Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02917 and MPMX19_02918 overlap by 4 nucleotides MPMX19_02918 and MPMX19_02919 are separated by 16 nucleotides MPMX19_02919 and MPMX19_02920 are separated by 293 nucleotides
MPMX19_02917: MPMX19_02917 - Methenyltetrahydromethanopterin cyclohydrolase, at 170,895 to 171,899
_02917
MPMX19_02918: MPMX19_02918 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 171,896 to 172,804
_02918
MPMX19_02919: MPMX19_02919 - hypothetical protein, at 172,821 to 173,837
_02919
MPMX19_02920: MPMX19_02920 - hypothetical protein, at 174,131 to 175,396
_02920
Position (kb)
172
173
174 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.413 kb on + strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.414 kb on - strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.701 kb on + strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.702 kb on - strand, within MPMX19_02918 at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.791 kb on + strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 172.792 kb on - strand at 173.943 kb on + strand at 173.944 kb on - strand at 174.308 kb on + strand, within MPMX19_02920
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 172,413 + MPMX19_02918 0.57 -0.2 172,413 + MPMX19_02918 0.57 -1.4 172,413 + MPMX19_02918 0.57 -0.9 172,413 + MPMX19_02918 0.57 -1.1 172,413 + MPMX19_02918 0.57 -1.6 172,413 + MPMX19_02918 0.57 -0.7 172,413 + MPMX19_02918 0.57 -1.2 172,413 + MPMX19_02918 0.57 -1.4 172,413 + MPMX19_02918 0.57 -0.6 172,414 - MPMX19_02918 0.57 +0.5 172,414 - MPMX19_02918 0.57 -2.1 172,414 - MPMX19_02918 0.57 +1.8 172,414 - MPMX19_02918 0.57 -1.1 172,701 + MPMX19_02918 0.89 -0.0 172,701 + MPMX19_02918 0.89 -1.6 172,702 - MPMX19_02918 0.89 -0.7 172,702 - MPMX19_02918 0.89 -1.6 172,702 - MPMX19_02918 0.89 +0.3 172,791 + +1.5 172,791 + +0.7 172,791 + +0.8 172,791 + +0.7 172,791 + +0.8 172,791 + -0.3 172,791 + +0.4 172,791 + +0.2 172,791 + -0.2 172,791 + -0.4 172,791 + -0.4 172,791 + -0.9 172,791 + +0.8 172,792 - -1.1 172,792 - -1.1 172,792 - -1.1 172,792 - -0.8 172,792 - +1.3 172,792 - -1.6 172,792 - +0.5 172,792 - -1.2 172,792 - -0.1 172,792 - +0.3 172,792 - -0.4 172,792 - -1.7 172,792 - -0.8 173,943 + -1.4 173,944 - -1.8 174,308 + MPMX19_02920 0.14 -0.1
Or see this region's nucleotide sequence