Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03179

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03176 and MPMX19_03177 are separated by 152 nucleotidesMPMX19_03177 and MPMX19_03178 are separated by 85 nucleotidesMPMX19_03178 and MPMX19_03179 are separated by 531 nucleotidesMPMX19_03179 and MPMX19_03180 overlap by 4 nucleotidesMPMX19_03180 and MPMX19_03181 overlap by 4 nucleotidesMPMX19_03181 and MPMX19_03182 are separated by 81 nucleotides MPMX19_03176: MPMX19_03176 - 23S ribosomal RNA, at 471,646 to 474,379 _03176 MPMX19_03177: MPMX19_03177 - 5S ribosomal RNA, at 474,532 to 474,642 _03177 MPMX19_03178: MPMX19_03178 - tRNA-Met, at 474,728 to 474,804 _03178 MPMX19_03179: MPMX19_03179 - hypothetical protein, at 475,336 to 476,007 _03179 MPMX19_03180: MPMX19_03180 - hypothetical protein, at 476,004 to 476,321 _03180 MPMX19_03181: MPMX19_03181 - hypothetical protein, at 476,318 to 476,578 _03181 MPMX19_03182: MPMX19_03182 - hypothetical protein, at 476,660 to 477,553 _03182 Position (kb) 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 475.038 kb on + strandat 475.038 kb on + strandat 475.038 kb on + strandat 475.038 kb on + strandat 475.039 kb on - strandat 475.039 kb on - strandat 475.039 kb on - strandat 475.039 kb on - strandat 475.164 kb on + strandat 475.164 kb on + strandat 475.164 kb on + strandat 475.164 kb on + strandat 475.164 kb on + strandat 475.164 kb on + strandat 475.164 kb on + strandat 475.164 kb on + strandat 475.164 kb on + strandat 475.165 kb on - strandat 475.165 kb on - strandat 475.165 kb on - strandat 475.165 kb on - strandat 475.165 kb on - strandat 475.165 kb on - strandat 475.165 kb on - strandat 475.165 kb on - strandat 475.297 kb on + strandat 475.297 kb on + strandat 475.297 kb on + strandat 475.298 kb on - strandat 475.298 kb on - strandat 475.613 kb on + strand, within MPMX19_03179at 475.613 kb on + strand, within MPMX19_03179at 475.613 kb on + strand, within MPMX19_03179at 475.613 kb on + strand, within MPMX19_03179at 475.613 kb on + strand, within MPMX19_03179at 475.613 kb on + strand, within MPMX19_03179at 475.613 kb on + strand, within MPMX19_03179at 475.613 kb on + strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.614 kb on - strand, within MPMX19_03179at 475.743 kb on + strand, within MPMX19_03179at 475.743 kb on + strand, within MPMX19_03179at 475.743 kb on + strand, within MPMX19_03179at 475.743 kb on + strand, within MPMX19_03179at 475.743 kb on + strand, within MPMX19_03179at 475.744 kb on - strand, within MPMX19_03179at 475.744 kb on - strand, within MPMX19_03179at 475.744 kb on - strand, within MPMX19_03179at 475.744 kb on - strand, within MPMX19_03179at 475.744 kb on - strand, within MPMX19_03179at 475.754 kb on + strand, within MPMX19_03179at 475.754 kb on + strand, within MPMX19_03179at 475.755 kb on - strand, within MPMX19_03179at 475.755 kb on - strand, within MPMX19_03179at 475.755 kb on - strand, within MPMX19_03179at 475.845 kb on - strand, within MPMX19_03179at 475.845 kb on - strand, within MPMX19_03179at 475.845 kb on - strand, within MPMX19_03179at 475.850 kb on + strand, within MPMX19_03179at 475.850 kb on + strand, within MPMX19_03179at 475.851 kb on - strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.869 kb on + strand, within MPMX19_03179at 475.870 kb on - strand, within MPMX19_03179at 475.870 kb on - strand, within MPMX19_03179at 475.870 kb on - strand, within MPMX19_03179at 475.870 kb on - strand, within MPMX19_03179at 475.870 kb on - strand, within MPMX19_03179at 475.870 kb on - strand, within MPMX19_03179at 475.953 kb on + strandat 475.953 kb on + strandat 475.954 kb on - strandat 475.997 kb on + strandat 475.998 kb on - strandat 476.012 kb on + strandat 476.012 kb on + strandat 476.013 kb on - strandat 476.013 kb on - strandat 476.013 kb on - strandat 476.031 kb on - strandat 476.031 kb on - strandat 476.176 kb on + strand, within MPMX19_03180at 476.176 kb on + strand, within MPMX19_03180at 476.176 kb on + strand, within MPMX19_03180at 476.176 kb on + strand, within MPMX19_03180at 476.177 kb on - strand, within MPMX19_03180at 476.177 kb on - strand, within MPMX19_03180at 476.177 kb on - strand, within MPMX19_03180at 476.180 kb on + strand, within MPMX19_03180at 476.180 kb on + strand, within MPMX19_03180at 476.180 kb on + strand, within MPMX19_03180at 476.180 kb on + strand, within MPMX19_03180at 476.181 kb on - strand, within MPMX19_03180at 476.181 kb on - strand, within MPMX19_03180at 476.213 kb on - strand, within MPMX19_03180at 476.281 kb on + strand, within MPMX19_03180at 476.281 kb on + strand, within MPMX19_03180at 476.281 kb on + strand, within MPMX19_03180at 476.281 kb on + strand, within MPMX19_03180at 476.281 kb on + strand, within MPMX19_03180at 476.282 kb on - strand, within MPMX19_03180at 476.282 kb on - strand, within MPMX19_03180at 476.282 kb on - strand, within MPMX19_03180at 476.282 kb on - strand, within MPMX19_03180at 476.282 kb on - strand, within MPMX19_03180at 476.282 kb on - strand, within MPMX19_03180at 476.584 kb on + strandat 476.585 kb on - strandat 476.585 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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475,038 + -1.0
475,038 + -0.6
475,038 + -1.1
475,038 + +1.2
475,039 - -1.3
475,039 - -1.3
475,039 - -1.3
475,039 - -1.4
475,164 + -0.1
475,164 + -0.9
475,164 + -0.5
475,164 + +0.5
475,164 + -1.6
475,164 + -0.8
475,164 + -0.5
475,164 + +0.6
475,164 + +0.0
475,165 - -1.1
475,165 - +0.1
475,165 - -1.0
475,165 - +0.9
475,165 - -0.9
475,165 - -0.9
475,165 - -1.1
475,165 - -1.8
475,297 + -1.4
475,297 + +0.6
475,297 + -0.0
475,298 - -0.2
475,298 - -0.4
475,613 + MPMX19_03179 0.41 +0.6
475,613 + MPMX19_03179 0.41 -0.1
475,613 + MPMX19_03179 0.41 -0.3
475,613 + MPMX19_03179 0.41 -0.6
475,613 + MPMX19_03179 0.41 -1.8
475,613 + MPMX19_03179 0.41 +0.1
475,613 + MPMX19_03179 0.41 +0.2
475,613 + MPMX19_03179 0.41 -0.4
475,614 - MPMX19_03179 0.41 -1.5
475,614 - MPMX19_03179 0.41 -0.8
475,614 - MPMX19_03179 0.41 -0.2
475,614 - MPMX19_03179 0.41 -1.2
475,614 - MPMX19_03179 0.41 -2.9
475,614 - MPMX19_03179 0.41 -0.6
475,614 - MPMX19_03179 0.41 -0.3
475,614 - MPMX19_03179 0.41 -0.6
475,614 - MPMX19_03179 0.41 +0.5
475,614 - MPMX19_03179 0.41 -0.7
475,614 - MPMX19_03179 0.41 -0.2
475,614 - MPMX19_03179 0.41 -1.1
475,743 + MPMX19_03179 0.61 -1.6
475,743 + MPMX19_03179 0.61 -1.3
475,743 + MPMX19_03179 0.61 -0.9
475,743 + MPMX19_03179 0.61 -0.6
475,743 + MPMX19_03179 0.61 +0.1
475,744 - MPMX19_03179 0.61 -1.8
475,744 - MPMX19_03179 0.61 -0.3
475,744 - MPMX19_03179 0.61 -0.5
475,744 - MPMX19_03179 0.61 +0.3
475,744 - MPMX19_03179 0.61 +0.4
475,754 + MPMX19_03179 0.62 -0.6
475,754 + MPMX19_03179 0.62 -0.9
475,755 - MPMX19_03179 0.62 +2.1
475,755 - MPMX19_03179 0.62 -0.9
475,755 - MPMX19_03179 0.62 +0.3
475,845 - MPMX19_03179 0.76 +1.0
475,845 - MPMX19_03179 0.76 -1.2
475,845 - MPMX19_03179 0.76 -1.5
475,850 + MPMX19_03179 0.76 -1.3
475,850 + MPMX19_03179 0.76 +0.7
475,851 - MPMX19_03179 0.77 -0.8
475,869 + MPMX19_03179 0.79 +0.1
475,869 + MPMX19_03179 0.79 +0.2
475,869 + MPMX19_03179 0.79 -1.3
475,869 + MPMX19_03179 0.79 +0.1
475,869 + MPMX19_03179 0.79 -0.7
475,869 + MPMX19_03179 0.79 -1.5
475,869 + MPMX19_03179 0.79 -0.3
475,869 + MPMX19_03179 0.79 -1.2
475,869 + MPMX19_03179 0.79 -0.6
475,869 + MPMX19_03179 0.79 -0.3
475,869 + MPMX19_03179 0.79 -2.5
475,870 - MPMX19_03179 0.79 -1.8
475,870 - MPMX19_03179 0.79 -1.0
475,870 - MPMX19_03179 0.79 -0.9
475,870 - MPMX19_03179 0.79 -1.3
475,870 - MPMX19_03179 0.79 -1.9
475,870 - MPMX19_03179 0.79 -1.1
475,953 + -0.1
475,953 + -1.1
475,954 - +1.7
475,997 + -0.1
475,998 - -2.9
476,012 + -0.7
476,012 + +0.2
476,013 - -1.6
476,013 - -1.4
476,013 - -3.2
476,031 - -0.4
476,031 - +0.5
476,176 + MPMX19_03180 0.54 +0.8
476,176 + MPMX19_03180 0.54 -0.5
476,176 + MPMX19_03180 0.54 -1.6
476,176 + MPMX19_03180 0.54 +1.1
476,177 - MPMX19_03180 0.54 -0.2
476,177 - MPMX19_03180 0.54 +0.1
476,177 - MPMX19_03180 0.54 -0.5
476,180 + MPMX19_03180 0.55 +0.3
476,180 + MPMX19_03180 0.55 -0.7
476,180 + MPMX19_03180 0.55 -0.9
476,180 + MPMX19_03180 0.55 +0.9
476,181 - MPMX19_03180 0.56 -0.9
476,181 - MPMX19_03180 0.56 +0.3
476,213 - MPMX19_03180 0.66 -0.3
476,281 + MPMX19_03180 0.87 -0.4
476,281 + MPMX19_03180 0.87 -0.6
476,281 + MPMX19_03180 0.87 -1.2
476,281 + MPMX19_03180 0.87 +0.3
476,281 + MPMX19_03180 0.87 +1.7
476,282 - MPMX19_03180 0.87 -0.1
476,282 - MPMX19_03180 0.87 -0.3
476,282 - MPMX19_03180 0.87 +0.3
476,282 - MPMX19_03180 0.87 -1.1
476,282 - MPMX19_03180 0.87 +0.7
476,282 - MPMX19_03180 0.87 -0.3
476,584 + -0.6
476,585 - -1.5
476,585 - -1.3

Or see this region's nucleotide sequence