Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03076

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03075 and MPMX19_03076 overlap by 4 nucleotidesMPMX19_03076 and MPMX19_03077 are separated by 440 nucleotides MPMX19_03075: MPMX19_03075 - hypothetical protein, at 340,888 to 342,252 _03075 MPMX19_03076: MPMX19_03076 - hypothetical protein, at 342,249 to 343,586 _03076 MPMX19_03077: MPMX19_03077 - N-acetylglucosamine-6-O-sulfatase, at 344,027 to 346,069 _03077 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1 2 3at 341.333 kb on + strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.333 kb on + strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.334 kb on - strand, within MPMX19_03075at 341.388 kb on + strand, within MPMX19_03075at 341.389 kb on - strand, within MPMX19_03075at 341.873 kb on + strand, within MPMX19_03075at 341.873 kb on + strand, within MPMX19_03075at 341.873 kb on + strand, within MPMX19_03075at 341.873 kb on + strand, within MPMX19_03075at 341.874 kb on - strand, within MPMX19_03075at 341.874 kb on - strand, within MPMX19_03075at 342.494 kb on + strand, within MPMX19_03076at 342.494 kb on + strand, within MPMX19_03076at 342.495 kb on - strand, within MPMX19_03076at 342.495 kb on - strand, within MPMX19_03076at 342.625 kb on + strand, within MPMX19_03076at 342.625 kb on + strand, within MPMX19_03076at 342.625 kb on + strand, within MPMX19_03076at 342.626 kb on - strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.631 kb on + strand, within MPMX19_03076at 342.632 kb on - strand, within MPMX19_03076at 342.632 kb on - strand, within MPMX19_03076at 342.632 kb on - strand, within MPMX19_03076at 342.632 kb on - strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.688 kb on + strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 342.689 kb on - strand, within MPMX19_03076at 343.045 kb on + strand, within MPMX19_03076at 343.045 kb on + strand, within MPMX19_03076at 343.045 kb on + strand, within MPMX19_03076at 343.046 kb on - strand, within MPMX19_03076at 343.339 kb on + strand, within MPMX19_03076at 343.454 kb on - strandat 343.625 kb on - strandat 343.636 kb on + strandat 343.637 kb on - strandat 343.637 kb on - strandat 343.637 kb on - strandat 343.638 kb on + strandat 343.639 kb on - strandat 343.639 kb on - strandat 343.639 kb on - strandat 343.836 kb on + strandat 343.884 kb on + strandat 343.884 kb on + strandat 343.916 kb on + strandat 344.099 kb on + strandat 344.100 kb on - strandat 344.100 kb on - strandat 344.120 kb on + strandat 344.121 kb on - strandat 344.201 kb on + strandat 344.202 kb on - strandat 344.202 kb on - strandat 344.202 kb on - strandat 344.442 kb on - strand, within MPMX19_03077at 344.453 kb on + strand, within MPMX19_03077at 344.531 kb on + strand, within MPMX19_03077at 344.532 kb on - strand, within MPMX19_03077at 344.532 kb on - strand, within MPMX19_03077

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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341,333 + MPMX19_03075 0.33 -0.0
341,333 + MPMX19_03075 0.33 -0.0
341,333 + MPMX19_03075 0.33 +0.0
341,333 + MPMX19_03075 0.33 +0.5
341,334 - MPMX19_03075 0.33 +0.8
341,334 - MPMX19_03075 0.33 +0.4
341,334 - MPMX19_03075 0.33 -0.3
341,334 - MPMX19_03075 0.33 -0.4
341,388 + MPMX19_03075 0.37 -1.0
341,389 - MPMX19_03075 0.37 +0.5
341,873 + MPMX19_03075 0.72 -0.2
341,873 + MPMX19_03075 0.72 -0.4
341,873 + MPMX19_03075 0.72 -1.0
341,873 + MPMX19_03075 0.72 -1.4
341,874 - MPMX19_03075 0.72 -0.7
341,874 - MPMX19_03075 0.72 +1.2
342,494 + MPMX19_03076 0.18 -0.3
342,494 + MPMX19_03076 0.18 +0.0
342,495 - MPMX19_03076 0.18 +3.2
342,495 - MPMX19_03076 0.18 -0.8
342,625 + MPMX19_03076 0.28 -1.7
342,625 + MPMX19_03076 0.28 +0.8
342,625 + MPMX19_03076 0.28 -0.3
342,626 - MPMX19_03076 0.28 -0.2
342,631 + MPMX19_03076 0.29 -1.6
342,631 + MPMX19_03076 0.29 -1.2
342,631 + MPMX19_03076 0.29 -1.0
342,631 + MPMX19_03076 0.29 +0.4
342,631 + MPMX19_03076 0.29 -0.6
342,632 - MPMX19_03076 0.29 -0.2
342,632 - MPMX19_03076 0.29 -1.0
342,632 - MPMX19_03076 0.29 -1.8
342,632 - MPMX19_03076 0.29 -0.9
342,688 + MPMX19_03076 0.33 +0.8
342,688 + MPMX19_03076 0.33 +0.8
342,688 + MPMX19_03076 0.33 -1.0
342,688 + MPMX19_03076 0.33 +0.0
342,688 + MPMX19_03076 0.33 -0.7
342,688 + MPMX19_03076 0.33 +0.6
342,689 - MPMX19_03076 0.33 -0.4
342,689 - MPMX19_03076 0.33 +0.4
342,689 - MPMX19_03076 0.33 +0.2
342,689 - MPMX19_03076 0.33 -0.3
342,689 - MPMX19_03076 0.33 -0.9
343,045 + MPMX19_03076 0.59 +1.2
343,045 + MPMX19_03076 0.59 -0.0
343,045 + MPMX19_03076 0.59 -0.9
343,046 - MPMX19_03076 0.60 +0.4
343,339 + MPMX19_03076 0.81 +0.1
343,454 - -1.8
343,625 - -2.0
343,636 + +1.3
343,637 - +0.5
343,637 - -1.8
343,637 - +0.7
343,638 + +0.5
343,639 - -1.0
343,639 - +0.2
343,639 - -0.7
343,836 + -0.5
343,884 + -0.6
343,884 + -0.1
343,916 + -0.1
344,099 + +0.6
344,100 - +0.6
344,100 - -0.8
344,120 + +0.1
344,121 - +0.3
344,201 + -1.3
344,202 - -0.4
344,202 - -0.0
344,202 - -0.8
344,442 - MPMX19_03077 0.20 +0.3
344,453 + MPMX19_03077 0.21 -1.2
344,531 + MPMX19_03077 0.25 +0.1
344,532 - MPMX19_03077 0.25 -1.8
344,532 - MPMX19_03077 0.25 +1.0

Or see this region's nucleotide sequence