Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03028 and MPMX19_03029 are separated by 258 nucleotides MPMX19_03029 and MPMX19_03030 overlap by 4 nucleotides
MPMX19_03028: MPMX19_03028 - D-xylose-binding periplasmic protein, at 293,702 to 294,760
_03028
MPMX19_03029: MPMX19_03029 - Xylose isomerase, at 295,019 to 296,341
_03029
MPMX19_03030: MPMX19_03030 - Xylulose kinase, at 296,338 to 297,789
_03030
Position (kb) 295
296
297 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 294.183 kb on + strand, within MPMX19_03028 at 294.183 kb on + strand, within MPMX19_03028 at 294.183 kb on + strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.184 kb on - strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.300 kb on + strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.301 kb on - strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.375 kb on + strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.376 kb on - strand, within MPMX19_03028 at 294.408 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.570 kb on + strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.571 kb on - strand, within MPMX19_03028 at 294.697 kb on + strand at 294.697 kb on + strand at 294.697 kb on + strand at 294.697 kb on + strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.698 kb on - strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.774 kb on + strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.775 kb on - strand at 294.977 kb on + strand at 294.977 kb on + strand at 294.978 kb on - strand at 295.005 kb on + strand at 295.005 kb on + strand at 295.005 kb on + strand at 295.005 kb on + strand at 295.027 kb on - strand at 295.050 kb on + strand at 295.050 kb on + strand at 295.050 kb on + strand at 295.050 kb on + strand at 295.051 kb on - strand at 295.174 kb on - strand, within MPMX19_03029 at 295.563 kb on + strand, within MPMX19_03029 at 295.563 kb on + strand, within MPMX19_03029 at 295.564 kb on - strand, within MPMX19_03029 at 295.564 kb on - strand, within MPMX19_03029 at 295.564 kb on - strand, within MPMX19_03029 at 295.581 kb on + strand, within MPMX19_03029 at 295.582 kb on - strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.605 kb on + strand, within MPMX19_03029 at 295.606 kb on - strand, within MPMX19_03029 at 295.606 kb on - strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.752 kb on + strand, within MPMX19_03029 at 295.753 kb on - strand, within MPMX19_03029 at 295.753 kb on - strand, within MPMX19_03029 at 295.753 kb on - strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.779 kb on + strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.780 kb on - strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.839 kb on + strand, within MPMX19_03029 at 295.840 kb on - strand, within MPMX19_03029 at 295.840 kb on - strand, within MPMX19_03029 at 295.840 kb on - strand, within MPMX19_03029 at 295.840 kb on - strand, within MPMX19_03029 at 295.884 kb on + strand, within MPMX19_03029 at 295.884 kb on + strand, within MPMX19_03029 at 295.884 kb on + strand, within MPMX19_03029 at 295.884 kb on + strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 295.885 kb on - strand, within MPMX19_03029 at 296.193 kb on + strand, within MPMX19_03029 at 296.194 kb on - strand, within MPMX19_03029 at 296.194 kb on - strand, within MPMX19_03029 at 296.256 kb on + strand at 296.257 kb on - strand at 296.257 kb on - strand at 296.265 kb on + strand at 296.266 kb on - strand at 296.266 kb on - strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.366 kb on + strand at 296.367 kb on - strand at 296.367 kb on - strand at 296.367 kb on - strand at 296.399 kb on + strand at 296.399 kb on + strand at 296.399 kb on + strand at 296.399 kb on + strand at 296.399 kb on + strand at 296.400 kb on - strand at 296.400 kb on - strand at 296.400 kb on - strand at 296.789 kb on + strand, within MPMX19_03030 at 296.789 kb on + strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 296.790 kb on - strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.320 kb on + strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030 at 297.321 kb on - strand, within MPMX19_03030
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 294,183 + MPMX19_03028 0.45 -0.5 294,183 + MPMX19_03028 0.45 +0.2 294,183 + MPMX19_03028 0.45 -0.1 294,184 - MPMX19_03028 0.46 -2.7 294,184 - MPMX19_03028 0.46 -0.5 294,184 - MPMX19_03028 0.46 -1.4 294,184 - MPMX19_03028 0.46 +0.4 294,300 + MPMX19_03028 0.56 -0.6 294,300 + MPMX19_03028 0.56 +0.8 294,300 + MPMX19_03028 0.56 -1.2 294,300 + MPMX19_03028 0.56 -0.0 294,300 + MPMX19_03028 0.56 +0.4 294,300 + MPMX19_03028 0.56 -0.8 294,300 + MPMX19_03028 0.56 -0.4 294,301 - MPMX19_03028 0.57 -0.5 294,301 - MPMX19_03028 0.57 -0.4 294,301 - MPMX19_03028 0.57 +0.8 294,301 - MPMX19_03028 0.57 +0.9 294,301 - MPMX19_03028 0.57 -1.0 294,301 - MPMX19_03028 0.57 -1.9 294,301 - MPMX19_03028 0.57 -1.0 294,301 - MPMX19_03028 0.57 -0.7 294,301 - MPMX19_03028 0.57 -1.1 294,301 - MPMX19_03028 0.57 +0.5 294,375 + MPMX19_03028 0.64 -1.7 294,375 + MPMX19_03028 0.64 -0.6 294,375 + MPMX19_03028 0.64 -0.1 294,375 + MPMX19_03028 0.64 -0.4 294,375 + MPMX19_03028 0.64 -1.4 294,375 + MPMX19_03028 0.64 -0.8 294,375 + MPMX19_03028 0.64 -0.8 294,376 - MPMX19_03028 0.64 -0.2 294,376 - MPMX19_03028 0.64 +0.8 294,376 - MPMX19_03028 0.64 +1.8 294,376 - MPMX19_03028 0.64 -1.3 294,376 - MPMX19_03028 0.64 -1.8 294,376 - MPMX19_03028 0.64 +0.9 294,376 - MPMX19_03028 0.64 -0.0 294,376 - MPMX19_03028 0.64 -2.2 294,376 - MPMX19_03028 0.64 -0.7 294,376 - MPMX19_03028 0.64 -0.3 294,408 + MPMX19_03028 0.67 +0.9 294,570 + MPMX19_03028 0.82 -1.4 294,570 + MPMX19_03028 0.82 -0.2 294,570 + MPMX19_03028 0.82 -1.1 294,570 + MPMX19_03028 0.82 +0.1 294,570 + MPMX19_03028 0.82 -1.0 294,570 + MPMX19_03028 0.82 +0.3 294,570 + MPMX19_03028 0.82 +0.2 294,570 + MPMX19_03028 0.82 -0.8 294,570 + MPMX19_03028 0.82 -1.4 294,570 + MPMX19_03028 0.82 -0.7 294,570 + MPMX19_03028 0.82 -0.2 294,570 + MPMX19_03028 0.82 -0.9 294,570 + MPMX19_03028 0.82 +0.4 294,570 + MPMX19_03028 0.82 -0.9 294,570 + MPMX19_03028 0.82 -1.6 294,570 + MPMX19_03028 0.82 -0.6 294,571 - MPMX19_03028 0.82 +0.3 294,571 - MPMX19_03028 0.82 -0.2 294,571 - MPMX19_03028 0.82 -0.8 294,571 - MPMX19_03028 0.82 +1.4 294,571 - MPMX19_03028 0.82 -2.1 294,571 - MPMX19_03028 0.82 -0.6 294,571 - MPMX19_03028 0.82 +1.5 294,571 - MPMX19_03028 0.82 -0.2 294,571 - MPMX19_03028 0.82 -1.2 294,697 + +1.1 294,697 + -0.7 294,697 + -2.6 294,697 + -1.0 294,698 - -0.3 294,698 - -1.2 294,698 - -0.2 294,698 - -0.6 294,698 - -1.2 294,698 - +0.8 294,774 + -1.2 294,774 + -0.1 294,774 + -0.7 294,774 + +0.0 294,774 + -1.0 294,775 - -0.7 294,775 - -0.2 294,775 - -1.2 294,775 - +2.0 294,775 - +0.0 294,775 - -0.5 294,775 - +0.4 294,775 - -2.1 294,775 - +0.6 294,775 - -0.8 294,775 - +1.4 294,775 - -0.5 294,775 - -0.5 294,775 - -2.0 294,977 + +0.2 294,977 + +0.1 294,978 - -0.2 295,005 + +0.2 295,005 + -0.6 295,005 + -0.6 295,005 + -1.0 295,027 - +0.6 295,050 + -0.8 295,050 + -0.4 295,050 + -3.0 295,050 + -0.0 295,051 - -1.2 295,174 - MPMX19_03029 0.12 -0.8 295,563 + MPMX19_03029 0.41 -0.1 295,563 + MPMX19_03029 0.41 +0.4 295,564 - MPMX19_03029 0.41 -1.5 295,564 - MPMX19_03029 0.41 +0.3 295,564 - MPMX19_03029 0.41 +0.4 295,581 + MPMX19_03029 0.42 -0.9 295,582 - MPMX19_03029 0.43 +0.0 295,605 + MPMX19_03029 0.44 +0.6 295,605 + MPMX19_03029 0.44 -1.1 295,605 + MPMX19_03029 0.44 -1.2 295,605 + MPMX19_03029 0.44 +0.6 295,606 - MPMX19_03029 0.44 +0.0 295,606 - MPMX19_03029 0.44 -2.1 295,752 + MPMX19_03029 0.55 -1.9 295,752 + MPMX19_03029 0.55 +0.8 295,752 + MPMX19_03029 0.55 +0.6 295,752 + MPMX19_03029 0.55 +0.2 295,753 - MPMX19_03029 0.55 -1.2 295,753 - MPMX19_03029 0.55 -1.9 295,753 - MPMX19_03029 0.55 -0.8 295,779 + MPMX19_03029 0.57 -0.1 295,779 + MPMX19_03029 0.57 +0.3 295,779 + MPMX19_03029 0.57 +0.2 295,779 + MPMX19_03029 0.57 -1.2 295,779 + MPMX19_03029 0.57 -1.6 295,779 + MPMX19_03029 0.57 -0.8 295,779 + MPMX19_03029 0.57 -0.8 295,779 + MPMX19_03029 0.57 +0.1 295,779 + MPMX19_03029 0.57 -0.8 295,779 + MPMX19_03029 0.57 -0.5 295,779 + MPMX19_03029 0.57 -2.9 295,779 + MPMX19_03029 0.57 -0.4 295,780 - MPMX19_03029 0.58 -1.2 295,780 - MPMX19_03029 0.58 +0.4 295,780 - MPMX19_03029 0.58 -0.8 295,780 - MPMX19_03029 0.58 -0.2 295,780 - MPMX19_03029 0.58 +0.7 295,780 - MPMX19_03029 0.58 -1.2 295,780 - MPMX19_03029 0.58 +0.4 295,780 - MPMX19_03029 0.58 +0.3 295,780 - MPMX19_03029 0.58 -0.2 295,780 - MPMX19_03029 0.58 -1.0 295,780 - MPMX19_03029 0.58 -1.6 295,780 - MPMX19_03029 0.58 +0.1 295,839 + MPMX19_03029 0.62 -1.6 295,839 + MPMX19_03029 0.62 +1.3 295,839 + MPMX19_03029 0.62 -0.8 295,839 + MPMX19_03029 0.62 +0.1 295,839 + MPMX19_03029 0.62 -0.6 295,840 - MPMX19_03029 0.62 -1.8 295,840 - MPMX19_03029 0.62 -0.1 295,840 - MPMX19_03029 0.62 +0.6 295,840 - MPMX19_03029 0.62 -1.9 295,884 + MPMX19_03029 0.65 +2.8 295,884 + MPMX19_03029 0.65 +0.8 295,884 + MPMX19_03029 0.65 +0.2 295,884 + MPMX19_03029 0.65 +0.0 295,885 - MPMX19_03029 0.65 -0.7 295,885 - MPMX19_03029 0.65 -0.2 295,885 - MPMX19_03029 0.65 -0.7 295,885 - MPMX19_03029 0.65 -0.0 295,885 - MPMX19_03029 0.65 -1.3 296,193 + MPMX19_03029 0.89 -1.2 296,194 - MPMX19_03029 0.89 -1.6 296,194 - MPMX19_03029 0.89 -0.2 296,256 + -1.0 296,257 - +1.4 296,257 - -1.8 296,265 + -0.1 296,266 - -1.0 296,266 - -0.6 296,366 + -0.8 296,366 + -0.8 296,366 + -1.0 296,366 + -0.2 296,366 + +1.3 296,366 + +0.3 296,367 - -0.2 296,367 - -1.3 296,367 - -1.2 296,399 + +0.4 296,399 + +0.2 296,399 + +0.2 296,399 + +0.1 296,399 + -0.1 296,400 - +0.8 296,400 - -0.8 296,400 - -1.6 296,789 + MPMX19_03030 0.31 +0.3 296,789 + MPMX19_03030 0.31 -1.3 296,790 - MPMX19_03030 0.31 -1.9 296,790 - MPMX19_03030 0.31 -0.7 296,790 - MPMX19_03030 0.31 +0.5 296,790 - MPMX19_03030 0.31 +0.8 296,790 - MPMX19_03030 0.31 -0.8 296,790 - MPMX19_03030 0.31 -0.1 297,320 + MPMX19_03030 0.68 -1.7 297,320 + MPMX19_03030 0.68 +1.0 297,320 + MPMX19_03030 0.68 +0.4 297,320 + MPMX19_03030 0.68 -0.1 297,320 + MPMX19_03030 0.68 -0.1 297,320 + MPMX19_03030 0.68 -0.9 297,320 + MPMX19_03030 0.68 +1.8 297,320 + MPMX19_03030 0.68 -0.4 297,320 + MPMX19_03030 0.68 -0.2 297,321 - MPMX19_03030 0.68 -0.2 297,321 - MPMX19_03030 0.68 -0.5 297,321 - MPMX19_03030 0.68 -1.3 297,321 - MPMX19_03030 0.68 -0.9 297,321 - MPMX19_03030 0.68 -0.2 297,321 - MPMX19_03030 0.68 -0.3 297,321 - MPMX19_03030 0.68 -1.4 297,321 - MPMX19_03030 0.68 +0.9
Or see this region's nucleotide sequence