Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03251

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03250 and MPMX19_03251 are separated by 266 nucleotidesMPMX19_03251 and MPMX19_03252 are separated by 268 nucleotidesMPMX19_03252 and MPMX19_03253 are separated by 2 nucleotides MPMX19_03250: MPMX19_03250 - Glycine cleavage system transcriptional activator, at 590,886 to 591,812 _03250 MPMX19_03251: MPMX19_03251 - hypothetical protein, at 592,079 to 592,546 _03251 MPMX19_03252: MPMX19_03252 - hypothetical protein, at 592,815 to 593,522 _03252 MPMX19_03253: MPMX19_03253 - 4-hydroxy-tetrahydrodipicolinate synthase, at 593,525 to 594,436 _03253 Position (kb) 592 593Strain fitness (log2 ratio) -2 -1 0 1at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.307 kb on + strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.308 kb on - strand, within MPMX19_03250at 591.591 kb on - strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.595 kb on + strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.596 kb on - strand, within MPMX19_03250at 591.911 kb on + strandat 591.911 kb on + strandat 591.981 kb on + strandat 591.982 kb on - strandat 591.982 kb on - strandat 591.982 kb on - strandat 591.982 kb on - strandat 592.090 kb on + strandat 592.090 kb on + strandat 592.090 kb on + strandat 592.091 kb on - strandat 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.190 kb on + strand, within MPMX19_03251at 592.191 kb on - strand, within MPMX19_03251at 592.191 kb on - strand, within MPMX19_03251at 592.191 kb on - strand, within MPMX19_03251at 592.295 kb on + strand, within MPMX19_03251at 592.295 kb on + strand, within MPMX19_03251at 592.295 kb on + strand, within MPMX19_03251at 592.296 kb on - strand, within MPMX19_03251at 592.792 kb on - strandat 592.839 kb on + strandat 592.920 kb on + strand, within MPMX19_03252at 592.920 kb on + strand, within MPMX19_03252at 592.920 kb on + strand, within MPMX19_03252at 592.920 kb on + strand, within MPMX19_03252at 592.921 kb on - strand, within MPMX19_03252at 592.977 kb on + strand, within MPMX19_03252at 592.978 kb on - strand, within MPMX19_03252at 593.025 kb on + strand, within MPMX19_03252at 593.025 kb on + strand, within MPMX19_03252at 593.026 kb on - strand, within MPMX19_03252at 593.067 kb on + strand, within MPMX19_03252at 593.067 kb on + strand, within MPMX19_03252at 593.067 kb on + strand, within MPMX19_03252at 593.068 kb on - strand, within MPMX19_03252at 593.068 kb on - strand, within MPMX19_03252at 593.068 kb on - strand, within MPMX19_03252at 593.270 kb on - strand, within MPMX19_03252at 593.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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591,307 + MPMX19_03250 0.45 -1.2
591,307 + MPMX19_03250 0.45 -0.3
591,307 + MPMX19_03250 0.45 +0.4
591,307 + MPMX19_03250 0.45 +0.3
591,307 + MPMX19_03250 0.45 +0.3
591,308 - MPMX19_03250 0.46 +0.8
591,308 - MPMX19_03250 0.46 +0.3
591,308 - MPMX19_03250 0.46 +0.8
591,308 - MPMX19_03250 0.46 -0.5
591,591 - MPMX19_03250 0.76 -1.0
591,595 + MPMX19_03250 0.76 -0.2
591,595 + MPMX19_03250 0.76 -2.0
591,595 + MPMX19_03250 0.76 +0.7
591,595 + MPMX19_03250 0.76 +0.1
591,596 - MPMX19_03250 0.77 -1.0
591,596 - MPMX19_03250 0.77 +0.6
591,596 - MPMX19_03250 0.77 -1.5
591,596 - MPMX19_03250 0.77 +0.7
591,596 - MPMX19_03250 0.77 +0.3
591,596 - MPMX19_03250 0.77 +1.7
591,596 - MPMX19_03250 0.77 -1.7
591,911 + +0.3
591,911 + -1.6
591,981 + -0.7
591,982 - +0.3
591,982 - -0.6
591,982 - +0.0
591,982 - -0.5
592,090 + -0.9
592,090 + +0.7
592,090 + -1.3
592,091 - +1.7
592,190 + MPMX19_03251 0.24 -0.8
592,190 + MPMX19_03251 0.24 -0.0
592,190 + MPMX19_03251 0.24 -0.6
592,190 + MPMX19_03251 0.24 -1.7
592,190 + MPMX19_03251 0.24 -0.7
592,190 + MPMX19_03251 0.24 -0.6
592,191 - MPMX19_03251 0.24 -1.1
592,191 - MPMX19_03251 0.24 -2.0
592,191 - MPMX19_03251 0.24 -1.0
592,295 + MPMX19_03251 0.46 +0.5
592,295 + MPMX19_03251 0.46 -0.5
592,295 + MPMX19_03251 0.46 -0.8
592,296 - MPMX19_03251 0.46 -0.4
592,792 - -1.2
592,839 + +1.3
592,920 + MPMX19_03252 0.15 -0.6
592,920 + MPMX19_03252 0.15 -1.5
592,920 + MPMX19_03252 0.15 -1.8
592,920 + MPMX19_03252 0.15 -0.7
592,921 - MPMX19_03252 0.15 +1.0
592,977 + MPMX19_03252 0.23 -1.1
592,978 - MPMX19_03252 0.23 -0.4
593,025 + MPMX19_03252 0.30 -2.3
593,025 + MPMX19_03252 0.30 +0.7
593,026 - MPMX19_03252 0.30 -1.5
593,067 + MPMX19_03252 0.36 -1.1
593,067 + MPMX19_03252 0.36 -0.8
593,067 + MPMX19_03252 0.36 -1.1
593,068 - MPMX19_03252 0.36 -0.1
593,068 - MPMX19_03252 0.36 -0.5
593,068 - MPMX19_03252 0.36 -0.4
593,270 - MPMX19_03252 0.64 -2.6
593,540 - -0.3

Or see this region's nucleotide sequence