Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03142 and MPMX19_03143 are separated by 425 nucleotides MPMX19_03143 and MPMX19_03144 are separated by 104 nucleotides MPMX19_03144 and MPMX19_03145 are separated by 44 nucleotides MPMX19_03145 and MPMX19_03146 overlap by 4 nucleotides
MPMX19_03142: MPMX19_03142 - Putative thiamine pyrophosphate-containing protein YdaP, at 430,964 to 432,766
_03142
MPMX19_03143: MPMX19_03143 - Polar-differentiation response regulator DivK, at 433,192 to 433,578
_03143
MPMX19_03144: MPMX19_03144 - UDP-N-acetylglucosamine 4-epimerase, at 433,683 to 434,624
_03144
MPMX19_03145: MPMX19_03145 - hypothetical protein, at 434,669 to 435,553
_03145
MPMX19_03146: MPMX19_03146 - hypothetical protein, at 435,550 to 437,832
_03146
Position (kb) 433
434
435 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.734 kb on + strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.735 kb on - strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.809 kb on + strand at 432.810 kb on - strand at 432.810 kb on - strand at 432.810 kb on - strand at 432.810 kb on - strand at 432.919 kb on - strand at 432.919 kb on - strand at 433.024 kb on - strand at 433.031 kb on + strand at 433.067 kb on + strand at 433.401 kb on + strand, within MPMX19_03143 at 433.617 kb on + strand at 433.617 kb on + strand at 433.642 kb on + strand at 433.642 kb on + strand at 433.643 kb on - strand at 433.643 kb on - strand at 433.692 kb on + strand at 433.692 kb on + strand at 433.692 kb on + strand at 433.693 kb on - strand at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.043 kb on + strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.044 kb on - strand, within MPMX19_03144 at 434.124 kb on + strand, within MPMX19_03144 at 434.124 kb on + strand, within MPMX19_03144 at 434.124 kb on + strand, within MPMX19_03144 at 434.124 kb on + strand, within MPMX19_03144 at 434.125 kb on - strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.217 kb on + strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.218 kb on - strand, within MPMX19_03144 at 434.247 kb on + strand, within MPMX19_03144 at 434.247 kb on + strand, within MPMX19_03144 at 434.248 kb on - strand, within MPMX19_03144 at 434.248 kb on - strand, within MPMX19_03144 at 434.248 kb on - strand, within MPMX19_03144 at 434.344 kb on + strand, within MPMX19_03144 at 434.344 kb on + strand, within MPMX19_03144 at 434.361 kb on + strand, within MPMX19_03144 at 434.362 kb on - strand, within MPMX19_03144 at 434.362 kb on - strand, within MPMX19_03144 at 434.362 kb on - strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.406 kb on + strand, within MPMX19_03144 at 434.407 kb on - strand, within MPMX19_03144 at 434.407 kb on - strand, within MPMX19_03144 at 434.407 kb on - strand, within MPMX19_03144 at 434.407 kb on - strand, within MPMX19_03144 at 434.801 kb on + strand, within MPMX19_03145 at 434.801 kb on + strand, within MPMX19_03145 at 434.801 kb on + strand, within MPMX19_03145 at 434.801 kb on + strand, within MPMX19_03145 at 434.801 kb on + strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.802 kb on - strand, within MPMX19_03145 at 434.804 kb on + strand, within MPMX19_03145 at 434.804 kb on + strand, within MPMX19_03145 at 434.804 kb on + strand, within MPMX19_03145 at 434.804 kb on + strand, within MPMX19_03145 at 434.805 kb on - strand, within MPMX19_03145 at 434.805 kb on - strand, within MPMX19_03145 at 434.805 kb on - strand, within MPMX19_03145 at 434.918 kb on + strand, within MPMX19_03145 at 434.918 kb on + strand, within MPMX19_03145 at 434.918 kb on + strand, within MPMX19_03145 at 434.919 kb on - strand, within MPMX19_03145 at 434.919 kb on - strand, within MPMX19_03145 at 434.919 kb on - strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.020 kb on + strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.021 kb on - strand, within MPMX19_03145 at 435.249 kb on - strand, within MPMX19_03145 at 435.249 kb on - strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.305 kb on + strand, within MPMX19_03145 at 435.306 kb on - strand, within MPMX19_03145 at 435.306 kb on - strand, within MPMX19_03145 at 435.306 kb on - strand, within MPMX19_03145 at 435.431 kb on + strand, within MPMX19_03145 at 435.431 kb on + strand, within MPMX19_03145 at 435.432 kb on - strand, within MPMX19_03145 at 435.432 kb on - strand, within MPMX19_03145 at 435.432 kb on - strand, within MPMX19_03145 at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.470 kb on + strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.471 kb on - strand at 435.503 kb on + strand at 435.503 kb on + strand at 435.503 kb on + strand at 435.503 kb on + strand at 435.504 kb on - strand at 435.504 kb on - strand at 435.504 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 432,734 + -0.7 432,734 + -1.8 432,734 + -0.1 432,734 + -1.7 432,734 + -1.1 432,734 + +1.3 432,734 + -0.1 432,734 + +0.7 432,734 + -1.8 432,734 + -0.2 432,734 + -0.3 432,735 - +0.7 432,735 - +1.0 432,735 - +1.0 432,735 - +0.2 432,735 - -0.1 432,735 - -1.3 432,735 - -0.1 432,735 - -0.8 432,735 - -0.8 432,735 - +0.7 432,809 + -1.0 432,809 + -1.3 432,809 + +0.7 432,809 + -2.2 432,809 + -0.7 432,809 + -0.4 432,809 + -1.6 432,809 + -2.6 432,809 + -1.3 432,809 + +0.0 432,810 - +0.2 432,810 - -0.8 432,810 - -1.3 432,810 - +0.7 432,919 - -0.3 432,919 - +0.6 433,024 - -0.3 433,031 + -0.3 433,067 + -0.2 433,401 + MPMX19_03143 0.54 -0.3 433,617 + -0.5 433,617 + -0.2 433,642 + -0.4 433,642 + +1.3 433,643 - -1.3 433,643 - -0.3 433,692 + -0.8 433,692 + +1.2 433,692 + -0.6 433,693 - -1.4 434,043 + MPMX19_03144 0.38 -0.6 434,043 + MPMX19_03144 0.38 -0.2 434,043 + MPMX19_03144 0.38 -0.5 434,043 + MPMX19_03144 0.38 +1.2 434,043 + MPMX19_03144 0.38 -0.3 434,043 + MPMX19_03144 0.38 -1.0 434,043 + MPMX19_03144 0.38 -0.8 434,043 + MPMX19_03144 0.38 +2.2 434,043 + MPMX19_03144 0.38 -0.8 434,043 + MPMX19_03144 0.38 -0.8 434,043 + MPMX19_03144 0.38 -0.6 434,043 + MPMX19_03144 0.38 +0.4 434,043 + MPMX19_03144 0.38 -0.1 434,043 + MPMX19_03144 0.38 -2.7 434,043 + MPMX19_03144 0.38 -0.6 434,043 + MPMX19_03144 0.38 -3.0 434,043 + MPMX19_03144 0.38 +0.6 434,043 + MPMX19_03144 0.38 -1.6 434,043 + MPMX19_03144 0.38 -1.4 434,043 + MPMX19_03144 0.38 -0.5 434,044 - MPMX19_03144 0.38 -1.3 434,044 - MPMX19_03144 0.38 +0.0 434,044 - MPMX19_03144 0.38 -1.6 434,044 - MPMX19_03144 0.38 -2.7 434,044 - MPMX19_03144 0.38 -0.1 434,044 - MPMX19_03144 0.38 +0.6 434,044 - MPMX19_03144 0.38 +0.9 434,044 - MPMX19_03144 0.38 +2.5 434,044 - MPMX19_03144 0.38 -1.0 434,044 - MPMX19_03144 0.38 +0.0 434,044 - MPMX19_03144 0.38 -1.3 434,044 - MPMX19_03144 0.38 -2.0 434,044 - MPMX19_03144 0.38 -0.8 434,044 - MPMX19_03144 0.38 -1.7 434,044 - MPMX19_03144 0.38 +0.0 434,044 - MPMX19_03144 0.38 +0.7 434,124 + MPMX19_03144 0.47 +3.1 434,124 + MPMX19_03144 0.47 -1.8 434,124 + MPMX19_03144 0.47 -0.5 434,124 + MPMX19_03144 0.47 +1.0 434,125 - MPMX19_03144 0.47 -1.8 434,217 + MPMX19_03144 0.57 -1.4 434,217 + MPMX19_03144 0.57 -1.8 434,217 + MPMX19_03144 0.57 -1.6 434,217 + MPMX19_03144 0.57 -0.1 434,217 + MPMX19_03144 0.57 -1.0 434,217 + MPMX19_03144 0.57 +0.1 434,217 + MPMX19_03144 0.57 -0.9 434,217 + MPMX19_03144 0.57 -0.7 434,217 + MPMX19_03144 0.57 -2.0 434,217 + MPMX19_03144 0.57 +1.1 434,218 - MPMX19_03144 0.57 +1.2 434,218 - MPMX19_03144 0.57 +0.8 434,218 - MPMX19_03144 0.57 -0.1 434,218 - MPMX19_03144 0.57 -0.0 434,218 - MPMX19_03144 0.57 +0.6 434,218 - MPMX19_03144 0.57 -1.1 434,218 - MPMX19_03144 0.57 -0.8 434,218 - MPMX19_03144 0.57 +0.4 434,218 - MPMX19_03144 0.57 +0.2 434,218 - MPMX19_03144 0.57 -0.8 434,247 + MPMX19_03144 0.60 -1.0 434,247 + MPMX19_03144 0.60 -0.4 434,248 - MPMX19_03144 0.60 +0.0 434,248 - MPMX19_03144 0.60 -0.8 434,248 - MPMX19_03144 0.60 -0.5 434,344 + MPMX19_03144 0.70 -0.1 434,344 + MPMX19_03144 0.70 -1.6 434,361 + MPMX19_03144 0.72 -1.4 434,362 - MPMX19_03144 0.72 +0.4 434,362 - MPMX19_03144 0.72 +0.2 434,362 - MPMX19_03144 0.72 -0.8 434,406 + MPMX19_03144 0.77 -1.3 434,406 + MPMX19_03144 0.77 +0.3 434,406 + MPMX19_03144 0.77 -0.3 434,406 + MPMX19_03144 0.77 -0.9 434,406 + MPMX19_03144 0.77 -0.1 434,406 + MPMX19_03144 0.77 +0.4 434,406 + MPMX19_03144 0.77 -0.3 434,406 + MPMX19_03144 0.77 -2.2 434,406 + MPMX19_03144 0.77 +0.0 434,406 + MPMX19_03144 0.77 -0.1 434,406 + MPMX19_03144 0.77 -0.6 434,406 + MPMX19_03144 0.77 -1.3 434,406 + MPMX19_03144 0.77 -0.6 434,406 + MPMX19_03144 0.77 +0.0 434,407 - MPMX19_03144 0.77 +0.0 434,407 - MPMX19_03144 0.77 +0.4 434,407 - MPMX19_03144 0.77 +0.7 434,407 - MPMX19_03144 0.77 +0.4 434,801 + MPMX19_03145 0.15 -0.8 434,801 + MPMX19_03145 0.15 +0.5 434,801 + MPMX19_03145 0.15 -1.1 434,801 + MPMX19_03145 0.15 -2.9 434,801 + MPMX19_03145 0.15 -1.8 434,802 - MPMX19_03145 0.15 -0.4 434,802 - MPMX19_03145 0.15 -0.4 434,802 - MPMX19_03145 0.15 -2.3 434,802 - MPMX19_03145 0.15 -0.2 434,802 - MPMX19_03145 0.15 -1.6 434,802 - MPMX19_03145 0.15 -0.3 434,804 + MPMX19_03145 0.15 +0.7 434,804 + MPMX19_03145 0.15 -0.7 434,804 + MPMX19_03145 0.15 -0.1 434,804 + MPMX19_03145 0.15 +0.7 434,805 - MPMX19_03145 0.15 -0.4 434,805 - MPMX19_03145 0.15 -1.1 434,805 - MPMX19_03145 0.15 -0.6 434,918 + MPMX19_03145 0.28 +1.7 434,918 + MPMX19_03145 0.28 -3.0 434,918 + MPMX19_03145 0.28 -2.2 434,919 - MPMX19_03145 0.28 +0.6 434,919 - MPMX19_03145 0.28 -1.7 434,919 - MPMX19_03145 0.28 +0.9 435,020 + MPMX19_03145 0.40 -1.8 435,020 + MPMX19_03145 0.40 -0.8 435,020 + MPMX19_03145 0.40 -1.3 435,020 + MPMX19_03145 0.40 -0.8 435,020 + MPMX19_03145 0.40 -1.8 435,020 + MPMX19_03145 0.40 +0.3 435,020 + MPMX19_03145 0.40 -1.3 435,020 + MPMX19_03145 0.40 -1.4 435,020 + MPMX19_03145 0.40 -1.7 435,020 + MPMX19_03145 0.40 -0.8 435,020 + MPMX19_03145 0.40 +0.3 435,020 + MPMX19_03145 0.40 -1.1 435,020 + MPMX19_03145 0.40 -0.3 435,020 + MPMX19_03145 0.40 -1.7 435,020 + MPMX19_03145 0.40 +0.7 435,020 + MPMX19_03145 0.40 -0.8 435,020 + MPMX19_03145 0.40 -0.7 435,020 + MPMX19_03145 0.40 +0.5 435,021 - MPMX19_03145 0.40 -1.2 435,021 - MPMX19_03145 0.40 -1.0 435,021 - MPMX19_03145 0.40 +0.3 435,021 - MPMX19_03145 0.40 -0.3 435,021 - MPMX19_03145 0.40 -0.1 435,021 - MPMX19_03145 0.40 -0.3 435,021 - MPMX19_03145 0.40 -1.6 435,021 - MPMX19_03145 0.40 -0.3 435,021 - MPMX19_03145 0.40 +0.9 435,021 - MPMX19_03145 0.40 -1.0 435,021 - MPMX19_03145 0.40 -0.1 435,021 - MPMX19_03145 0.40 -1.5 435,249 - MPMX19_03145 0.66 +0.7 435,249 - MPMX19_03145 0.66 -0.3 435,305 + MPMX19_03145 0.72 -0.1 435,305 + MPMX19_03145 0.72 -0.1 435,305 + MPMX19_03145 0.72 -0.7 435,305 + MPMX19_03145 0.72 -1.2 435,305 + MPMX19_03145 0.72 -2.2 435,305 + MPMX19_03145 0.72 -1.0 435,306 - MPMX19_03145 0.72 -0.6 435,306 - MPMX19_03145 0.72 +0.5 435,306 - MPMX19_03145 0.72 -0.8 435,431 + MPMX19_03145 0.86 -0.8 435,431 + MPMX19_03145 0.86 -0.4 435,432 - MPMX19_03145 0.86 -1.1 435,432 - MPMX19_03145 0.86 +0.2 435,432 - MPMX19_03145 0.86 -0.6 435,470 + -0.8 435,470 + -0.8 435,470 + -2.3 435,470 + +0.3 435,470 + -0.7 435,470 + -2.4 435,470 + -0.8 435,470 + -0.1 435,470 + -1.8 435,470 + -2.3 435,471 - +0.2 435,471 - -1.8 435,471 - +0.2 435,471 - -0.6 435,471 - +0.5 435,471 - -0.1 435,471 - -2.4 435,503 + -1.7 435,503 + -0.1 435,503 + -1.6 435,503 + -1.4 435,504 - -0.8 435,504 - +0.4 435,504 - -1.2
Or see this region's nucleotide sequence