Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03210

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03209 and MPMX19_03210 are separated by 1 nucleotidesMPMX19_03210 and MPMX19_03211 are separated by 22 nucleotides MPMX19_03209: MPMX19_03209 - Purine ribonucleoside efflux pump NepI, at 508,118 to 509,302 _03209 MPMX19_03210: MPMX19_03210 - Haloalkane dehalogenase, at 509,304 to 510,317 _03210 MPMX19_03211: MPMX19_03211 - hypothetical protein, at 510,340 to 511,605 _03211 Position (kb) 509 510 511Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 508.802 kb on + strand, within MPMX19_03209at 508.802 kb on + strand, within MPMX19_03209at 508.802 kb on + strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.803 kb on - strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.808 kb on + strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.809 kb on - strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.877 kb on + strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 508.878 kb on - strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.087 kb on + strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.088 kb on - strand, within MPMX19_03209at 509.505 kb on + strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.506 kb on - strand, within MPMX19_03210at 509.633 kb on + strand, within MPMX19_03210at 509.664 kb on + strand, within MPMX19_03210at 509.665 kb on - strand, within MPMX19_03210at 509.665 kb on - strand, within MPMX19_03210at 509.665 kb on - strand, within MPMX19_03210at 509.665 kb on - strand, within MPMX19_03210at 509.718 kb on + strand, within MPMX19_03210at 509.718 kb on + strand, within MPMX19_03210at 509.719 kb on - strand, within MPMX19_03210at 509.719 kb on - strand, within MPMX19_03210at 509.719 kb on - strand, within MPMX19_03210at 509.772 kb on + strand, within MPMX19_03210at 509.772 kb on + strand, within MPMX19_03210at 509.772 kb on + strand, within MPMX19_03210at 509.773 kb on - strand, within MPMX19_03210at 509.773 kb on - strand, within MPMX19_03210at 509.784 kb on + strand, within MPMX19_03210at 509.784 kb on + strand, within MPMX19_03210at 509.907 kb on + strand, within MPMX19_03210at 509.907 kb on + strand, within MPMX19_03210at 509.907 kb on + strand, within MPMX19_03210at 509.907 kb on + strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 509.908 kb on - strand, within MPMX19_03210at 510.001 kb on - strand, within MPMX19_03210at 510.001 kb on - strand, within MPMX19_03210at 510.048 kb on + strand, within MPMX19_03210at 510.048 kb on + strand, within MPMX19_03210at 510.048 kb on + strand, within MPMX19_03210at 510.049 kb on - strand, within MPMX19_03210at 510.049 kb on - strand, within MPMX19_03210at 510.049 kb on - strand, within MPMX19_03210at 510.060 kb on + strand, within MPMX19_03210at 510.060 kb on + strand, within MPMX19_03210at 510.061 kb on - strand, within MPMX19_03210at 510.061 kb on - strand, within MPMX19_03210at 510.061 kb on - strand, within MPMX19_03210at 510.061 kb on - strand, within MPMX19_03210at 510.099 kb on + strand, within MPMX19_03210at 510.100 kb on - strand, within MPMX19_03210at 510.100 kb on - strand, within MPMX19_03210at 510.100 kb on - strand, within MPMX19_03210at 510.100 kb on - strand, within MPMX19_03210at 510.138 kb on + strand, within MPMX19_03210at 510.138 kb on + strand, within MPMX19_03210at 510.138 kb on + strand, within MPMX19_03210at 510.138 kb on + strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.139 kb on - strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.183 kb on + strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.184 kb on - strand, within MPMX19_03210at 510.234 kb on + strandat 510.234 kb on + strandat 510.316 kb on - strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.462 kb on + strandat 510.463 kb on - strandat 510.473 kb on + strand, within MPMX19_03211at 510.473 kb on + strand, within MPMX19_03211at 510.616 kb on + strand, within MPMX19_03211at 510.617 kb on - strand, within MPMX19_03211at 510.617 kb on - strand, within MPMX19_03211at 510.631 kb on + strand, within MPMX19_03211at 510.631 kb on + strand, within MPMX19_03211at 510.632 kb on - strand, within MPMX19_03211at 510.632 kb on - strand, within MPMX19_03211at 511.165 kb on + strand, within MPMX19_03211at 511.165 kb on + strand, within MPMX19_03211at 511.165 kb on + strand, within MPMX19_03211at 511.166 kb on - strand, within MPMX19_03211at 511.166 kb on - strand, within MPMX19_03211at 511.205 kb on - strand, within MPMX19_03211at 511.246 kb on + strand, within MPMX19_03211at 511.247 kb on - strand, within MPMX19_03211at 511.247 kb on - strand, within MPMX19_03211

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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508,802 + MPMX19_03209 0.58 -2.7
508,802 + MPMX19_03209 0.58 -0.5
508,802 + MPMX19_03209 0.58 -0.7
508,803 - MPMX19_03209 0.58 +0.5
508,803 - MPMX19_03209 0.58 -0.9
508,803 - MPMX19_03209 0.58 -0.8
508,803 - MPMX19_03209 0.58 -2.0
508,803 - MPMX19_03209 0.58 -1.1
508,803 - MPMX19_03209 0.58 -0.2
508,803 - MPMX19_03209 0.58 -0.3
508,803 - MPMX19_03209 0.58 -1.5
508,808 + MPMX19_03209 0.58 +0.6
508,808 + MPMX19_03209 0.58 -1.2
508,808 + MPMX19_03209 0.58 -0.8
508,808 + MPMX19_03209 0.58 -0.8
508,808 + MPMX19_03209 0.58 -0.6
508,808 + MPMX19_03209 0.58 -1.5
508,809 - MPMX19_03209 0.58 -0.4
508,809 - MPMX19_03209 0.58 -1.6
508,809 - MPMX19_03209 0.58 +0.1
508,809 - MPMX19_03209 0.58 -1.2
508,809 - MPMX19_03209 0.58 -0.8
508,809 - MPMX19_03209 0.58 -0.1
508,809 - MPMX19_03209 0.58 -0.5
508,809 - MPMX19_03209 0.58 -1.8
508,809 - MPMX19_03209 0.58 -1.5
508,877 + MPMX19_03209 0.64 -2.1
508,877 + MPMX19_03209 0.64 +0.7
508,877 + MPMX19_03209 0.64 -1.1
508,877 + MPMX19_03209 0.64 -0.3
508,877 + MPMX19_03209 0.64 +1.2
508,877 + MPMX19_03209 0.64 -0.6
508,877 + MPMX19_03209 0.64 -0.8
508,877 + MPMX19_03209 0.64 +0.7
508,878 - MPMX19_03209 0.64 -0.6
508,878 - MPMX19_03209 0.64 +0.2
508,878 - MPMX19_03209 0.64 -0.4
508,878 - MPMX19_03209 0.64 -1.5
508,878 - MPMX19_03209 0.64 +0.2
508,878 - MPMX19_03209 0.64 -0.1
508,878 - MPMX19_03209 0.64 +0.5
508,878 - MPMX19_03209 0.64 -1.3
508,878 - MPMX19_03209 0.64 -0.3
508,878 - MPMX19_03209 0.64 +0.7
508,878 - MPMX19_03209 0.64 -0.5
509,087 + MPMX19_03209 0.82 -0.4
509,087 + MPMX19_03209 0.82 +0.1
509,087 + MPMX19_03209 0.82 -1.8
509,087 + MPMX19_03209 0.82 +0.2
509,087 + MPMX19_03209 0.82 +0.0
509,087 + MPMX19_03209 0.82 -1.6
509,087 + MPMX19_03209 0.82 -1.2
509,087 + MPMX19_03209 0.82 +0.0
509,087 + MPMX19_03209 0.82 -2.2
509,087 + MPMX19_03209 0.82 -0.6
509,087 + MPMX19_03209 0.82 -1.6
509,087 + MPMX19_03209 0.82 +0.2
509,087 + MPMX19_03209 0.82 -0.5
509,087 + MPMX19_03209 0.82 -0.6
509,087 + MPMX19_03209 0.82 -1.2
509,087 + MPMX19_03209 0.82 +1.1
509,087 + MPMX19_03209 0.82 +0.5
509,087 + MPMX19_03209 0.82 -1.2
509,087 + MPMX19_03209 0.82 -0.5
509,087 + MPMX19_03209 0.82 -0.8
509,087 + MPMX19_03209 0.82 +0.8
509,087 + MPMX19_03209 0.82 -0.2
509,087 + MPMX19_03209 0.82 -0.5
509,088 - MPMX19_03209 0.82 -0.1
509,088 - MPMX19_03209 0.82 -0.7
509,088 - MPMX19_03209 0.82 +0.5
509,088 - MPMX19_03209 0.82 -2.0
509,088 - MPMX19_03209 0.82 -1.9
509,088 - MPMX19_03209 0.82 -0.8
509,088 - MPMX19_03209 0.82 +0.1
509,088 - MPMX19_03209 0.82 +0.4
509,088 - MPMX19_03209 0.82 -0.3
509,088 - MPMX19_03209 0.82 +0.5
509,088 - MPMX19_03209 0.82 +0.4
509,088 - MPMX19_03209 0.82 -0.8
509,088 - MPMX19_03209 0.82 -1.5
509,088 - MPMX19_03209 0.82 -1.1
509,088 - MPMX19_03209 0.82 -2.9
509,088 - MPMX19_03209 0.82 -1.2
509,088 - MPMX19_03209 0.82 +0.1
509,088 - MPMX19_03209 0.82 -1.1
509,088 - MPMX19_03209 0.82 +0.7
509,088 - MPMX19_03209 0.82 -0.1
509,088 - MPMX19_03209 0.82 -1.0
509,088 - MPMX19_03209 0.82 -0.2
509,088 - MPMX19_03209 0.82 -0.0
509,088 - MPMX19_03209 0.82 -1.1
509,088 - MPMX19_03209 0.82 -1.0
509,088 - MPMX19_03209 0.82 +0.3
509,088 - MPMX19_03209 0.82 -1.3
509,088 - MPMX19_03209 0.82 -0.1
509,088 - MPMX19_03209 0.82 -0.3
509,505 + MPMX19_03210 0.20 -0.7
509,506 - MPMX19_03210 0.20 -1.4
509,506 - MPMX19_03210 0.20 +0.3
509,506 - MPMX19_03210 0.20 +0.6
509,506 - MPMX19_03210 0.20 -1.0
509,506 - MPMX19_03210 0.20 -0.4
509,633 + MPMX19_03210 0.32 -0.3
509,664 + MPMX19_03210 0.36 -0.5
509,665 - MPMX19_03210 0.36 -1.2
509,665 - MPMX19_03210 0.36 -1.7
509,665 - MPMX19_03210 0.36 -1.5
509,665 - MPMX19_03210 0.36 -0.9
509,718 + MPMX19_03210 0.41 -1.0
509,718 + MPMX19_03210 0.41 -1.4
509,719 - MPMX19_03210 0.41 -3.2
509,719 - MPMX19_03210 0.41 +0.3
509,719 - MPMX19_03210 0.41 -0.3
509,772 + MPMX19_03210 0.46 -1.0
509,772 + MPMX19_03210 0.46 -0.7
509,772 + MPMX19_03210 0.46 -0.6
509,773 - MPMX19_03210 0.46 -0.0
509,773 - MPMX19_03210 0.46 -1.1
509,784 + MPMX19_03210 0.47 -0.5
509,784 + MPMX19_03210 0.47 -1.3
509,907 + MPMX19_03210 0.59 +0.1
509,907 + MPMX19_03210 0.59 -1.1
509,907 + MPMX19_03210 0.59 -0.8
509,907 + MPMX19_03210 0.59 -1.5
509,908 - MPMX19_03210 0.60 -0.4
509,908 - MPMX19_03210 0.60 -0.3
509,908 - MPMX19_03210 0.60 -0.9
509,908 - MPMX19_03210 0.60 -2.0
509,908 - MPMX19_03210 0.60 +2.3
510,001 - MPMX19_03210 0.69 -0.3
510,001 - MPMX19_03210 0.69 -0.4
510,048 + MPMX19_03210 0.73 -0.5
510,048 + MPMX19_03210 0.73 -0.2
510,048 + MPMX19_03210 0.73 -1.3
510,049 - MPMX19_03210 0.73 -0.4
510,049 - MPMX19_03210 0.73 -0.6
510,049 - MPMX19_03210 0.73 -1.3
510,060 + MPMX19_03210 0.75 -1.1
510,060 + MPMX19_03210 0.75 -0.7
510,061 - MPMX19_03210 0.75 -0.3
510,061 - MPMX19_03210 0.75 -1.6
510,061 - MPMX19_03210 0.75 +1.7
510,061 - MPMX19_03210 0.75 -0.2
510,099 + MPMX19_03210 0.78 -0.7
510,100 - MPMX19_03210 0.79 -2.2
510,100 - MPMX19_03210 0.79 +2.0
510,100 - MPMX19_03210 0.79 +2.3
510,100 - MPMX19_03210 0.79 -2.6
510,138 + MPMX19_03210 0.82 +0.2
510,138 + MPMX19_03210 0.82 -2.1
510,138 + MPMX19_03210 0.82 +0.0
510,138 + MPMX19_03210 0.82 +1.1
510,139 - MPMX19_03210 0.82 -1.3
510,139 - MPMX19_03210 0.82 +0.7
510,139 - MPMX19_03210 0.82 -1.0
510,139 - MPMX19_03210 0.82 -1.7
510,139 - MPMX19_03210 0.82 +0.0
510,139 - MPMX19_03210 0.82 -0.2
510,139 - MPMX19_03210 0.82 -0.9
510,139 - MPMX19_03210 0.82 -0.7
510,183 + MPMX19_03210 0.87 +0.7
510,183 + MPMX19_03210 0.87 +1.0
510,183 + MPMX19_03210 0.87 -1.8
510,183 + MPMX19_03210 0.87 +0.7
510,183 + MPMX19_03210 0.87 -0.2
510,183 + MPMX19_03210 0.87 +2.1
510,184 - MPMX19_03210 0.87 -1.1
510,184 - MPMX19_03210 0.87 -0.5
510,184 - MPMX19_03210 0.87 +0.7
510,184 - MPMX19_03210 0.87 +1.2
510,184 - MPMX19_03210 0.87 +0.8
510,184 - MPMX19_03210 0.87 +0.5
510,184 - MPMX19_03210 0.87 -1.7
510,184 - MPMX19_03210 0.87 -0.7
510,234 + +0.9
510,234 + +0.8
510,316 - -0.6
510,462 + -1.6
510,462 + -0.5
510,462 + -0.0
510,462 + -0.3
510,462 + -0.8
510,462 + -1.3
510,462 + -2.4
510,463 - +0.1
510,473 + MPMX19_03211 0.11 +0.7
510,473 + MPMX19_03211 0.11 +1.0
510,616 + MPMX19_03211 0.22 -1.4
510,617 - MPMX19_03211 0.22 -1.1
510,617 - MPMX19_03211 0.22 -0.2
510,631 + MPMX19_03211 0.23 -0.9
510,631 + MPMX19_03211 0.23 -0.4
510,632 - MPMX19_03211 0.23 -2.2
510,632 - MPMX19_03211 0.23 -0.3
511,165 + MPMX19_03211 0.65 -0.2
511,165 + MPMX19_03211 0.65 +0.4
511,165 + MPMX19_03211 0.65 -2.1
511,166 - MPMX19_03211 0.65 +0.1
511,166 - MPMX19_03211 0.65 -0.3
511,205 - MPMX19_03211 0.68 -2.3
511,246 + MPMX19_03211 0.72 -1.1
511,247 - MPMX19_03211 0.72 -0.1
511,247 - MPMX19_03211 0.72 -1.5

Or see this region's nucleotide sequence