Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03257

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03256 and MPMX19_03257 are separated by 108 nucleotidesMPMX19_03257 and MPMX19_03258 are separated by 40 nucleotidesMPMX19_03258 and MPMX19_03259 overlap by 4 nucleotides MPMX19_03256: MPMX19_03256 - hypothetical protein, at 597,393 to 598,244 _03256 MPMX19_03257: MPMX19_03257 - Glycine betaine/proline betaine transport system ATP-binding protein ProV, at 598,353 to 599,438 _03257 MPMX19_03258: MPMX19_03258 - Glycine betaine/choline transport system permease protein OusW, at 599,479 to 600,351 _03258 MPMX19_03259: MPMX19_03259 - Glycine betaine transport system permease protein OpuAB, at 600,348 to 601,196 _03259 Position (kb) 598 599 600Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 597.595 kb on - strand, within MPMX19_03256at 597.595 kb on - strand, within MPMX19_03256at 597.595 kb on - strand, within MPMX19_03256at 597.645 kb on + strand, within MPMX19_03256at 597.645 kb on + strand, within MPMX19_03256at 597.645 kb on + strand, within MPMX19_03256at 597.645 kb on + strand, within MPMX19_03256at 597.646 kb on - strand, within MPMX19_03256at 597.717 kb on + strand, within MPMX19_03256at 597.717 kb on + strand, within MPMX19_03256at 597.718 kb on - strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.741 kb on + strand, within MPMX19_03256at 597.742 kb on - strand, within MPMX19_03256at 597.742 kb on - strand, within MPMX19_03256at 597.742 kb on - strand, within MPMX19_03256at 597.861 kb on + strand, within MPMX19_03256at 597.861 kb on + strand, within MPMX19_03256at 597.862 kb on - strand, within MPMX19_03256at 597.862 kb on - strand, within MPMX19_03256at 597.999 kb on + strand, within MPMX19_03256at 597.999 kb on + strand, within MPMX19_03256at 597.999 kb on + strand, within MPMX19_03256at 597.999 kb on + strand, within MPMX19_03256at 598.000 kb on - strand, within MPMX19_03256at 598.000 kb on - strand, within MPMX19_03256at 598.000 kb on - strand, within MPMX19_03256at 598.041 kb on + strand, within MPMX19_03256at 598.041 kb on + strand, within MPMX19_03256at 598.041 kb on + strand, within MPMX19_03256at 598.041 kb on + strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.042 kb on - strand, within MPMX19_03256at 598.044 kb on + strand, within MPMX19_03256at 598.044 kb on + strand, within MPMX19_03256at 598.044 kb on + strand, within MPMX19_03256at 598.045 kb on - strand, within MPMX19_03256at 598.045 kb on - strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.110 kb on + strand, within MPMX19_03256at 598.111 kb on - strand, within MPMX19_03256at 598.111 kb on - strand, within MPMX19_03256at 598.239 kb on + strandat 598.239 kb on + strandat 598.239 kb on + strandat 598.240 kb on - strandat 598.302 kb on + strandat 598.302 kb on + strandat 598.302 kb on + strandat 598.302 kb on + strandat 598.303 kb on - strandat 598.303 kb on - strandat 598.344 kb on + strandat 599.151 kb on + strand, within MPMX19_03257at 599.151 kb on + strand, within MPMX19_03257at 599.151 kb on + strand, within MPMX19_03257at 599.151 kb on + strand, within MPMX19_03257at 599.152 kb on - strand, within MPMX19_03257at 599.152 kb on - strand, within MPMX19_03257at 599.463 kb on + strandat 599.464 kb on - strandat 599.608 kb on + strand, within MPMX19_03258at 599.608 kb on + strand, within MPMX19_03258at 599.608 kb on + strand, within MPMX19_03258at 599.608 kb on + strand, within MPMX19_03258at 599.609 kb on - strand, within MPMX19_03258at 599.609 kb on - strand, within MPMX19_03258at 599.609 kb on - strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.647 kb on + strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.648 kb on - strand, within MPMX19_03258at 599.905 kb on + strand, within MPMX19_03258at 599.905 kb on + strand, within MPMX19_03258at 599.905 kb on + strand, within MPMX19_03258at 599.905 kb on + strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.906 kb on - strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.911 kb on + strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 599.912 kb on - strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.211 kb on + strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.212 kb on - strand, within MPMX19_03258at 600.334 kb on + strandat 600.334 kb on + strandat 600.335 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
597,595 - MPMX19_03256 0.24 +0.7
597,595 - MPMX19_03256 0.24 -0.4
597,595 - MPMX19_03256 0.24 +1.3
597,645 + MPMX19_03256 0.30 -0.9
597,645 + MPMX19_03256 0.30 -1.3
597,645 + MPMX19_03256 0.30 -2.0
597,645 + MPMX19_03256 0.30 +0.4
597,646 - MPMX19_03256 0.30 -0.1
597,717 + MPMX19_03256 0.38 -0.6
597,717 + MPMX19_03256 0.38 -0.8
597,718 - MPMX19_03256 0.38 +1.3
597,741 + MPMX19_03256 0.41 -0.2
597,741 + MPMX19_03256 0.41 +0.1
597,741 + MPMX19_03256 0.41 -0.8
597,741 + MPMX19_03256 0.41 -0.6
597,741 + MPMX19_03256 0.41 -0.6
597,741 + MPMX19_03256 0.41 +0.0
597,741 + MPMX19_03256 0.41 -0.2
597,741 + MPMX19_03256 0.41 +2.7
597,741 + MPMX19_03256 0.41 -0.1
597,741 + MPMX19_03256 0.41 -1.4
597,742 - MPMX19_03256 0.41 +1.1
597,742 - MPMX19_03256 0.41 -1.5
597,742 - MPMX19_03256 0.41 +0.1
597,861 + MPMX19_03256 0.55 -0.2
597,861 + MPMX19_03256 0.55 -0.9
597,862 - MPMX19_03256 0.55 +1.3
597,862 - MPMX19_03256 0.55 -0.5
597,999 + MPMX19_03256 0.71 -0.8
597,999 + MPMX19_03256 0.71 -1.2
597,999 + MPMX19_03256 0.71 -1.1
597,999 + MPMX19_03256 0.71 -1.2
598,000 - MPMX19_03256 0.71 -0.3
598,000 - MPMX19_03256 0.71 -0.7
598,000 - MPMX19_03256 0.71 -0.6
598,041 + MPMX19_03256 0.76 -1.2
598,041 + MPMX19_03256 0.76 +1.0
598,041 + MPMX19_03256 0.76 +0.2
598,041 + MPMX19_03256 0.76 -1.3
598,042 - MPMX19_03256 0.76 +0.7
598,042 - MPMX19_03256 0.76 +0.9
598,042 - MPMX19_03256 0.76 -0.6
598,042 - MPMX19_03256 0.76 -1.2
598,042 - MPMX19_03256 0.76 -0.2
598,042 - MPMX19_03256 0.76 -0.9
598,044 + MPMX19_03256 0.76 +0.7
598,044 + MPMX19_03256 0.76 +1.2
598,044 + MPMX19_03256 0.76 +0.0
598,045 - MPMX19_03256 0.77 -2.9
598,045 - MPMX19_03256 0.77 +1.0
598,110 + MPMX19_03256 0.84 -0.3
598,110 + MPMX19_03256 0.84 +0.3
598,110 + MPMX19_03256 0.84 -0.4
598,110 + MPMX19_03256 0.84 +0.4
598,110 + MPMX19_03256 0.84 -1.3
598,110 + MPMX19_03256 0.84 +0.1
598,110 + MPMX19_03256 0.84 -1.2
598,111 - MPMX19_03256 0.84 +0.1
598,111 - MPMX19_03256 0.84 +0.1
598,239 + -2.8
598,239 + +0.2
598,239 + -1.5
598,240 - -0.6
598,302 + +0.0
598,302 + +0.1
598,302 + +0.5
598,302 + -1.8
598,303 - -1.2
598,303 - -2.3
598,344 + -0.6
599,151 + MPMX19_03257 0.73 -1.1
599,151 + MPMX19_03257 0.73 -1.0
599,151 + MPMX19_03257 0.73 -1.4
599,151 + MPMX19_03257 0.73 -0.2
599,152 - MPMX19_03257 0.74 -0.4
599,152 - MPMX19_03257 0.74 +0.1
599,463 + -0.5
599,464 - -0.5
599,608 + MPMX19_03258 0.15 +0.5
599,608 + MPMX19_03258 0.15 +0.5
599,608 + MPMX19_03258 0.15 -0.3
599,608 + MPMX19_03258 0.15 +0.7
599,609 - MPMX19_03258 0.15 +0.1
599,609 - MPMX19_03258 0.15 -2.0
599,609 - MPMX19_03258 0.15 -0.2
599,647 + MPMX19_03258 0.19 -0.0
599,647 + MPMX19_03258 0.19 -0.2
599,647 + MPMX19_03258 0.19 +0.5
599,647 + MPMX19_03258 0.19 -0.5
599,647 + MPMX19_03258 0.19 +0.3
599,648 - MPMX19_03258 0.19 -1.3
599,648 - MPMX19_03258 0.19 +0.2
599,648 - MPMX19_03258 0.19 -0.4
599,648 - MPMX19_03258 0.19 -0.5
599,648 - MPMX19_03258 0.19 -1.4
599,648 - MPMX19_03258 0.19 -1.6
599,905 + MPMX19_03258 0.49 -1.8
599,905 + MPMX19_03258 0.49 -1.0
599,905 + MPMX19_03258 0.49 -2.1
599,905 + MPMX19_03258 0.49 -0.7
599,906 - MPMX19_03258 0.49 -1.9
599,906 - MPMX19_03258 0.49 +0.4
599,906 - MPMX19_03258 0.49 +0.3
599,906 - MPMX19_03258 0.49 +0.7
599,906 - MPMX19_03258 0.49 -1.3
599,906 - MPMX19_03258 0.49 -0.3
599,911 + MPMX19_03258 0.49 -0.8
599,911 + MPMX19_03258 0.49 -1.6
599,911 + MPMX19_03258 0.49 -0.5
599,911 + MPMX19_03258 0.49 -0.3
599,911 + MPMX19_03258 0.49 -0.4
599,911 + MPMX19_03258 0.49 +1.0
599,911 + MPMX19_03258 0.49 +0.1
599,911 + MPMX19_03258 0.49 -0.3
599,911 + MPMX19_03258 0.49 +1.7
599,911 + MPMX19_03258 0.49 +0.7
599,911 + MPMX19_03258 0.49 +0.1
599,911 + MPMX19_03258 0.49 -0.0
599,911 + MPMX19_03258 0.49 +0.6
599,912 - MPMX19_03258 0.50 -0.1
599,912 - MPMX19_03258 0.50 -1.3
599,912 - MPMX19_03258 0.50 +0.2
599,912 - MPMX19_03258 0.50 +0.4
599,912 - MPMX19_03258 0.50 -0.3
599,912 - MPMX19_03258 0.50 -0.0
599,912 - MPMX19_03258 0.50 -0.6
599,912 - MPMX19_03258 0.50 -0.7
599,912 - MPMX19_03258 0.50 -0.3
599,912 - MPMX19_03258 0.50 +1.1
599,912 - MPMX19_03258 0.50 -0.9
599,912 - MPMX19_03258 0.50 -0.5
599,912 - MPMX19_03258 0.50 +0.5
600,211 + MPMX19_03258 0.84 +0.7
600,211 + MPMX19_03258 0.84 -0.4
600,211 + MPMX19_03258 0.84 -0.5
600,211 + MPMX19_03258 0.84 -1.6
600,211 + MPMX19_03258 0.84 -0.9
600,211 + MPMX19_03258 0.84 -1.1
600,211 + MPMX19_03258 0.84 -0.6
600,211 + MPMX19_03258 0.84 -1.1
600,211 + MPMX19_03258 0.84 -1.5
600,212 - MPMX19_03258 0.84 +0.2
600,212 - MPMX19_03258 0.84 -0.4
600,212 - MPMX19_03258 0.84 -0.3
600,212 - MPMX19_03258 0.84 +0.9
600,212 - MPMX19_03258 0.84 +1.1
600,212 - MPMX19_03258 0.84 -1.5
600,212 - MPMX19_03258 0.84 -2.3
600,212 - MPMX19_03258 0.84 -0.4
600,212 - MPMX19_03258 0.84 -1.0
600,212 - MPMX19_03258 0.84 +0.1
600,334 + +0.9
600,334 + -0.3
600,335 - +0.2

Or see this region's nucleotide sequence