Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02924

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02922 and MPMX19_02923 overlap by 4 nucleotidesMPMX19_02923 and MPMX19_02924 overlap by 26 nucleotidesMPMX19_02924 and MPMX19_02925 are separated by 27 nucleotides MPMX19_02922: MPMX19_02922 - Formyltransferase/hydrolase complex subunit D, at 177,066 to 177,989 _02922 MPMX19_02923: MPMX19_02923 - Formyltransferase/hydrolase complex Fhc subunit C, at 177,986 to 178,741 _02923 MPMX19_02924: MPMX19_02924 - hypothetical protein, at 178,716 to 179,981 _02924 MPMX19_02925: MPMX19_02925 - Hydrazine synthase subunit beta, at 180,009 to 180,983 _02925 Position (kb) 178 179 180Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 178.454 kb on + strand, within MPMX19_02923at 178.756 kb on + strandat 178.756 kb on + strandat 178.756 kb on + strandat 178.756 kb on + strandat 178.757 kb on - strandat 178.757 kb on - strandat 178.757 kb on - strandat 178.757 kb on - strandat 178.881 kb on + strand, within MPMX19_02924at 178.882 kb on - strand, within MPMX19_02924at 178.882 kb on - strand, within MPMX19_02924at 179.014 kb on - strand, within MPMX19_02924at 179.192 kb on + strand, within MPMX19_02924at 179.192 kb on + strand, within MPMX19_02924at 179.193 kb on - strand, within MPMX19_02924at 179.193 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.275 kb on - strand, within MPMX19_02924at 179.340 kb on + strand, within MPMX19_02924at 179.340 kb on + strand, within MPMX19_02924at 179.340 kb on + strand, within MPMX19_02924at 179.341 kb on - strand, within MPMX19_02924at 179.341 kb on - strand, within MPMX19_02924at 179.490 kb on + strand, within MPMX19_02924at 179.535 kb on + strand, within MPMX19_02924at 179.535 kb on + strand, within MPMX19_02924at 179.535 kb on + strand, within MPMX19_02924at 179.688 kb on + strand, within MPMX19_02924at 179.688 kb on + strand, within MPMX19_02924at 179.689 kb on - strand, within MPMX19_02924at 179.689 kb on - strand, within MPMX19_02924at 179.689 kb on - strand, within MPMX19_02924at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.216 kb on + strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.217 kb on - strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.342 kb on + strand, within MPMX19_02925at 180.343 kb on - strand, within MPMX19_02925at 180.411 kb on - strand, within MPMX19_02925at 180.411 kb on - strand, within MPMX19_02925at 180.811 kb on - strand, within MPMX19_02925at 180.811 kb on - strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
178,454 + MPMX19_02923 0.62 +0.9
178,756 + -0.2
178,756 + -0.4
178,756 + +1.0
178,756 + -1.2
178,757 - +0.4
178,757 - -2.1
178,757 - -1.9
178,757 - +1.0
178,881 + MPMX19_02924 0.13 -2.6
178,882 - MPMX19_02924 0.13 -0.6
178,882 - MPMX19_02924 0.13 +0.8
179,014 - MPMX19_02924 0.24 -0.5
179,192 + MPMX19_02924 0.38 +0.2
179,192 + MPMX19_02924 0.38 +0.0
179,193 - MPMX19_02924 0.38 -2.0
179,193 - MPMX19_02924 0.38 -0.5
179,275 - MPMX19_02924 0.44 -1.2
179,275 - MPMX19_02924 0.44 -0.6
179,275 - MPMX19_02924 0.44 +0.1
179,275 - MPMX19_02924 0.44 -0.6
179,275 - MPMX19_02924 0.44 +0.0
179,340 + MPMX19_02924 0.49 -0.8
179,340 + MPMX19_02924 0.49 -0.9
179,340 + MPMX19_02924 0.49 -1.4
179,341 - MPMX19_02924 0.49 +0.2
179,341 - MPMX19_02924 0.49 -1.2
179,490 + MPMX19_02924 0.61 -0.7
179,535 + MPMX19_02924 0.65 -1.0
179,535 + MPMX19_02924 0.65 +1.3
179,535 + MPMX19_02924 0.65 +0.3
179,688 + MPMX19_02924 0.77 -0.6
179,688 + MPMX19_02924 0.77 -1.9
179,689 - MPMX19_02924 0.77 -1.2
179,689 - MPMX19_02924 0.77 -2.0
179,689 - MPMX19_02924 0.77 +0.8
180,216 + MPMX19_02925 0.21 -0.5
180,216 + MPMX19_02925 0.21 -1.2
180,216 + MPMX19_02925 0.21 +1.8
180,216 + MPMX19_02925 0.21 -1.0
180,216 + MPMX19_02925 0.21 -1.8
180,216 + MPMX19_02925 0.21 -0.2
180,216 + MPMX19_02925 0.21 -3.0
180,216 + MPMX19_02925 0.21 +1.2
180,216 + MPMX19_02925 0.21 -0.6
180,216 + MPMX19_02925 0.21 -0.6
180,216 + MPMX19_02925 0.21 -1.1
180,217 - MPMX19_02925 0.21 -0.1
180,217 - MPMX19_02925 0.21 -1.7
180,217 - MPMX19_02925 0.21 -0.6
180,217 - MPMX19_02925 0.21 -0.4
180,217 - MPMX19_02925 0.21 -1.6
180,217 - MPMX19_02925 0.21 -1.8
180,217 - MPMX19_02925 0.21 -1.7
180,217 - MPMX19_02925 0.21 -0.1
180,217 - MPMX19_02925 0.21 +0.9
180,217 - MPMX19_02925 0.21 +0.0
180,217 - MPMX19_02925 0.21 -1.3
180,217 - MPMX19_02925 0.21 -0.9
180,342 + MPMX19_02925 0.34 +0.8
180,342 + MPMX19_02925 0.34 -1.1
180,342 + MPMX19_02925 0.34 -0.2
180,343 - MPMX19_02925 0.34 +1.3
180,411 - MPMX19_02925 0.41 -0.6
180,411 - MPMX19_02925 0.41 -0.4
180,811 - MPMX19_02925 0.82 -2.4
180,811 - MPMX19_02925 0.82 +0.8
180,870 + MPMX19_02925 0.88 +1.1
180,870 + MPMX19_02925 0.88 -1.2
180,870 + MPMX19_02925 0.88 -0.2
180,870 + MPMX19_02925 0.88 +0.2
180,870 + MPMX19_02925 0.88 -2.7
180,871 - MPMX19_02925 0.88 -1.2
180,871 - MPMX19_02925 0.88 -0.6
180,871 - MPMX19_02925 0.88 -0.6

Or see this region's nucleotide sequence