Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02976

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02974 and MPMX19_02975 are separated by 41 nucleotidesMPMX19_02975 and MPMX19_02976 are separated by 32 nucleotidesMPMX19_02976 and MPMX19_02977 are separated by 33 nucleotidesMPMX19_02977 and MPMX19_02978 are separated by 19 nucleotides MPMX19_02974: MPMX19_02974 - 3-oxo-isoapionate kinase, at 236,896 to 238,197 _02974 MPMX19_02975: MPMX19_02975 - hypothetical protein, at 238,239 to 238,586 _02975 MPMX19_02976: MPMX19_02976 - Octopine-binding periplasmic protein, at 238,619 to 239,383 _02976 MPMX19_02977: MPMX19_02977 - 2-iminobutanoate/2-iminopropanoate deaminase, at 239,417 to 239,764 _02977 MPMX19_02978: MPMX19_02978 - Hydrogen cyanide synthase subunit HcnC, at 239,784 to 240,926 _02978 Position (kb) 238 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 237.775 kb on + strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 237.776 kb on - strand, within MPMX19_02974at 238.063 kb on + strand, within MPMX19_02974at 238.522 kb on + strand, within MPMX19_02975at 238.523 kb on - strand, within MPMX19_02975at 238.644 kb on + strandat 238.644 kb on + strandat 238.644 kb on + strandat 238.644 kb on + strandat 238.644 kb on + strandat 238.645 kb on - strandat 238.911 kb on + strand, within MPMX19_02976at 238.911 kb on + strand, within MPMX19_02976at 238.911 kb on + strand, within MPMX19_02976at 238.911 kb on + strand, within MPMX19_02976at 238.912 kb on - strand, within MPMX19_02976at 238.912 kb on - strand, within MPMX19_02976at 238.912 kb on - strand, within MPMX19_02976at 238.953 kb on + strand, within MPMX19_02976at 238.954 kb on - strand, within MPMX19_02976at 238.954 kb on - strand, within MPMX19_02976at 238.954 kb on - strand, within MPMX19_02976at 238.954 kb on - strand, within MPMX19_02976at 239.050 kb on - strand, within MPMX19_02976at 239.050 kb on - strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.065 kb on + strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.066 kb on - strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.067 kb on + strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.068 kb on - strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.136 kb on + strand, within MPMX19_02976at 239.137 kb on - strand, within MPMX19_02976at 239.137 kb on - strand, within MPMX19_02976at 239.137 kb on - strand, within MPMX19_02976at 239.137 kb on - strand, within MPMX19_02976at 239.419 kb on - strandat 239.565 kb on + strand, within MPMX19_02977at 239.565 kb on + strand, within MPMX19_02977at 239.566 kb on - strand, within MPMX19_02977at 239.566 kb on - strand, within MPMX19_02977at 239.566 kb on - strand, within MPMX19_02977at 239.566 kb on - strand, within MPMX19_02977at 239.697 kb on + strand, within MPMX19_02977at 239.697 kb on + strand, within MPMX19_02977at 239.697 kb on + strand, within MPMX19_02977at 239.697 kb on + strand, within MPMX19_02977at 239.697 kb on + strand, within MPMX19_02977at 239.698 kb on - strand, within MPMX19_02977at 239.698 kb on - strand, within MPMX19_02977at 239.873 kb on + strandat 239.874 kb on - strandat 239.917 kb on + strand, within MPMX19_02978at 239.917 kb on + strand, within MPMX19_02978at 239.917 kb on + strand, within MPMX19_02978at 239.917 kb on + strand, within MPMX19_02978at 239.918 kb on - strand, within MPMX19_02978at 239.918 kb on - strand, within MPMX19_02978at 239.918 kb on - strand, within MPMX19_02978at 240.354 kb on + strand, within MPMX19_02978at 240.354 kb on + strand, within MPMX19_02978at 240.354 kb on + strand, within MPMX19_02978at 240.354 kb on + strand, within MPMX19_02978at 240.355 kb on - strand, within MPMX19_02978at 240.355 kb on - strand, within MPMX19_02978at 240.355 kb on - strand, within MPMX19_02978at 240.355 kb on - strand, within MPMX19_02978at 240.355 kb on - strand, within MPMX19_02978

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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237,775 + MPMX19_02974 0.68 -2.5
237,776 - MPMX19_02974 0.68 -1.8
237,776 - MPMX19_02974 0.68 +0.0
237,776 - MPMX19_02974 0.68 -0.3
237,776 - MPMX19_02974 0.68 +0.8
238,063 + MPMX19_02974 0.90 +0.5
238,522 + MPMX19_02975 0.81 -0.6
238,523 - MPMX19_02975 0.82 -2.1
238,644 + +0.8
238,644 + -0.5
238,644 + +1.3
238,644 + -0.8
238,644 + +0.9
238,645 - -0.8
238,911 + MPMX19_02976 0.38 -1.2
238,911 + MPMX19_02976 0.38 +1.2
238,911 + MPMX19_02976 0.38 +0.2
238,911 + MPMX19_02976 0.38 +0.2
238,912 - MPMX19_02976 0.38 -0.0
238,912 - MPMX19_02976 0.38 -1.2
238,912 - MPMX19_02976 0.38 +0.5
238,953 + MPMX19_02976 0.44 -0.1
238,954 - MPMX19_02976 0.44 -0.1
238,954 - MPMX19_02976 0.44 -0.2
238,954 - MPMX19_02976 0.44 +1.8
238,954 - MPMX19_02976 0.44 -0.1
239,050 - MPMX19_02976 0.56 -0.4
239,050 - MPMX19_02976 0.56 +0.5
239,065 + MPMX19_02976 0.58 -0.4
239,065 + MPMX19_02976 0.58 +0.7
239,065 + MPMX19_02976 0.58 -2.2
239,065 + MPMX19_02976 0.58 -0.8
239,065 + MPMX19_02976 0.58 +0.2
239,066 - MPMX19_02976 0.58 -0.1
239,066 - MPMX19_02976 0.58 +0.8
239,066 - MPMX19_02976 0.58 +0.6
239,066 - MPMX19_02976 0.58 -1.8
239,066 - MPMX19_02976 0.58 -1.2
239,066 - MPMX19_02976 0.58 -0.4
239,066 - MPMX19_02976 0.58 -0.1
239,066 - MPMX19_02976 0.58 -1.6
239,066 - MPMX19_02976 0.58 +1.8
239,067 + MPMX19_02976 0.59 -0.4
239,067 + MPMX19_02976 0.59 +1.4
239,067 + MPMX19_02976 0.59 +0.6
239,067 + MPMX19_02976 0.59 -0.3
239,067 + MPMX19_02976 0.59 +0.9
239,067 + MPMX19_02976 0.59 -0.2
239,067 + MPMX19_02976 0.59 +0.3
239,067 + MPMX19_02976 0.59 -0.2
239,067 + MPMX19_02976 0.59 +0.8
239,067 + MPMX19_02976 0.59 -2.2
239,067 + MPMX19_02976 0.59 -0.1
239,067 + MPMX19_02976 0.59 +1.2
239,067 + MPMX19_02976 0.59 -0.4
239,067 + MPMX19_02976 0.59 -0.5
239,067 + MPMX19_02976 0.59 -0.6
239,067 + MPMX19_02976 0.59 -0.9
239,067 + MPMX19_02976 0.59 -0.2
239,067 + MPMX19_02976 0.59 +1.2
239,067 + MPMX19_02976 0.59 -0.2
239,067 + MPMX19_02976 0.59 -0.1
239,067 + MPMX19_02976 0.59 -1.1
239,067 + MPMX19_02976 0.59 -1.2
239,067 + MPMX19_02976 0.59 -0.2
239,067 + MPMX19_02976 0.59 -1.2
239,067 + MPMX19_02976 0.59 -1.2
239,067 + MPMX19_02976 0.59 +0.8
239,068 - MPMX19_02976 0.59 -2.6
239,068 - MPMX19_02976 0.59 -0.7
239,068 - MPMX19_02976 0.59 -0.6
239,068 - MPMX19_02976 0.59 +2.0
239,068 - MPMX19_02976 0.59 -0.5
239,068 - MPMX19_02976 0.59 +0.8
239,068 - MPMX19_02976 0.59 -0.8
239,068 - MPMX19_02976 0.59 -0.9
239,068 - MPMX19_02976 0.59 +0.9
239,068 - MPMX19_02976 0.59 +1.1
239,068 - MPMX19_02976 0.59 -0.5
239,068 - MPMX19_02976 0.59 -1.6
239,068 - MPMX19_02976 0.59 +0.1
239,068 - MPMX19_02976 0.59 -0.1
239,068 - MPMX19_02976 0.59 -1.2
239,068 - MPMX19_02976 0.59 -0.1
239,068 - MPMX19_02976 0.59 +0.4
239,068 - MPMX19_02976 0.59 +0.5
239,068 - MPMX19_02976 0.59 -0.3
239,068 - MPMX19_02976 0.59 -2.1
239,068 - MPMX19_02976 0.59 -0.1
239,068 - MPMX19_02976 0.59 -0.2
239,068 - MPMX19_02976 0.59 -1.2
239,068 - MPMX19_02976 0.59 +0.4
239,068 - MPMX19_02976 0.59 -0.4
239,136 + MPMX19_02976 0.68 -1.2
239,136 + MPMX19_02976 0.68 -0.7
239,136 + MPMX19_02976 0.68 -1.4
239,136 + MPMX19_02976 0.68 -1.8
239,136 + MPMX19_02976 0.68 +0.2
239,137 - MPMX19_02976 0.68 -0.8
239,137 - MPMX19_02976 0.68 -1.2
239,137 - MPMX19_02976 0.68 -2.2
239,137 - MPMX19_02976 0.68 +1.3
239,419 - +0.4
239,565 + MPMX19_02977 0.43 -0.3
239,565 + MPMX19_02977 0.43 -0.8
239,566 - MPMX19_02977 0.43 -0.0
239,566 - MPMX19_02977 0.43 +0.2
239,566 - MPMX19_02977 0.43 +0.8
239,566 - MPMX19_02977 0.43 -2.4
239,697 + MPMX19_02977 0.80 -1.0
239,697 + MPMX19_02977 0.80 +0.0
239,697 + MPMX19_02977 0.80 -1.7
239,697 + MPMX19_02977 0.80 +0.4
239,697 + MPMX19_02977 0.80 +0.5
239,698 - MPMX19_02977 0.81 -1.5
239,698 - MPMX19_02977 0.81 -0.4
239,873 + -1.1
239,874 - +0.8
239,917 + MPMX19_02978 0.12 +0.3
239,917 + MPMX19_02978 0.12 -1.6
239,917 + MPMX19_02978 0.12 -2.0
239,917 + MPMX19_02978 0.12 -0.2
239,918 - MPMX19_02978 0.12 -1.0
239,918 - MPMX19_02978 0.12 -0.2
239,918 - MPMX19_02978 0.12 +1.1
240,354 + MPMX19_02978 0.50 -1.3
240,354 + MPMX19_02978 0.50 -1.2
240,354 + MPMX19_02978 0.50 -0.9
240,354 + MPMX19_02978 0.50 -1.1
240,355 - MPMX19_02978 0.50 -0.2
240,355 - MPMX19_02978 0.50 -0.5
240,355 - MPMX19_02978 0.50 -1.2
240,355 - MPMX19_02978 0.50 -1.2
240,355 - MPMX19_02978 0.50 +0.2

Or see this region's nucleotide sequence