb on - strand, within MPMX19_03267at 611.149 kb on - strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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608,557 + MPMX19_03265 0.28 +0.1
608,557 + MPMX19_03265 0.28 -0.2
608,557 + MPMX19_03265 0.28 -0.7
608,557 + MPMX19_03265 0.28 +0.1
608,557 + MPMX19_03265 0.28 -0.7
608,558 - MPMX19_03265 0.28 +0.2
608,558 - MPMX19_03265 0.28 -0.2
608,558 - MPMX19_03265 0.28 -0.2
608,558 - MPMX19_03265 0.28 +0.8
608,558 - MPMX19_03265 0.28 -1.1
608,600 - MPMX19_03265 0.32 -1.1
608,600 - MPMX19_03265 0.32 -0.4
608,660 + MPMX19_03265 0.37 -1.3
608,660 + MPMX19_03265 0.37 +0.6
608,660 + MPMX19_03265 0.37 -0.6
608,660 + MPMX19_03265 0.37 +1.0
608,660 + MPMX19_03265 0.37 -0.1
608,661 - MPMX19_03265 0.37 -0.6
608,661 - MPMX19_03265 0.37 -0.3
608,661 - MPMX19_03265 0.37 -0.9
608,872 + MPMX19_03265 0.55 +0.2
608,872 + MPMX19_03265 0.55 -0.1
608,872 + MPMX19_03265 0.55 -0.6
608,872 + MPMX19_03265 0.55 -0.6
608,872 + MPMX19_03265 0.55 +1.7
608,872 + MPMX19_03265 0.55 -0.1
608,872 + MPMX19_03265 0.55 -1.8
608,873 - MPMX19_03265 0.55 -0.6
608,873 - MPMX19_03265 0.55 -0.0
608,873 - MPMX19_03265 0.55 +1.0
608,873 - MPMX19_03265 0.55 +0.4
608,971 + MPMX19_03265 0.63 +0.0
608,972 - MPMX19_03265 0.64 +0.5
609,241 + MPMX19_03265 0.86 -0.1
609,241 + MPMX19_03265 0.86 +0.4
609,241 + MPMX19_03265 0.86 +0.2
609,241 + MPMX19_03265 0.86 -1.5
609,241 + MPMX19_03265 0.86 -1.2
609,241 + MPMX19_03265 0.86 -0.7
609,242 - MPMX19_03265 0.87 -0.6
609,242 - MPMX19_03265 0.87 -2.3
609,242 - MPMX19_03265 0.87 -1.1
609,242 - MPMX19_03265 0.87 -0.1
609,262 + MPMX19_03265 0.88 -0.4
609,262 + MPMX19_03265 0.88 +0.1
609,262 + MPMX19_03265 0.88 -0.8
609,263 - MPMX19_03265 0.88 +0.1
609,263 - MPMX19_03265 0.88 -0.2
609,263 - MPMX19_03265 0.88 -1.1
609,263 - MPMX19_03265 0.88 -1.1
609,263 - MPMX19_03265 0.88 -1.0
609,263 - MPMX19_03265 0.88 -1.0
609,263 - MPMX19_03265 0.88 -1.1
609,263 - MPMX19_03265 0.88 -1.5
609,263 - MPMX19_03265 0.88 +1.0
609,263 - MPMX19_03265 0.88 +0.1
609,263 - MPMX19_03265 0.88 -0.1
609,739 + MPMX19_03266 0.34 -0.1
609,739 + MPMX19_03266 0.34 +0.5
609,739 + MPMX19_03266 0.34 -0.1
609,739 + MPMX19_03266 0.34 -0.1
609,739 + MPMX19_03266 0.34 -1.8
609,739 + MPMX19_03266 0.34 +0.7
609,740 - MPMX19_03266 0.34 -2.6
609,740 - MPMX19_03266 0.34 -0.9
609,740 - MPMX19_03266 0.34 -0.6
609,740 - MPMX19_03266 0.34 -1.4
609,740 - MPMX19_03266 0.34 -0.5
609,740 - MPMX19_03266 0.34 -1.3
609,740 - MPMX19_03266 0.34 -1.6
609,740 - MPMX19_03266 0.34 -1.2
609,740 - MPMX19_03266 0.34 +0.4
609,740 - MPMX19_03266 0.34 -1.9
609,740 - MPMX19_03266 0.34 +1.1
609,740 - MPMX19_03266 0.34 +0.3
609,740 - MPMX19_03266 0.34 +0.1
609,814 + MPMX19_03266 0.44 -1.2
609,814 + MPMX19_03266 0.44 -0.0
609,814 + MPMX19_03266 0.44 -1.1
609,814 + MPMX19_03266 0.44 -1.7
609,814 + MPMX19_03266 0.44 -0.3
609,814 + MPMX19_03266 0.44 -1.9
609,814 + MPMX19_03266 0.44 -0.5
609,814 + MPMX19_03266 0.44 -0.1
609,814 + MPMX19_03266 0.44 -0.8
609,814 + MPMX19_03266 0.44 -0.5
609,814 + MPMX19_03266 0.44 -1.5
609,815 - MPMX19_03266 0.44 -0.3
609,815 - MPMX19_03266 0.44 +0.4
609,815 - MPMX19_03266 0.44 -0.9
609,815 - MPMX19_03266 0.44 -3.0
609,815 - MPMX19_03266 0.44 +0.6
609,815 - MPMX19_03266 0.44 -2.8
609,815 - MPMX19_03266 0.44 -0.3
609,815 - MPMX19_03266 0.44 +0.3
610,066 + MPMX19_03266 0.76 -0.1
610,066 + MPMX19_03266 0.76 -1.2
610,066 + MPMX19_03266 0.76 +1.7
610,067 - MPMX19_03266 0.76 +1.7
610,067 - MPMX19_03266 0.76 +0.1
610,566 + MPMX19_03267 0.20 -1.8
610,567 - MPMX19_03267 0.20 +0.1
610,567 - MPMX19_03267 0.20 +0.2
610,594 + MPMX19_03267 0.22 -2.5
610,845 + MPMX19_03267 0.40 -2.7
610,845 + MPMX19_03267 0.40 -2.0
610,846 - MPMX19_03267 0.40 +0.4
610,846 - MPMX19_03267 0.40 +0.3
611,058 + MPMX19_03267 0.56 -0.2
611,058 + MPMX19_03267 0.56 -1.3
611,058 + MPMX19_03267 0.56 -1.7
611,058 + MPMX19_03267 0.56 -1.6
611,058 + MPMX19_03267 0.56 -0.5
611,058 + MPMX19_03267 0.56 +0.1
611,058 + MPMX19_03267 0.56 +0.9
611,058 + MPMX19_03267 0.56 -0.6
611,058 + MPMX19_03267 0.56 -1.3
611,058 + MPMX19_03267 0.56 +0.7
611,058 + MPMX19_03267 0.56 -0.9
611,059 - MPMX19_03267 0.56 +0.2
611,059 - MPMX19_03267 0.56 -0.8
611,059 - MPMX19_03267 0.56 -0.4
611,059 - MPMX19_03267 0.56 +0.8
611,060 + MPMX19_03267 0.56 -1.4
611,060 + MPMX19_03267 0.56 -1.3
611,060 + MPMX19_03267 0.56 +0.5
611,060 + MPMX19_03267 0.56 -1.5
611,060 + MPMX19_03267 0.56 +0.2
611,060 + MPMX19_03267 0.56 +0.2
611,060 + MPMX19_03267 0.56 +1.1
611,060 + MPMX19_03267 0.56 +1.2
611,060 + MPMX19_03267 0.56 -0.3
611,060 + MPMX19_03267 0.56 -0.2
611,060 + MPMX19_03267 0.56 -0.3
611,060 + MPMX19_03267 0.56 +0.9
611,060 + MPMX19_03267 0.56 +0.9
611,061 - MPMX19_03267 0.56 -0.9
611,061 - MPMX19_03267 0.56 +0.6
611,061 - MPMX19_03267 0.56 -0.4
611,061 - MPMX19_03267 0.56 -0.9
611,061 - MPMX19_03267 0.56 -1.4
611,061 - MPMX19_03267 0.56 +0.4
611,061 - MPMX19_03267 0.56 +0.4
611,061 - MPMX19_03267 0.56 +0.2
611,061 - MPMX19_03267 0.56 +0.3
611,061 - MPMX19_03267 0.56 +1.0
611,061 - MPMX19_03267 0.56 +1.0
611,061 - MPMX19_03267 0.56 -1.6
611,148 + MPMX19_03267 0.63 +0.1
611,149 - MPMX19_03267 0.63 -0.3
611,149 - MPMX19_03267 0.63 +0.4
611,172 + MPMX19_03267 0.65 -1.4
611,172 + MPMX19_03267 0.65 +0.0
611,172 + MPMX19_03267 0.65 -0.2
611,172 + MPMX19_03267 0.65 -0.0
611,172 + MPMX19_03267 0.65 +0.6
611,172 + MPMX19_03267 0.65 +0.6
611,172 + MPMX19_03267 0.65 -0.6
611,173 - MPMX19_03267 0.65 -1.6
611,173 - MPMX19_03267 0.65 -1.5
611,173 - MPMX19_03267 0.65 +0.4
611,173 - MPMX19_03267 0.65 +0.3

Or see this region's nucleotide sequence