Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03230

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03229 and MPMX19_03230 are separated by 42 nucleotidesMPMX19_03230 and MPMX19_03231 are separated by 105 nucleotides MPMX19_03229: MPMX19_03229 - hypothetical protein, at 529,433 to 530,740 _03229 MPMX19_03230: MPMX19_03230 - hypothetical protein, at 530,783 to 531,835 _03230 MPMX19_03231: MPMX19_03231 - Ferrichrome outer membrane transporter/phage receptor, at 531,941 to 534,208 _03231 Position (kb) 530 531 532Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 529.846 kb on + strand, within MPMX19_03229at 529.847 kb on - strand, within MPMX19_03229at 529.847 kb on - strand, within MPMX19_03229at 529.847 kb on - strand, within MPMX19_03229at 529.883 kb on + strand, within MPMX19_03229at 529.883 kb on + strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.884 kb on - strand, within MPMX19_03229at 529.919 kb on + strand, within MPMX19_03229at 529.944 kb on - strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.958 kb on + strand, within MPMX19_03229at 529.959 kb on - strand, within MPMX19_03229at 529.959 kb on - strand, within MPMX19_03229at 530.069 kb on + strand, within MPMX19_03229at 530.069 kb on + strand, within MPMX19_03229at 530.070 kb on - strand, within MPMX19_03229at 530.070 kb on - strand, within MPMX19_03229at 530.070 kb on - strand, within MPMX19_03229at 530.171 kb on + strand, within MPMX19_03229at 530.171 kb on + strand, within MPMX19_03229at 530.172 kb on - strand, within MPMX19_03229at 530.255 kb on + strand, within MPMX19_03229at 530.282 kb on + strand, within MPMX19_03229at 530.282 kb on + strand, within MPMX19_03229at 530.283 kb on - strand, within MPMX19_03229at 530.283 kb on - strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.294 kb on + strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.295 kb on - strand, within MPMX19_03229at 530.690 kb on + strandat 530.690 kb on + strandat 530.690 kb on + strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.691 kb on - strandat 530.797 kb on + strandat 530.798 kb on - strandat 531.233 kb on + strand, within MPMX19_03230at 531.233 kb on + strand, within MPMX19_03230at 531.233 kb on + strand, within MPMX19_03230at 531.233 kb on + strand, within MPMX19_03230at 531.233 kb on + strand, within MPMX19_03230at 531.234 kb on - strand, within MPMX19_03230at 531.234 kb on - strand, within MPMX19_03230at 531.234 kb on - strand, within MPMX19_03230at 531.383 kb on + strand, within MPMX19_03230at 531.384 kb on - strand, within MPMX19_03230at 531.455 kb on + strand, within MPMX19_03230at 531.456 kb on - strand, within MPMX19_03230at 531.456 kb on - strand, within MPMX19_03230at 531.467 kb on + strand, within MPMX19_03230at 531.467 kb on + strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.468 kb on - strand, within MPMX19_03230at 531.489 kb on + strand, within MPMX19_03230at 531.490 kb on - strand, within MPMX19_03230at 531.490 kb on - strand, within MPMX19_03230at 531.827 kb on + strandat 531.827 kb on + strandat 531.828 kb on - strandat 531.828 kb on - strandat 531.831 kb on + strandat 531.831 kb on + strandat 531.831 kb on + strandat 531.831 kb on + strandat 531.831 kb on + strandat 531.831 kb on + strandat 531.831 kb on + strandat 531.832 kb on - strandat 531.832 kb on - strandat 531.832 kb on - strandat 531.832 kb on - strandat 531.832 kb on - strandat 531.847 kb on + strandat 531.848 kb on - strandat 531.848 kb on - strandat 531.848 kb on - strandat 531.850 kb on + strandat 531.850 kb on + strandat 531.850 kb on + strandat 531.850 kb on + strandat 531.851 kb on - strandat 531.873 kb on - strandat 531.873 kb on - strandat 531.916 kb on + strandat 531.916 kb on + strandat 532.196 kb on + strand, within MPMX19_03231at 532.196 kb on + strand, within MPMX19_03231at 532.196 kb on + strand, within MPMX19_03231at 532.196 kb on + strand, within MPMX19_03231at 532.196 kb on + strand, within MPMX19_03231at 532.196 kb on + strand, within MPMX19_03231at 532.196 kb on + strand, within MPMX19_03231at 532.196 kb on + strand, within MPMX19_03231at 532.196 kb on + strand, within MPMX19_03231at 532.196 kb on + strand, within MPMX19_03231at 532.197 kb on - strand, within MPMX19_03231at 532.197 kb on - strand, within MPMX19_03231at 532.197 kb on - strand, within MPMX19_03231at 532.197 kb on - strand, within MPMX19_03231at 532.197 kb on - strand, within MPMX19_03231at 532.197 kb on - strand, within MPMX19_03231at 532.329 kb on - strand, within MPMX19_03231at 532.329 kb on - strand, within MPMX19_03231at 532.329 kb on - strand, within MPMX19_03231at 532.329 kb on - strand, within MPMX19_03231at 532.425 kb on - strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.457 kb on + strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.458 kb on - strand, within MPMX19_03231at 532.619 kb on + strand, within MPMX19_03231at 532.619 kb on + strand, within MPMX19_03231at 532.619 kb on + strand, within MPMX19_03231at 532.619 kb on + strand, within MPMX19_03231at 532.619 kb on + strand, within MPMX19_03231at 532.619 kb on + strand, within MPMX19_03231at 532.620 kb on - strand, within MPMX19_03231at 532.620 kb on - strand, within MPMX19_03231at 532.620 kb on - strand, within MPMX19_03231at 532.682 kb on + strand, within MPMX19_03231at 532.683 kb on - strand, within MPMX19_03231at 532.748 kb on + strand, within MPMX19_03231at 532.748 kb on + strand, within MPMX19_03231at 532.748 kb on + strand, within MPMX19_03231at 532.748 kb on + strand, within MPMX19_03231at 532.748 kb on + strand, within MPMX19_03231at 532.749 kb on - strand, within MPMX19_03231at 532.749 kb on - strand, within MPMX19_03231at 532.749 kb on - strand, within MPMX19_03231at 532.749 kb on - strand, within MPMX19_03231at 532.749 kb on - strand, within MPMX19_03231at 532.749 kb on - strand, within MPMX19_03231at 532.811 kb on + strand, within MPMX19_03231

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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529,846 + MPMX19_03229 0.32 -0.3
529,847 - MPMX19_03229 0.32 -0.5
529,847 - MPMX19_03229 0.32 +0.8
529,847 - MPMX19_03229 0.32 +1.3
529,883 + MPMX19_03229 0.34 -0.6
529,883 + MPMX19_03229 0.34 +0.1
529,884 - MPMX19_03229 0.34 -1.3
529,884 - MPMX19_03229 0.34 +0.2
529,884 - MPMX19_03229 0.34 +1.0
529,884 - MPMX19_03229 0.34 -1.2
529,884 - MPMX19_03229 0.34 +0.7
529,884 - MPMX19_03229 0.34 +0.1
529,884 - MPMX19_03229 0.34 -3.3
529,884 - MPMX19_03229 0.34 -1.0
529,884 - MPMX19_03229 0.34 -0.5
529,919 + MPMX19_03229 0.37 +0.4
529,944 - MPMX19_03229 0.39 -2.0
529,958 + MPMX19_03229 0.40 +0.4
529,958 + MPMX19_03229 0.40 +0.2
529,958 + MPMX19_03229 0.40 -0.4
529,958 + MPMX19_03229 0.40 -0.5
529,958 + MPMX19_03229 0.40 +0.1
529,958 + MPMX19_03229 0.40 +1.7
529,958 + MPMX19_03229 0.40 -0.8
529,959 - MPMX19_03229 0.40 -0.3
529,959 - MPMX19_03229 0.40 +0.7
530,069 + MPMX19_03229 0.49 -0.7
530,069 + MPMX19_03229 0.49 -1.3
530,070 - MPMX19_03229 0.49 +0.4
530,070 - MPMX19_03229 0.49 +1.0
530,070 - MPMX19_03229 0.49 -1.9
530,171 + MPMX19_03229 0.56 -0.9
530,171 + MPMX19_03229 0.56 -0.5
530,172 - MPMX19_03229 0.56 -0.3
530,255 + MPMX19_03229 0.63 -1.3
530,282 + MPMX19_03229 0.65 -0.2
530,282 + MPMX19_03229 0.65 +0.3
530,283 - MPMX19_03229 0.65 -1.1
530,283 - MPMX19_03229 0.65 +0.0
530,294 + MPMX19_03229 0.66 -0.3
530,294 + MPMX19_03229 0.66 -0.9
530,294 + MPMX19_03229 0.66 -0.6
530,294 + MPMX19_03229 0.66 +0.0
530,294 + MPMX19_03229 0.66 +0.1
530,294 + MPMX19_03229 0.66 -0.1
530,294 + MPMX19_03229 0.66 -1.6
530,294 + MPMX19_03229 0.66 +0.9
530,294 + MPMX19_03229 0.66 -0.5
530,294 + MPMX19_03229 0.66 -1.0
530,294 + MPMX19_03229 0.66 -1.9
530,294 + MPMX19_03229 0.66 +0.0
530,294 + MPMX19_03229 0.66 +0.9
530,294 + MPMX19_03229 0.66 -0.6
530,294 + MPMX19_03229 0.66 -0.5
530,294 + MPMX19_03229 0.66 -0.0
530,294 + MPMX19_03229 0.66 -0.9
530,294 + MPMX19_03229 0.66 -0.2
530,294 + MPMX19_03229 0.66 -0.1
530,294 + MPMX19_03229 0.66 -0.6
530,295 - MPMX19_03229 0.66 +0.2
530,295 - MPMX19_03229 0.66 +0.3
530,295 - MPMX19_03229 0.66 -0.2
530,295 - MPMX19_03229 0.66 +0.1
530,295 - MPMX19_03229 0.66 -0.9
530,295 - MPMX19_03229 0.66 -0.8
530,295 - MPMX19_03229 0.66 -1.8
530,295 - MPMX19_03229 0.66 -0.6
530,295 - MPMX19_03229 0.66 +0.2
530,295 - MPMX19_03229 0.66 +0.0
530,295 - MPMX19_03229 0.66 +0.6
530,295 - MPMX19_03229 0.66 -0.9
530,295 - MPMX19_03229 0.66 -0.9
530,295 - MPMX19_03229 0.66 +0.1
530,295 - MPMX19_03229 0.66 -2.5
530,295 - MPMX19_03229 0.66 -1.9
530,295 - MPMX19_03229 0.66 +0.5
530,295 - MPMX19_03229 0.66 +0.3
530,295 - MPMX19_03229 0.66 -0.1
530,295 - MPMX19_03229 0.66 -1.5
530,295 - MPMX19_03229 0.66 -0.2
530,295 - MPMX19_03229 0.66 -0.7
530,295 - MPMX19_03229 0.66 +0.6
530,295 - MPMX19_03229 0.66 -2.5
530,295 - MPMX19_03229 0.66 -0.4
530,295 - MPMX19_03229 0.66 -1.2
530,295 - MPMX19_03229 0.66 -0.0
530,295 - MPMX19_03229 0.66 -1.0
530,295 - MPMX19_03229 0.66 -1.8
530,295 - MPMX19_03229 0.66 -0.4
530,295 - MPMX19_03229 0.66 -0.3
530,295 - MPMX19_03229 0.66 -0.1
530,295 - MPMX19_03229 0.66 -0.7
530,295 - MPMX19_03229 0.66 -0.5
530,690 + -0.6
530,690 + -0.1
530,690 + +1.3
530,691 - -1.6
530,691 - -1.9
530,691 - -0.4
530,691 - -1.1
530,691 - -0.3
530,691 - -0.6
530,691 - +0.9
530,797 + -1.3
530,798 - -1.6
531,233 + MPMX19_03230 0.43 +0.5
531,233 + MPMX19_03230 0.43 -1.8
531,233 + MPMX19_03230 0.43 -0.2
531,233 + MPMX19_03230 0.43 -0.5
531,233 + MPMX19_03230 0.43 +0.4
531,234 - MPMX19_03230 0.43 -0.5
531,234 - MPMX19_03230 0.43 -0.9
531,234 - MPMX19_03230 0.43 -0.9
531,383 + MPMX19_03230 0.57 -1.1
531,384 - MPMX19_03230 0.57 +0.0
531,455 + MPMX19_03230 0.64 -1.5
531,456 - MPMX19_03230 0.64 -1.3
531,456 - MPMX19_03230 0.64 -1.1
531,467 + MPMX19_03230 0.65 -2.0
531,467 + MPMX19_03230 0.65 +0.3
531,468 - MPMX19_03230 0.65 -0.7
531,468 - MPMX19_03230 0.65 -0.1
531,468 - MPMX19_03230 0.65 -0.9
531,468 - MPMX19_03230 0.65 -0.2
531,468 - MPMX19_03230 0.65 +0.9
531,489 + MPMX19_03230 0.67 -0.3
531,490 - MPMX19_03230 0.67 -0.9
531,490 - MPMX19_03230 0.67 +0.5
531,827 + +0.4
531,827 + -1.8
531,828 - +0.1
531,828 - -0.9
531,831 + -0.5
531,831 + -1.2
531,831 + -0.3
531,831 + +0.7
531,831 + -1.4
531,831 + -1.0
531,831 + -0.9
531,832 - -2.4
531,832 - +0.1
531,832 - -0.8
531,832 - -1.1
531,832 - +0.7
531,847 + -0.0
531,848 - -0.7
531,848 - -0.2
531,848 - +1.0
531,850 + -1.9
531,850 + +1.2
531,850 + -1.0
531,850 + +0.3
531,851 - -1.2
531,873 - -0.4
531,873 - +0.2
531,916 + -1.2
531,916 + -0.2
532,196 + MPMX19_03231 0.11 -1.3
532,196 + MPMX19_03231 0.11 +0.1
532,196 + MPMX19_03231 0.11 +0.0
532,196 + MPMX19_03231 0.11 -0.6
532,196 + MPMX19_03231 0.11 +1.0
532,196 + MPMX19_03231 0.11 -1.3
532,196 + MPMX19_03231 0.11 -0.2
532,196 + MPMX19_03231 0.11 -0.6
532,196 + MPMX19_03231 0.11 -0.7
532,196 + MPMX19_03231 0.11 -0.6
532,197 - MPMX19_03231 0.11 -2.0
532,197 - MPMX19_03231 0.11 -0.3
532,197 - MPMX19_03231 0.11 -0.2
532,197 - MPMX19_03231 0.11 +0.5
532,197 - MPMX19_03231 0.11 +0.9
532,197 - MPMX19_03231 0.11 -1.5
532,329 - MPMX19_03231 0.17 -1.9
532,329 - MPMX19_03231 0.17 -1.8
532,329 - MPMX19_03231 0.17 -2.6
532,329 - MPMX19_03231 0.17 -0.5
532,425 - MPMX19_03231 0.21 -0.4
532,457 + MPMX19_03231 0.23 -0.0
532,457 + MPMX19_03231 0.23 -2.0
532,457 + MPMX19_03231 0.23 -0.2
532,457 + MPMX19_03231 0.23 -2.4
532,457 + MPMX19_03231 0.23 +0.3
532,457 + MPMX19_03231 0.23 -2.0
532,457 + MPMX19_03231 0.23 -0.9
532,457 + MPMX19_03231 0.23 -2.0
532,457 + MPMX19_03231 0.23 -1.2
532,457 + MPMX19_03231 0.23 -0.9
532,457 + MPMX19_03231 0.23 +0.6
532,458 - MPMX19_03231 0.23 -0.7
532,458 - MPMX19_03231 0.23 -1.1
532,458 - MPMX19_03231 0.23 -0.0
532,458 - MPMX19_03231 0.23 -1.5
532,458 - MPMX19_03231 0.23 -1.3
532,458 - MPMX19_03231 0.23 -0.2
532,458 - MPMX19_03231 0.23 -0.3
532,458 - MPMX19_03231 0.23 -1.2
532,458 - MPMX19_03231 0.23 -0.9
532,458 - MPMX19_03231 0.23 -0.7
532,458 - MPMX19_03231 0.23 -0.2
532,619 + MPMX19_03231 0.30 +0.3
532,619 + MPMX19_03231 0.30 -0.9
532,619 + MPMX19_03231 0.30 -1.0
532,619 + MPMX19_03231 0.30 -0.3
532,619 + MPMX19_03231 0.30 +0.7
532,619 + MPMX19_03231 0.30 +0.3
532,620 - MPMX19_03231 0.30 -0.0
532,620 - MPMX19_03231 0.30 -0.2
532,620 - MPMX19_03231 0.30 -0.8
532,682 + MPMX19_03231 0.33 +2.3
532,683 - MPMX19_03231 0.33 +2.7
532,748 + MPMX19_03231 0.36 -2.5
532,748 + MPMX19_03231 0.36 +0.4
532,748 + MPMX19_03231 0.36 -1.7
532,748 + MPMX19_03231 0.36 -0.2
532,748 + MPMX19_03231 0.36 -0.2
532,749 - MPMX19_03231 0.36 -0.5
532,749 - MPMX19_03231 0.36 -0.9
532,749 - MPMX19_03231 0.36 -0.1
532,749 - MPMX19_03231 0.36 -0.3
532,749 - MPMX19_03231 0.36 +1.7
532,749 - MPMX19_03231 0.36 -0.1
532,811 + MPMX19_03231 0.38 -0.4

Or see this region's nucleotide sequence