Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03080

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03079 and MPMX19_03080 are separated by 57 nucleotidesMPMX19_03080 and MPMX19_03081 are separated by 147 nucleotides MPMX19_03079: MPMX19_03079 - hypothetical protein, at 346,312 to 347,457 _03079 MPMX19_03080: MPMX19_03080 - Ferrichrome receptor FcuA, at 347,515 to 349,992 _03080 MPMX19_03081: MPMX19_03081 - Protein FecR, at 350,140 to 351,195 _03081 Position (kb) 347 348 349 350Strain fitness (log2 ratio) -2 -1 0 1 2 3at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.517 kb on + strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.518 kb on - strand, within MPMX19_03079at 346.625 kb on + strand, within MPMX19_03079at 346.797 kb on - strand, within MPMX19_03079at 346.797 kb on - strand, within MPMX19_03079at 346.965 kb on - strand, within MPMX19_03079at 347.243 kb on + strand, within MPMX19_03079at 347.243 kb on + strand, within MPMX19_03079at 347.503 kb on + strandat 347.504 kb on - strandat 347.504 kb on - strandat 347.570 kb on + strandat 347.570 kb on + strandat 347.579 kb on + strandat 347.594 kb on + strandat 347.594 kb on + strandat 347.595 kb on - strandat 347.595 kb on - strandat 347.595 kb on - strandat 347.726 kb on + strandat 347.726 kb on + strandat 347.726 kb on + strandat 347.726 kb on + strandat 347.726 kb on + strandat 347.727 kb on - strandat 347.727 kb on - strandat 347.727 kb on - strandat 347.942 kb on + strand, within MPMX19_03080at 347.942 kb on + strand, within MPMX19_03080at 347.942 kb on + strand, within MPMX19_03080at 347.942 kb on + strand, within MPMX19_03080at 347.943 kb on - strand, within MPMX19_03080at 347.943 kb on - strand, within MPMX19_03080at 347.943 kb on - strand, within MPMX19_03080at 347.990 kb on + strand, within MPMX19_03080at 347.990 kb on + strand, within MPMX19_03080at 347.990 kb on + strand, within MPMX19_03080at 347.990 kb on + strand, within MPMX19_03080at 347.991 kb on + strand, within MPMX19_03080at 347.991 kb on - strand, within MPMX19_03080at 347.991 kb on - strand, within MPMX19_03080at 347.991 kb on - strand, within MPMX19_03080at 348.092 kb on + strand, within MPMX19_03080at 348.092 kb on + strand, within MPMX19_03080at 348.092 kb on + strand, within MPMX19_03080at 348.092 kb on + strand, within MPMX19_03080at 348.093 kb on - strand, within MPMX19_03080at 348.189 kb on - strand, within MPMX19_03080at 348.254 kb on + strand, within MPMX19_03080at 348.255 kb on - strand, within MPMX19_03080at 348.255 kb on - strand, within MPMX19_03080at 348.287 kb on + strand, within MPMX19_03080at 348.287 kb on + strand, within MPMX19_03080at 348.288 kb on - strand, within MPMX19_03080at 348.288 kb on - strand, within MPMX19_03080at 348.371 kb on + strand, within MPMX19_03080at 348.371 kb on + strand, within MPMX19_03080at 348.372 kb on - strand, within MPMX19_03080at 348.372 kb on - strand, within MPMX19_03080at 348.372 kb on - strand, within MPMX19_03080at 348.467 kb on + strand, within MPMX19_03080at 348.680 kb on + strand, within MPMX19_03080at 348.681 kb on - strand, within MPMX19_03080at 348.681 kb on - strand, within MPMX19_03080at 348.681 kb on - strand, within MPMX19_03080at 348.723 kb on - strand, within MPMX19_03080at 348.750 kb on - strand, within MPMX19_03080at 348.750 kb on - strand, within MPMX19_03080at 348.791 kb on + strand, within MPMX19_03080at 348.791 kb on + strand, within MPMX19_03080at 348.791 kb on + strand, within MPMX19_03080at 348.791 kb on + strand, within MPMX19_03080at 348.791 kb on + strand, within MPMX19_03080at 348.791 kb on + strand, within MPMX19_03080at 348.791 kb on + strand, within MPMX19_03080at 348.792 kb on - strand, within MPMX19_03080at 348.809 kb on + strand, within MPMX19_03080at 348.809 kb on + strand, within MPMX19_03080at 348.810 kb on - strand, within MPMX19_03080at 348.810 kb on - strand, within MPMX19_03080at 348.854 kb on + strand, within MPMX19_03080at 348.854 kb on + strand, within MPMX19_03080at 348.854 kb on + strand, within MPMX19_03080at 348.854 kb on + strand, within MPMX19_03080at 348.854 kb on + strand, within MPMX19_03080at 348.854 kb on + strand, within MPMX19_03080at 348.855 kb on - strand, within MPMX19_03080at 348.855 kb on - strand, within MPMX19_03080at 348.932 kb on + strand, within MPMX19_03080at 348.933 kb on - strand, within MPMX19_03080at 349.091 kb on + strand, within MPMX19_03080at 349.091 kb on + strand, within MPMX19_03080at 349.091 kb on + strand, within MPMX19_03080at 349.091 kb on + strand, within MPMX19_03080at 349.091 kb on + strand, within MPMX19_03080at 349.091 kb on + strand, within MPMX19_03080at 349.091 kb on + strand, within MPMX19_03080at 349.091 kb on + strand, within MPMX19_03080at 349.091 kb on + strand, within MPMX19_03080at 349.092 kb on - strand, within MPMX19_03080at 349.092 kb on - strand, within MPMX19_03080at 349.092 kb on - strand, within MPMX19_03080at 349.092 kb on - strand, within MPMX19_03080at 349.092 kb on - strand, within MPMX19_03080at 349.092 kb on - strand, within MPMX19_03080at 349.268 kb on + strand, within MPMX19_03080at 349.268 kb on + strand, within MPMX19_03080at 349.269 kb on - strand, within MPMX19_03080at 349.269 kb on - strand, within MPMX19_03080at 349.269 kb on - strand, within MPMX19_03080at 349.431 kb on - strand, within MPMX19_03080at 349.431 kb on - strand, within MPMX19_03080at 350.007 kb on - strandat 350.799 kb on - strand, within MPMX19_03081at 350.799 kb on - strand, within MPMX19_03081at 350.799 kb on - strand, within MPMX19_03081at 350.921 kb on + strand, within MPMX19_03081at 350.922 kb on - strand, within MPMX19_03081at 350.922 kb on - strand, within MPMX19_03081at 350.922 kb on - strand, within MPMX19_03081

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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346,517 + MPMX19_03079 0.18 +0.4
346,517 + MPMX19_03079 0.18 -0.3
346,517 + MPMX19_03079 0.18 -0.2
346,517 + MPMX19_03079 0.18 -0.7
346,517 + MPMX19_03079 0.18 -0.0
346,517 + MPMX19_03079 0.18 +0.5
346,517 + MPMX19_03079 0.18 +0.0
346,517 + MPMX19_03079 0.18 +0.4
346,517 + MPMX19_03079 0.18 -0.0
346,517 + MPMX19_03079 0.18 -1.8
346,518 - MPMX19_03079 0.18 -1.4
346,518 - MPMX19_03079 0.18 -1.0
346,518 - MPMX19_03079 0.18 -0.3
346,518 - MPMX19_03079 0.18 -2.1
346,518 - MPMX19_03079 0.18 -1.1
346,518 - MPMX19_03079 0.18 -1.2
346,518 - MPMX19_03079 0.18 -1.0
346,518 - MPMX19_03079 0.18 -1.2
346,625 + MPMX19_03079 0.27 -1.4
346,797 - MPMX19_03079 0.42 -1.0
346,797 - MPMX19_03079 0.42 -0.4
346,965 - MPMX19_03079 0.57 -1.0
347,243 + MPMX19_03079 0.81 +0.3
347,243 + MPMX19_03079 0.81 -0.9
347,503 + -0.9
347,504 - -2.1
347,504 - +0.4
347,570 + -1.8
347,570 + -0.5
347,579 + +0.1
347,594 + -0.3
347,594 + -1.9
347,595 - -0.0
347,595 - -1.1
347,595 - -0.7
347,726 + +0.8
347,726 + -0.6
347,726 + -0.8
347,726 + -0.2
347,726 + -0.8
347,727 - +0.1
347,727 - -0.1
347,727 - -0.8
347,942 + MPMX19_03080 0.17 -1.0
347,942 + MPMX19_03080 0.17 -0.5
347,942 + MPMX19_03080 0.17 -0.5
347,942 + MPMX19_03080 0.17 -0.6
347,943 - MPMX19_03080 0.17 +0.5
347,943 - MPMX19_03080 0.17 +0.4
347,943 - MPMX19_03080 0.17 -0.5
347,990 + MPMX19_03080 0.19 +1.4
347,990 + MPMX19_03080 0.19 -0.8
347,990 + MPMX19_03080 0.19 -1.1
347,990 + MPMX19_03080 0.19 +0.3
347,991 + MPMX19_03080 0.19 -0.1
347,991 - MPMX19_03080 0.19 +0.9
347,991 - MPMX19_03080 0.19 +0.3
347,991 - MPMX19_03080 0.19 -1.0
348,092 + MPMX19_03080 0.23 -1.1
348,092 + MPMX19_03080 0.23 +0.1
348,092 + MPMX19_03080 0.23 -1.6
348,092 + MPMX19_03080 0.23 +1.0
348,093 - MPMX19_03080 0.23 +1.2
348,189 - MPMX19_03080 0.27 -0.5
348,254 + MPMX19_03080 0.30 +3.1
348,255 - MPMX19_03080 0.30 +0.1
348,255 - MPMX19_03080 0.30 -1.2
348,287 + MPMX19_03080 0.31 -0.1
348,287 + MPMX19_03080 0.31 +0.2
348,288 - MPMX19_03080 0.31 +0.2
348,288 - MPMX19_03080 0.31 -0.1
348,371 + MPMX19_03080 0.35 -1.0
348,371 + MPMX19_03080 0.35 +0.2
348,372 - MPMX19_03080 0.35 -2.1
348,372 - MPMX19_03080 0.35 -1.3
348,372 - MPMX19_03080 0.35 -0.1
348,467 + MPMX19_03080 0.38 +0.6
348,680 + MPMX19_03080 0.47 +0.5
348,681 - MPMX19_03080 0.47 -0.7
348,681 - MPMX19_03080 0.47 +1.5
348,681 - MPMX19_03080 0.47 +1.0
348,723 - MPMX19_03080 0.49 -0.1
348,750 - MPMX19_03080 0.50 -1.5
348,750 - MPMX19_03080 0.50 -1.7
348,791 + MPMX19_03080 0.51 -0.2
348,791 + MPMX19_03080 0.51 -2.6
348,791 + MPMX19_03080 0.51 +0.6
348,791 + MPMX19_03080 0.51 -1.6
348,791 + MPMX19_03080 0.51 +0.4
348,791 + MPMX19_03080 0.51 -1.0
348,791 + MPMX19_03080 0.51 +2.2
348,792 - MPMX19_03080 0.52 -0.9
348,809 + MPMX19_03080 0.52 -1.3
348,809 + MPMX19_03080 0.52 -0.9
348,810 - MPMX19_03080 0.52 +0.3
348,810 - MPMX19_03080 0.52 +0.7
348,854 + MPMX19_03080 0.54 -1.4
348,854 + MPMX19_03080 0.54 -0.8
348,854 + MPMX19_03080 0.54 +1.8
348,854 + MPMX19_03080 0.54 +0.5
348,854 + MPMX19_03080 0.54 -0.0
348,854 + MPMX19_03080 0.54 +0.2
348,855 - MPMX19_03080 0.54 -0.3
348,855 - MPMX19_03080 0.54 -1.4
348,932 + MPMX19_03080 0.57 -1.0
348,933 - MPMX19_03080 0.57 +0.5
349,091 + MPMX19_03080 0.64 -0.6
349,091 + MPMX19_03080 0.64 -0.7
349,091 + MPMX19_03080 0.64 -1.0
349,091 + MPMX19_03080 0.64 -1.8
349,091 + MPMX19_03080 0.64 +1.4
349,091 + MPMX19_03080 0.64 +0.6
349,091 + MPMX19_03080 0.64 -0.3
349,091 + MPMX19_03080 0.64 +1.0
349,091 + MPMX19_03080 0.64 -0.1
349,092 - MPMX19_03080 0.64 -0.8
349,092 - MPMX19_03080 0.64 +0.2
349,092 - MPMX19_03080 0.64 -0.6
349,092 - MPMX19_03080 0.64 -0.6
349,092 - MPMX19_03080 0.64 +0.3
349,092 - MPMX19_03080 0.64 +1.1
349,268 + MPMX19_03080 0.71 -1.0
349,268 + MPMX19_03080 0.71 -0.6
349,269 - MPMX19_03080 0.71 +0.0
349,269 - MPMX19_03080 0.71 +0.2
349,269 - MPMX19_03080 0.71 +0.9
349,431 - MPMX19_03080 0.77 -0.3
349,431 - MPMX19_03080 0.77 -1.9
350,007 - -0.2
350,799 - MPMX19_03081 0.62 -0.4
350,799 - MPMX19_03081 0.62 -0.3
350,799 - MPMX19_03081 0.62 +1.0
350,921 + MPMX19_03081 0.74 -0.1
350,922 - MPMX19_03081 0.74 -0.2
350,922 - MPMX19_03081 0.74 -1.0
350,922 - MPMX19_03081 0.74 -1.3

Or see this region's nucleotide sequence