Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02966

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02963 and MPMX19_02964 overlap by 1 nucleotidesMPMX19_02964 and MPMX19_02965 are separated by 30 nucleotidesMPMX19_02965 and MPMX19_02966 are separated by 249 nucleotidesMPMX19_02966 and MPMX19_02967 are separated by 5 nucleotides MPMX19_02963: MPMX19_02963 - hypothetical protein, at 224,412 to 224,672 _02963 MPMX19_02964: MPMX19_02964 - hypothetical protein, at 224,672 to 224,851 _02964 MPMX19_02965: MPMX19_02965 - hypothetical protein, at 224,882 to 225,073 _02965 MPMX19_02966: MPMX19_02966 - Carboxylesterase NlhH, at 225,323 to 226,096 _02966 MPMX19_02967: MPMX19_02967 - Efflux pump periplasmic linker BepF, at 226,102 to 227,265 _02967 Position (kb) 225 226 227Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 224.330 kb on - strandat 224.330 kb on - strandat 224.371 kb on - strandat 224.371 kb on - strandat 224.444 kb on + strand, within MPMX19_02963at 224.488 kb on + strand, within MPMX19_02963at 224.489 kb on - strand, within MPMX19_02963at 224.489 kb on - strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.506 kb on + strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.507 kb on - strand, within MPMX19_02963at 224.508 kb on + strand, within MPMX19_02963at 224.508 kb on + strand, within MPMX19_02963at 224.508 kb on + strand, within MPMX19_02963at 224.509 kb on - strand, within MPMX19_02963at 224.509 kb on - strand, within MPMX19_02963at 224.635 kb on + strand, within MPMX19_02963at 224.636 kb on - strand, within MPMX19_02963at 224.788 kb on - strand, within MPMX19_02964at 224.852 kb on - strandat 224.873 kb on - strandat 224.873 kb on - strandat 224.873 kb on - strandat 224.942 kb on - strand, within MPMX19_02965at 224.942 kb on - strand, within MPMX19_02965at 224.962 kb on + strand, within MPMX19_02965at 224.963 kb on - strand, within MPMX19_02965at 224.963 kb on - strand, within MPMX19_02965at 224.964 kb on + strand, within MPMX19_02965at 224.964 kb on + strand, within MPMX19_02965at 224.964 kb on + strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 224.965 kb on - strand, within MPMX19_02965at 225.067 kb on - strandat 225.092 kb on + strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.093 kb on - strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.110 kb on + strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.111 kb on - strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.112 kb on + strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.113 kb on - strandat 225.170 kb on - strandat 225.198 kb on - strandat 225.252 kb on + strandat 225.252 kb on + strandat 225.253 kb on - strandat 225.253 kb on - strandat 225.253 kb on - strandat 225.258 kb on - strandat 225.276 kb on + strandat 225.276 kb on + strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.277 kb on - strandat 225.419 kb on + strand, within MPMX19_02966at 225.419 kb on + strand, within MPMX19_02966at 225.419 kb on + strand, within MPMX19_02966at 225.419 kb on + strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.420 kb on - strand, within MPMX19_02966at 225.521 kb on + strand, within MPMX19_02966at 225.794 kb on + strand, within MPMX19_02966at 225.803 kb on + strand, within MPMX19_02966at 225.803 kb on + strand, within MPMX19_02966at 225.804 kb on - strand, within MPMX19_02966at 225.804 kb on - strand, within MPMX19_02966at 225.836 kb on + strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.837 kb on - strand, within MPMX19_02966at 225.932 kb on + strand, within MPMX19_02966at 225.932 kb on + strand, within MPMX19_02966at 225.932 kb on + strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 225.933 kb on - strand, within MPMX19_02966at 226.095 kb on - strandat 226.095 kb on - strandat 226.095 kb on - strandat 226.276 kb on + strand, within MPMX19_02967at 226.276 kb on + strand, within MPMX19_02967at 226.276 kb on + strand, within MPMX19_02967at 226.277 kb on - strand, within MPMX19_02967at 226.277 kb on - strand, within MPMX19_02967at 226.277 kb on - strand, within MPMX19_02967at 226.411 kb on + strand, within MPMX19_02967at 226.412 kb on - strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.750 kb on + strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.751 kb on - strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.780 kb on + strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.781 kb on - strand, within MPMX19_02967at 226.855 kb on + strand, within MPMX19_02967at 226.855 kb on + strand, within MPMX19_02967at 226.856 kb on - strand, within MPMX19_02967at 226.856 kb on - strand, within MPMX19_02967at 226.856 kb on - strand, within MPMX19_02967at 226.856 kb on - strand, within MPMX19_02967at 226.970 kb on - strand, within MPMX19_02967at 226.970 kb on - strand, within MPMX19_02967at 227.002 kb on + strand, within MPMX19_02967at 227.003 kb on - strand, within MPMX19_02967at 227.092 kb on + strand, within MPMX19_02967at 227.093 kb on - strand, within MPMX19_02967

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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224,330 - -0.7
224,330 - -1.6
224,371 - -1.4
224,371 - -0.8
224,444 + MPMX19_02963 0.12 +1.1
224,488 + MPMX19_02963 0.29 -0.3
224,489 - MPMX19_02963 0.30 +1.6
224,489 - MPMX19_02963 0.30 -1.3
224,506 + MPMX19_02963 0.36 +0.0
224,506 + MPMX19_02963 0.36 -2.6
224,506 + MPMX19_02963 0.36 +1.2
224,506 + MPMX19_02963 0.36 -1.1
224,506 + MPMX19_02963 0.36 +0.2
224,506 + MPMX19_02963 0.36 -1.4
224,506 + MPMX19_02963 0.36 -0.9
224,506 + MPMX19_02963 0.36 -1.6
224,506 + MPMX19_02963 0.36 +1.7
224,506 + MPMX19_02963 0.36 +0.6
224,506 + MPMX19_02963 0.36 +0.3
224,506 + MPMX19_02963 0.36 +0.2
224,506 + MPMX19_02963 0.36 -0.6
224,506 + MPMX19_02963 0.36 -0.4
224,506 + MPMX19_02963 0.36 +0.7
224,506 + MPMX19_02963 0.36 +0.6
224,507 - MPMX19_02963 0.36 -2.4
224,507 - MPMX19_02963 0.36 +0.2
224,507 - MPMX19_02963 0.36 +0.4
224,507 - MPMX19_02963 0.36 +0.2
224,507 - MPMX19_02963 0.36 -0.6
224,507 - MPMX19_02963 0.36 -0.7
224,507 - MPMX19_02963 0.36 -0.6
224,507 - MPMX19_02963 0.36 -0.6
224,507 - MPMX19_02963 0.36 +0.1
224,507 - MPMX19_02963 0.36 -1.9
224,508 + MPMX19_02963 0.37 -0.6
224,508 + MPMX19_02963 0.37 +0.5
224,508 + MPMX19_02963 0.37 -0.3
224,509 - MPMX19_02963 0.37 +0.2
224,509 - MPMX19_02963 0.37 -2.8
224,635 + MPMX19_02963 0.85 -1.1
224,636 - MPMX19_02963 0.86 -1.0
224,788 - MPMX19_02964 0.64 -0.7
224,852 - -1.3
224,873 - +0.9
224,873 - -0.5
224,873 - +0.0
224,942 - MPMX19_02965 0.31 -0.7
224,942 - MPMX19_02965 0.31 -0.9
224,962 + MPMX19_02965 0.42 -0.1
224,963 - MPMX19_02965 0.42 +0.2
224,963 - MPMX19_02965 0.42 -0.5
224,964 + MPMX19_02965 0.43 -0.6
224,964 + MPMX19_02965 0.43 -2.4
224,964 + MPMX19_02965 0.43 -1.1
224,965 - MPMX19_02965 0.43 +1.7
224,965 - MPMX19_02965 0.43 +1.0
224,965 - MPMX19_02965 0.43 -1.8
224,965 - MPMX19_02965 0.43 -1.5
224,965 - MPMX19_02965 0.43 -0.4
225,067 - -0.8
225,092 + +1.0
225,093 - -1.0
225,093 - +0.3
225,093 - -0.7
225,093 - +1.2
225,093 - -1.0
225,110 + -1.9
225,110 + -0.2
225,110 + +0.6
225,110 + -1.4
225,110 + -0.6
225,110 + -0.7
225,110 + -1.8
225,110 + +0.0
225,110 + -0.3
225,110 + -0.8
225,110 + -0.1
225,110 + -1.6
225,110 + -1.7
225,110 + +1.2
225,111 - -0.6
225,111 - -2.1
225,111 - -0.8
225,111 - -0.3
225,111 - -0.9
225,111 - -0.6
225,111 - -3.1
225,111 - -0.6
225,112 + +1.0
225,112 + +0.7
225,112 + -1.9
225,112 + -0.3
225,112 + +0.3
225,112 + -0.8
225,112 + -0.5
225,112 + -1.3
225,112 + -0.1
225,112 + -0.8
225,112 + -0.6
225,112 + -0.7
225,112 + -1.7
225,112 + -0.3
225,112 + +1.7
225,112 + +1.3
225,112 + -0.6
225,113 - -0.7
225,113 - -1.1
225,113 - -0.7
225,113 - -0.3
225,113 - +0.2
225,113 - -1.1
225,113 - -0.8
225,113 - -0.3
225,113 - -2.2
225,113 - -1.3
225,170 - +0.7
225,198 - +0.9
225,252 + -0.6
225,252 + -0.1
225,253 - -2.5
225,253 - -2.7
225,253 - -1.3
225,258 - -1.8
225,276 + -0.6
225,276 + -0.9
225,277 - +0.2
225,277 - -0.6
225,277 - -1.1
225,277 - -0.5
225,277 - -1.0
225,277 - -1.4
225,277 - -1.1
225,419 + MPMX19_02966 0.12 -0.5
225,419 + MPMX19_02966 0.12 -1.1
225,419 + MPMX19_02966 0.12 -1.2
225,419 + MPMX19_02966 0.12 -0.8
225,420 - MPMX19_02966 0.13 +0.1
225,420 - MPMX19_02966 0.13 -0.9
225,420 - MPMX19_02966 0.13 +0.3
225,420 - MPMX19_02966 0.13 -1.0
225,420 - MPMX19_02966 0.13 -1.3
225,521 + MPMX19_02966 0.26 -1.3
225,794 + MPMX19_02966 0.61 -0.7
225,803 + MPMX19_02966 0.62 -0.5
225,803 + MPMX19_02966 0.62 -1.1
225,804 - MPMX19_02966 0.62 -1.6
225,804 - MPMX19_02966 0.62 -1.3
225,836 + MPMX19_02966 0.66 +0.3
225,837 - MPMX19_02966 0.66 +0.1
225,837 - MPMX19_02966 0.66 -1.0
225,837 - MPMX19_02966 0.66 -0.8
225,837 - MPMX19_02966 0.66 -1.6
225,837 - MPMX19_02966 0.66 -1.0
225,932 + MPMX19_02966 0.79 -2.0
225,932 + MPMX19_02966 0.79 +0.2
225,932 + MPMX19_02966 0.79 -2.0
225,933 - MPMX19_02966 0.79 -0.2
225,933 - MPMX19_02966 0.79 -0.6
225,933 - MPMX19_02966 0.79 -1.3
225,933 - MPMX19_02966 0.79 -1.8
225,933 - MPMX19_02966 0.79 -0.2
226,095 - -0.6
226,095 - +0.0
226,095 - -1.8
226,276 + MPMX19_02967 0.15 +0.2
226,276 + MPMX19_02967 0.15 -1.9
226,276 + MPMX19_02967 0.15 -0.5
226,277 - MPMX19_02967 0.15 +1.0
226,277 - MPMX19_02967 0.15 +0.3
226,277 - MPMX19_02967 0.15 -0.4
226,411 + MPMX19_02967 0.27 +1.8
226,412 - MPMX19_02967 0.27 -0.7
226,750 + MPMX19_02967 0.56 +0.4
226,750 + MPMX19_02967 0.56 -0.3
226,750 + MPMX19_02967 0.56 +0.0
226,750 + MPMX19_02967 0.56 +0.0
226,750 + MPMX19_02967 0.56 -0.6
226,750 + MPMX19_02967 0.56 +0.3
226,751 - MPMX19_02967 0.56 -0.6
226,751 - MPMX19_02967 0.56 +0.4
226,751 - MPMX19_02967 0.56 -1.2
226,751 - MPMX19_02967 0.56 -2.3
226,751 - MPMX19_02967 0.56 -1.2
226,751 - MPMX19_02967 0.56 -0.4
226,751 - MPMX19_02967 0.56 +1.2
226,751 - MPMX19_02967 0.56 -2.4
226,751 - MPMX19_02967 0.56 -0.2
226,751 - MPMX19_02967 0.56 -0.8
226,780 + MPMX19_02967 0.58 +0.0
226,780 + MPMX19_02967 0.58 -1.1
226,780 + MPMX19_02967 0.58 -0.4
226,780 + MPMX19_02967 0.58 -0.5
226,780 + MPMX19_02967 0.58 -0.2
226,780 + MPMX19_02967 0.58 -1.6
226,780 + MPMX19_02967 0.58 -0.7
226,780 + MPMX19_02967 0.58 -1.2
226,781 - MPMX19_02967 0.58 +0.0
226,781 - MPMX19_02967 0.58 -0.6
226,781 - MPMX19_02967 0.58 +0.2
226,781 - MPMX19_02967 0.58 +0.9
226,781 - MPMX19_02967 0.58 -0.4
226,781 - MPMX19_02967 0.58 -3.2
226,781 - MPMX19_02967 0.58 -1.3
226,855 + MPMX19_02967 0.65 -0.2
226,855 + MPMX19_02967 0.65 -1.0
226,856 - MPMX19_02967 0.65 -0.2
226,856 - MPMX19_02967 0.65 +1.0
226,856 - MPMX19_02967 0.65 -0.5
226,856 - MPMX19_02967 0.65 -1.1
226,970 - MPMX19_02967 0.75 -0.2
226,970 - MPMX19_02967 0.75 -0.6
227,002 + MPMX19_02967 0.77 +0.5
227,003 - MPMX19_02967 0.77 -0.2
227,092 + MPMX19_02967 0.85 -0.6
227,093 - MPMX19_02967 0.85 -0.8

Or see this region's nucleotide sequence