Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02981

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02979 and MPMX19_02980 overlap by 4 nucleotidesMPMX19_02980 and MPMX19_02981 overlap by 20 nucleotidesMPMX19_02981 and MPMX19_02982 are separated by 456 nucleotides MPMX19_02979: MPMX19_02979 - Hydrogen cyanide synthase subunit HcnB, at 240,940 to 242,397 _02979 MPMX19_02980: MPMX19_02980 - Hydrogen cyanide synthase subunit HcnA, at 242,394 to 242,696 _02980 MPMX19_02981: MPMX19_02981 - Hydrogen cyanide synthase subunit HcnC, at 242,677 to 243,810 _02981 MPMX19_02982: MPMX19_02982 - Octopine catabolism/uptake operon regulatory protein OccR, at 244,267 to 245,220 _02982 Position (kb) 242 243 244Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 241.856 kb on + strand, within MPMX19_02979at 241.856 kb on + strand, within MPMX19_02979at 241.856 kb on + strand, within MPMX19_02979at 241.856 kb on + strand, within MPMX19_02979at 241.856 kb on + strand, within MPMX19_02979at 241.857 kb on - strand, within MPMX19_02979at 241.857 kb on - strand, within MPMX19_02979at 242.259 kb on - strandat 242.259 kb on - strandat 242.375 kb on - strandat 242.506 kb on + strand, within MPMX19_02980at 242.507 kb on - strand, within MPMX19_02980at 242.507 kb on - strand, within MPMX19_02980at 242.528 kb on - strand, within MPMX19_02980at 242.846 kb on + strand, within MPMX19_02981at 242.846 kb on + strand, within MPMX19_02981at 242.847 kb on - strand, within MPMX19_02981at 243.044 kb on + strand, within MPMX19_02981at 243.044 kb on + strand, within MPMX19_02981at 243.045 kb on - strand, within MPMX19_02981at 243.045 kb on - strand, within MPMX19_02981at 243.045 kb on - strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.347 kb on + strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.348 kb on - strand, within MPMX19_02981at 243.420 kb on - strand, within MPMX19_02981at 243.611 kb on + strand, within MPMX19_02981at 243.612 kb on - strand, within MPMX19_02981at 243.783 kb on - strandat 243.783 kb on - strandat 243.783 kb on - strandat 243.783 kb on - strandat 243.880 kb on + strandat 243.881 kb on - strandat 243.881 kb on - strandat 243.885 kb on + strandat 243.885 kb on + strandat 243.885 kb on + strandat 243.886 kb on - strandat 243.933 kb on + strandat 243.947 kb on - strandat 243.947 kb on - strandat 243.947 kb on - strandat 243.948 kb on + strandat 243.981 kb on - strandat 243.981 kb on - strandat 243.981 kb on - strandat 243.981 kb on - strandat 243.992 kb on + strandat 243.992 kb on + strandat 243.992 kb on + strandat 243.993 kb on - strandat 244.104 kb on - strandat 244.390 kb on + strand, within MPMX19_02982at 244.390 kb on + strand, within MPMX19_02982at 244.390 kb on + strand, within MPMX19_02982at 244.390 kb on + strand, within MPMX19_02982at 244.391 kb on - strand, within MPMX19_02982at 244.391 kb on - strand, within MPMX19_02982at 244.391 kb on - strand, within MPMX19_02982at 244.462 kb on + strand, within MPMX19_02982at 244.462 kb on + strand, within MPMX19_02982at 244.462 kb on + strand, within MPMX19_02982at 244.462 kb on + strand, within MPMX19_02982at 244.463 kb on - strand, within MPMX19_02982at 244.463 kb on - strand, within MPMX19_02982at 244.463 kb on - strand, within MPMX19_02982at 244.594 kb on + strand, within MPMX19_02982

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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241,856 + MPMX19_02979 0.63 -0.6
241,856 + MPMX19_02979 0.63 -1.2
241,856 + MPMX19_02979 0.63 +0.8
241,856 + MPMX19_02979 0.63 +0.2
241,856 + MPMX19_02979 0.63 -1.6
241,857 - MPMX19_02979 0.63 +0.8
241,857 - MPMX19_02979 0.63 -1.4
242,259 - -0.4
242,259 - -2.0
242,375 - -0.6
242,506 + MPMX19_02980 0.37 -2.1
242,507 - MPMX19_02980 0.37 -0.6
242,507 - MPMX19_02980 0.37 +0.8
242,528 - MPMX19_02980 0.44 -0.1
242,846 + MPMX19_02981 0.15 -0.5
242,846 + MPMX19_02981 0.15 -0.2
242,847 - MPMX19_02981 0.15 -1.6
243,044 + MPMX19_02981 0.32 -1.9
243,044 + MPMX19_02981 0.32 -1.2
243,045 - MPMX19_02981 0.32 +0.3
243,045 - MPMX19_02981 0.32 -2.4
243,045 - MPMX19_02981 0.32 -1.6
243,347 + MPMX19_02981 0.59 -2.0
243,347 + MPMX19_02981 0.59 -1.8
243,347 + MPMX19_02981 0.59 -0.6
243,347 + MPMX19_02981 0.59 -0.8
243,347 + MPMX19_02981 0.59 -2.0
243,347 + MPMX19_02981 0.59 -0.6
243,347 + MPMX19_02981 0.59 -2.6
243,347 + MPMX19_02981 0.59 -2.1
243,348 - MPMX19_02981 0.59 -1.5
243,348 - MPMX19_02981 0.59 -2.4
243,348 - MPMX19_02981 0.59 -1.2
243,348 - MPMX19_02981 0.59 -0.8
243,348 - MPMX19_02981 0.59 -0.6
243,348 - MPMX19_02981 0.59 +1.6
243,348 - MPMX19_02981 0.59 -0.5
243,420 - MPMX19_02981 0.66 -0.6
243,611 + MPMX19_02981 0.82 -2.6
243,612 - MPMX19_02981 0.82 -1.1
243,783 - +0.5
243,783 - -0.6
243,783 - -0.4
243,783 - -1.1
243,880 + -2.2
243,881 - -0.6
243,881 - -0.3
243,885 + -2.1
243,885 + -2.2
243,885 + -2.1
243,886 - +0.2
243,933 + +1.0
243,947 - -1.2
243,947 - -0.4
243,947 - +0.3
243,948 + -2.5
243,981 - -0.2
243,981 - -0.8
243,981 - +0.2
243,981 - -1.5
243,992 + -2.4
243,992 + -1.4
243,992 + -3.4
243,993 - -0.4
244,104 - +0.2
244,390 + MPMX19_02982 0.13 -1.1
244,390 + MPMX19_02982 0.13 -1.1
244,390 + MPMX19_02982 0.13 -0.6
244,390 + MPMX19_02982 0.13 -0.4
244,391 - MPMX19_02982 0.13 +0.3
244,391 - MPMX19_02982 0.13 -1.1
244,391 - MPMX19_02982 0.13 -1.6
244,462 + MPMX19_02982 0.20 +0.3
244,462 + MPMX19_02982 0.20 +1.1
244,462 + MPMX19_02982 0.20 -0.1
244,462 + MPMX19_02982 0.20 -0.4
244,463 - MPMX19_02982 0.21 +1.8
244,463 - MPMX19_02982 0.21 -0.6
244,463 - MPMX19_02982 0.21 -0.7
244,594 + MPMX19_02982 0.34 -0.1

Or see this region's nucleotide sequence