Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02915

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02913 and MPMX19_02914 are separated by 7 nucleotidesMPMX19_02914 and MPMX19_02915 are separated by 11 nucleotidesMPMX19_02915 and MPMX19_02916 overlap by 4 nucleotidesMPMX19_02916 and MPMX19_02917 overlap by 4 nucleotides MPMX19_02913: MPMX19_02913 - hypothetical protein, at 167,933 to 168,277 _02913 MPMX19_02914: MPMX19_02914 - hypothetical protein, at 168,285 to 169,109 _02914 MPMX19_02915: MPMX19_02915 - hypothetical protein, at 169,121 to 170,047 _02915 MPMX19_02916: MPMX19_02916 - hypothetical protein, at 170,044 to 170,898 _02916 MPMX19_02917: MPMX19_02917 - Methenyltetrahydromethanopterin cyclohydrolase, at 170,895 to 171,899 _02917 Position (kb) 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.138 kb on - strand, within MPMX19_02913at 168.138 kb on - strand, within MPMX19_02913at 168.138 kb on - strand, within MPMX19_02913at 168.286 kb on + strandat 168.287 kb on - strandat 168.287 kb on - strandat 168.287 kb on - strandat 168.287 kb on - strandat 168.494 kb on + strand, within MPMX19_02914at 168.494 kb on + strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.698 kb on - strand, within MPMX19_02914at 168.698 kb on - strand, within MPMX19_02914at 168.749 kb on + strand, within MPMX19_02914at 168.749 kb on + strand, within MPMX19_02914at 168.750 kb on - strand, within MPMX19_02914at 168.750 kb on - strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 169.122 kb on + strandat 169.122 kb on + strandat 169.122 kb on + strandat 169.122 kb on + strandat 169.123 kb on - strandat 169.123 kb on - strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.288 kb on - strand, within MPMX19_02915at 169.644 kb on + strand, within MPMX19_02915at 169.644 kb on + strand, within MPMX19_02915at 169.645 kb on - strand, within MPMX19_02915at 169.645 kb on - strand, within MPMX19_02915at 169.645 kb on - strand, within MPMX19_02915at 170.006 kb on + strandat 170.006 kb on + strandat 170.006 kb on + strandat 170.006 kb on + strandat 170.006 kb on + strandat 170.007 kb on - strandat 170.007 kb on - strandat 170.007 kb on - strandat 170.318 kb on + strand, within MPMX19_02916at 170.319 kb on - strand, within MPMX19_02916at 170.319 kb on - strand, within MPMX19_02916at 170.380 kb on + strand, within MPMX19_02916at 170.380 kb on + strand, within MPMX19_02916at 170.380 kb on + strand, within MPMX19_02916at 170.380 kb on + strand, within MPMX19_02916at 170.381 kb on - strand, within MPMX19_02916at 170.381 kb on - strand, within MPMX19_02916at 170.412 kb on - strand, within MPMX19_02916at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.040 kb on + strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917at 171.041 kb on - strand, within MPMX19_02917

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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168,128 + MPMX19_02913 0.57 -1.1
168,128 + MPMX19_02913 0.57 +1.2
168,128 + MPMX19_02913 0.57 +0.6
168,128 + MPMX19_02913 0.57 -0.6
168,128 + MPMX19_02913 0.57 -1.6
168,128 - MPMX19_02913 0.57 +0.0
168,129 - MPMX19_02913 0.57 -1.0
168,129 - MPMX19_02913 0.57 -1.6
168,129 - MPMX19_02913 0.57 -1.2
168,129 - MPMX19_02913 0.57 -0.2
168,129 - MPMX19_02913 0.57 -0.4
168,129 - MPMX19_02913 0.57 -0.1
168,129 - MPMX19_02913 0.57 +1.1
168,137 + MPMX19_02913 0.59 -1.5
168,137 + MPMX19_02913 0.59 -0.5
168,137 + MPMX19_02913 0.59 +0.8
168,137 + MPMX19_02913 0.59 -1.3
168,137 + MPMX19_02913 0.59 -0.6
168,137 + MPMX19_02913 0.59 -0.7
168,137 + MPMX19_02913 0.59 +0.6
168,138 - MPMX19_02913 0.59 -1.3
168,138 - MPMX19_02913 0.59 +1.5
168,138 - MPMX19_02913 0.59 -1.8
168,286 + +0.4
168,287 - -0.3
168,287 - +1.3
168,287 - +0.0
168,287 - +1.0
168,494 + MPMX19_02914 0.25 +0.2
168,494 + MPMX19_02914 0.25 -1.2
168,495 - MPMX19_02914 0.25 -0.6
168,495 - MPMX19_02914 0.25 -0.1
168,495 - MPMX19_02914 0.25 -0.7
168,495 - MPMX19_02914 0.25 -0.3
168,495 - MPMX19_02914 0.25 +1.1
168,495 - MPMX19_02914 0.25 -1.6
168,495 - MPMX19_02914 0.25 +0.5
168,496 + MPMX19_02914 0.26 -0.8
168,496 + MPMX19_02914 0.26 -1.0
168,496 + MPMX19_02914 0.26 -1.0
168,496 + MPMX19_02914 0.26 +0.2
168,496 + MPMX19_02914 0.26 +0.2
168,496 + MPMX19_02914 0.26 +0.3
168,496 + MPMX19_02914 0.26 -0.7
168,496 + MPMX19_02914 0.26 +1.4
168,496 + MPMX19_02914 0.26 -0.6
168,497 - MPMX19_02914 0.26 -0.6
168,497 - MPMX19_02914 0.26 -0.2
168,497 - MPMX19_02914 0.26 -0.6
168,497 - MPMX19_02914 0.26 -1.2
168,497 - MPMX19_02914 0.26 +0.9
168,497 - MPMX19_02914 0.26 +0.8
168,497 - MPMX19_02914 0.26 -0.5
168,511 + MPMX19_02914 0.27 -0.8
168,511 + MPMX19_02914 0.27 -1.1
168,511 + MPMX19_02914 0.27 -1.5
168,511 + MPMX19_02914 0.27 -0.1
168,511 + MPMX19_02914 0.27 -0.8
168,511 + MPMX19_02914 0.27 -1.1
168,511 + MPMX19_02914 0.27 +0.0
168,511 + MPMX19_02914 0.27 -0.1
168,511 + MPMX19_02914 0.27 +0.0
168,511 + MPMX19_02914 0.27 +0.3
168,511 + MPMX19_02914 0.27 -0.2
168,512 - MPMX19_02914 0.28 -0.4
168,512 - MPMX19_02914 0.28 -0.0
168,512 - MPMX19_02914 0.28 -0.7
168,512 - MPMX19_02914 0.28 +0.4
168,512 - MPMX19_02914 0.28 -0.2
168,512 - MPMX19_02914 0.28 -0.2
168,512 - MPMX19_02914 0.28 +0.9
168,512 - MPMX19_02914 0.28 -1.8
168,512 - MPMX19_02914 0.28 +0.1
168,512 - MPMX19_02914 0.28 +1.1
168,512 - MPMX19_02914 0.28 -1.4
168,512 - MPMX19_02914 0.28 -2.7
168,697 + MPMX19_02914 0.50 -1.4
168,697 + MPMX19_02914 0.50 +0.5
168,697 + MPMX19_02914 0.50 -0.2
168,697 + MPMX19_02914 0.50 -1.1
168,697 + MPMX19_02914 0.50 -2.5
168,697 + MPMX19_02914 0.50 -0.3
168,697 + MPMX19_02914 0.50 +0.2
168,698 - MPMX19_02914 0.50 -1.1
168,698 - MPMX19_02914 0.50 -0.8
168,749 + MPMX19_02914 0.56 +0.1
168,749 + MPMX19_02914 0.56 -2.1
168,750 - MPMX19_02914 0.56 +0.3
168,750 - MPMX19_02914 0.56 -0.8
168,988 + MPMX19_02914 0.85 -0.1
168,988 + MPMX19_02914 0.85 -0.9
168,988 + MPMX19_02914 0.85 -0.5
168,988 + MPMX19_02914 0.85 -0.8
168,988 + MPMX19_02914 0.85 -0.2
168,988 + MPMX19_02914 0.85 -0.3
168,988 + MPMX19_02914 0.85 -0.3
168,988 + MPMX19_02914 0.85 +0.5
168,988 + MPMX19_02914 0.85 -1.2
168,988 + MPMX19_02914 0.85 -0.2
168,988 + MPMX19_02914 0.85 -0.8
168,988 + MPMX19_02914 0.85 +0.2
168,988 + MPMX19_02914 0.85 -0.7
168,988 + MPMX19_02914 0.85 -1.0
168,988 + MPMX19_02914 0.85 +0.5
168,988 + MPMX19_02914 0.85 -1.3
168,988 + MPMX19_02914 0.85 -0.7
168,989 - MPMX19_02914 0.85 -0.4
168,989 - MPMX19_02914 0.85 -0.1
168,989 - MPMX19_02914 0.85 -0.7
168,989 - MPMX19_02914 0.85 -0.7
168,989 - MPMX19_02914 0.85 +1.8
168,989 - MPMX19_02914 0.85 +0.8
168,989 - MPMX19_02914 0.85 -0.4
168,989 - MPMX19_02914 0.85 +0.0
168,989 - MPMX19_02914 0.85 +0.2
168,989 - MPMX19_02914 0.85 -0.4
168,989 - MPMX19_02914 0.85 -1.1
168,989 - MPMX19_02914 0.85 -0.8
168,989 - MPMX19_02914 0.85 -0.8
168,989 - MPMX19_02914 0.85 -0.7
168,989 - MPMX19_02914 0.85 -1.2
168,989 - MPMX19_02914 0.85 -1.7
169,122 + -1.2
169,122 + -0.3
169,122 + -1.1
169,122 + +0.4
169,123 - +0.4
169,123 - -0.8
169,170 + +0.4
169,170 + -0.1
169,170 + -1.3
169,170 + -0.6
169,170 + +0.3
169,170 + -2.0
169,170 + +0.1
169,170 + -1.8
169,170 + -0.6
169,170 + -0.7
169,170 + -1.7
169,170 + -0.6
169,171 - -1.2
169,171 - +0.8
169,171 - -1.0
169,171 - +0.0
169,171 - +0.3
169,171 - -0.2
169,171 - +0.9
169,171 - +0.6
169,171 - +1.0
169,171 - -0.5
169,171 - -0.5
169,171 - -0.8
169,171 - -1.1
169,171 - +1.0
169,171 - -0.9
169,171 - -1.4
169,171 - -1.6
169,171 - -1.0
169,288 - MPMX19_02915 0.18 +0.3
169,644 + MPMX19_02915 0.56 -0.1
169,644 + MPMX19_02915 0.56 +0.2
169,645 - MPMX19_02915 0.57 +1.8
169,645 - MPMX19_02915 0.57 -1.4
169,645 - MPMX19_02915 0.57 +0.9
170,006 + +0.4
170,006 + -0.8
170,006 + -1.8
170,006 + -0.8
170,006 + -1.7
170,007 - +0.5
170,007 - +0.2
170,007 - -0.0
170,318 + MPMX19_02916 0.32 -1.7
170,319 - MPMX19_02916 0.32 -1.8
170,319 - MPMX19_02916 0.32 +0.1
170,380 + MPMX19_02916 0.39 +0.3
170,380 + MPMX19_02916 0.39 -1.4
170,380 + MPMX19_02916 0.39 -1.7
170,380 + MPMX19_02916 0.39 -0.4
170,381 - MPMX19_02916 0.39 -1.2
170,381 - MPMX19_02916 0.39 +1.0
170,412 - MPMX19_02916 0.43 -0.8
171,040 + MPMX19_02917 0.14 -0.6
171,040 + MPMX19_02917 0.14 -1.8
171,040 + MPMX19_02917 0.14 +1.1
171,040 + MPMX19_02917 0.14 +0.6
171,040 + MPMX19_02917 0.14 +1.3
171,040 + MPMX19_02917 0.14 -0.5
171,040 + MPMX19_02917 0.14 -0.9
171,041 - MPMX19_02917 0.15 -1.4
171,041 - MPMX19_02917 0.15 -0.7
171,041 - MPMX19_02917 0.15 -0.5
171,041 - MPMX19_02917 0.15 +0.1
171,041 - MPMX19_02917 0.15 -3.0
171,041 - MPMX19_02917 0.15 -0.5

Or see this region's nucleotide sequence