Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03068

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03067 and MPMX19_03068 overlap by 4 nucleotidesMPMX19_03068 and MPMX19_03069 are separated by 2 nucleotidesMPMX19_03069 and MPMX19_03070 are separated by 114 nucleotides MPMX19_03067: MPMX19_03067 - hypothetical protein, at 332,043 to 333,314 _03067 MPMX19_03068: MPMX19_03068 - hypothetical protein, at 333,311 to 334,153 _03068 MPMX19_03069: MPMX19_03069 - hypothetical protein, at 334,156 to 334,749 _03069 MPMX19_03070: MPMX19_03070 - Inner membrane protein YdcO, at 334,864 to 336,096 _03070 Position (kb) 333 334 335Strain fitness (log2 ratio) -2 -1 0 1at 332.372 kb on + strand, within MPMX19_03067at 332.466 kb on + strand, within MPMX19_03067at 332.466 kb on + strand, within MPMX19_03067at 332.466 kb on + strand, within MPMX19_03067at 332.467 kb on - strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.018 kb on + strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.019 kb on - strand, within MPMX19_03067at 333.316 kb on - strandat 333.316 kb on - strandat 333.316 kb on - strandat 333.419 kb on + strand, within MPMX19_03068at 333.419 kb on + strand, within MPMX19_03068at 333.420 kb on - strand, within MPMX19_03068at 333.420 kb on - strand, within MPMX19_03068at 333.467 kb on + strand, within MPMX19_03068at 333.467 kb on + strand, within MPMX19_03068at 333.467 kb on + strand, within MPMX19_03068at 333.468 kb on - strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.761 kb on + strand, within MPMX19_03068at 333.762 kb on - strand, within MPMX19_03068at 333.762 kb on - strand, within MPMX19_03068at 333.762 kb on - strand, within MPMX19_03068at 333.929 kb on + strand, within MPMX19_03068at 333.929 kb on + strand, within MPMX19_03068at 333.929 kb on + strand, within MPMX19_03068at 333.930 kb on - strand, within MPMX19_03068at 333.998 kb on + strand, within MPMX19_03068at 333.998 kb on + strand, within MPMX19_03068at 333.999 kb on - strand, within MPMX19_03068at 334.016 kb on + strand, within MPMX19_03068at 334.017 kb on - strand, within MPMX19_03068at 334.017 kb on - strand, within MPMX19_03068at 334.017 kb on - strand, within MPMX19_03068at 334.249 kb on + strand, within MPMX19_03069at 334.249 kb on + strand, within MPMX19_03069at 334.249 kb on + strand, within MPMX19_03069at 334.249 kb on + strand, within MPMX19_03069at 334.250 kb on - strand, within MPMX19_03069at 334.747 kb on + strandat 334.748 kb on - strandat 334.748 kb on - strandat 334.937 kb on + strandat 334.937 kb on + strandat 334.938 kb on - strandat 334.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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332,372 + MPMX19_03067 0.26 +1.5
332,466 + MPMX19_03067 0.33 -0.2
332,466 + MPMX19_03067 0.33 +0.8
332,466 + MPMX19_03067 0.33 +0.1
332,467 - MPMX19_03067 0.33 +0.2
333,018 + MPMX19_03067 0.77 -0.2
333,018 + MPMX19_03067 0.77 -0.7
333,018 + MPMX19_03067 0.77 +0.5
333,018 + MPMX19_03067 0.77 +0.0
333,018 + MPMX19_03067 0.77 +0.0
333,018 + MPMX19_03067 0.77 -0.5
333,019 - MPMX19_03067 0.77 -1.1
333,019 - MPMX19_03067 0.77 -2.6
333,019 - MPMX19_03067 0.77 -0.1
333,019 - MPMX19_03067 0.77 -0.5
333,019 - MPMX19_03067 0.77 -1.5
333,019 - MPMX19_03067 0.77 +0.3
333,019 - MPMX19_03067 0.77 -0.4
333,316 - -0.5
333,316 - -1.9
333,316 - -2.0
333,419 + MPMX19_03068 0.13 +0.7
333,419 + MPMX19_03068 0.13 -0.0
333,420 - MPMX19_03068 0.13 -0.8
333,420 - MPMX19_03068 0.13 -0.2
333,467 + MPMX19_03068 0.19 -0.3
333,467 + MPMX19_03068 0.19 -0.4
333,467 + MPMX19_03068 0.19 -0.1
333,468 - MPMX19_03068 0.19 -0.4
333,761 + MPMX19_03068 0.53 -0.4
333,761 + MPMX19_03068 0.53 -0.7
333,761 + MPMX19_03068 0.53 +0.2
333,761 + MPMX19_03068 0.53 +0.4
333,761 + MPMX19_03068 0.53 -0.1
333,761 + MPMX19_03068 0.53 -0.4
333,761 + MPMX19_03068 0.53 -1.0
333,762 - MPMX19_03068 0.53 -0.5
333,762 - MPMX19_03068 0.53 -0.3
333,762 - MPMX19_03068 0.53 -0.9
333,929 + MPMX19_03068 0.73 -1.4
333,929 + MPMX19_03068 0.73 -0.7
333,929 + MPMX19_03068 0.73 +0.4
333,930 - MPMX19_03068 0.73 -1.0
333,998 + MPMX19_03068 0.81 -0.7
333,998 + MPMX19_03068 0.81 -0.6
333,999 - MPMX19_03068 0.82 -0.1
334,016 + MPMX19_03068 0.84 -2.4
334,017 - MPMX19_03068 0.84 +0.9
334,017 - MPMX19_03068 0.84 +0.2
334,017 - MPMX19_03068 0.84 -1.4
334,249 + MPMX19_03069 0.16 -1.6
334,249 + MPMX19_03069 0.16 +0.8
334,249 + MPMX19_03069 0.16 +0.1
334,249 + MPMX19_03069 0.16 -0.7
334,250 - MPMX19_03069 0.16 -0.1
334,747 + -0.8
334,748 - +0.3
334,748 - -0.2
334,937 + -1.8
334,937 + -0.0
334,938 - -0.8
334,938 - -0.0

Or see this region's nucleotide sequence