Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02862

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02860 and MPMX19_02861 are separated by 136 nucleotidesMPMX19_02861 and MPMX19_02862 are separated by 32 nucleotidesMPMX19_02862 and MPMX19_02863 are separated by 394 nucleotides MPMX19_02860: MPMX19_02860 - hypothetical protein, at 104,685 to 105,251 _02860 MPMX19_02861: MPMX19_02861 - hypothetical protein, at 105,388 to 106,071 _02861 MPMX19_02862: MPMX19_02862 - hypothetical protein, at 106,104 to 106,541 _02862 MPMX19_02863: MPMX19_02863 - putative TonB-dependent receptor BfrD, at 106,936 to 109,233 _02863 Position (kb) 106 107Strain fitness (log2 ratio) -2 -1 0 1 2at 105.275 kb on - strandat 105.338 kb on + strandat 105.338 kb on + strandat 105.338 kb on + strandat 105.410 kb on - strandat 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.479 kb on + strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.480 kb on - strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.631 kb on + strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.632 kb on - strand, within MPMX19_02861at 105.658 kb on + strand, within MPMX19_02861at 105.658 kb on + strand, within MPMX19_02861at 105.658 kb on + strand, within MPMX19_02861at 105.658 kb on + strand, within MPMX19_02861at 105.659 kb on - strand, within MPMX19_02861at 105.659 kb on - strand, within MPMX19_02861at 105.659 kb on - strand, within MPMX19_02861at 105.659 kb on - strand, within MPMX19_02861at 105.670 kb on + strand, within MPMX19_02861at 105.670 kb on + strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.671 kb on - strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.916 kb on + strand, within MPMX19_02861at 105.917 kb on - strand, within MPMX19_02861at 105.917 kb on - strand, within MPMX19_02861at 105.921 kb on + strand, within MPMX19_02861at 105.922 kb on - strand, within MPMX19_02861at 105.961 kb on + strand, within MPMX19_02861at 105.962 kb on - strand, within MPMX19_02861at 106.363 kb on + strand, within MPMX19_02862at 106.363 kb on + strand, within MPMX19_02862at 106.363 kb on + strand, within MPMX19_02862at 106.364 kb on - strand, within MPMX19_02862at 106.364 kb on - strand, within MPMX19_02862at 106.364 kb on - strand, within MPMX19_02862at 106.364 kb on - strand, within MPMX19_02862at 106.364 kb on - strand, within MPMX19_02862at 106.364 kb on - strand, within MPMX19_02862at 106.368 kb on + strand, within MPMX19_02862at 106.368 kb on + strand, within MPMX19_02862at 106.368 kb on + strand, within MPMX19_02862at 106.368 kb on + strand, within MPMX19_02862at 106.368 kb on + strand, within MPMX19_02862at 106.368 kb on + strand, within MPMX19_02862at 106.368 kb on + strand, within MPMX19_02862at 106.369 kb on - strand, within MPMX19_02862at 106.369 kb on - strand, within MPMX19_02862at 106.369 kb on - strand, within MPMX19_02862at 106.369 kb on - strand, within MPMX19_02862at 106.369 kb on - strand, within MPMX19_02862at 106.369 kb on - strand, within MPMX19_02862at 106.568 kb on + strandat 106.568 kb on + strandat 106.568 kb on + strandat 106.568 kb on + strandat 106.568 kb on + strandat 106.568 kb on + strandat 106.569 kb on - strandat 106.569 kb on - strandat 106.569 kb on - strandat 106.569 kb on - strandat 106.569 kb on - strandat 106.569 kb on - strandat 106.711 kb on - strandat 106.870 kb on + strandat 106.871 kb on - strandat 106.882 kb on - strandat 107.386 kb on + strand, within MPMX19_02863at 107.386 kb on + strand, within MPMX19_02863at 107.386 kb on + strand, within MPMX19_02863at 107.386 kb on + strand, within MPMX19_02863at 107.386 kb on + strand, within MPMX19_02863at 107.386 kb on + strand, within MPMX19_02863at 107.386 kb on + strand, within MPMX19_02863at 107.386 kb on + strand, within MPMX19_02863at 107.386 kb on + strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.387 kb on - strand, within MPMX19_02863at 107.416 kb on + strand, within MPMX19_02863at 107.416 kb on + strand, within MPMX19_02863at 107.417 kb on - strand, within MPMX19_02863at 107.417 kb on - strand, within MPMX19_02863at 107.417 kb on - strand, within MPMX19_02863at 107.417 kb on - strand, within MPMX19_02863

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
105,275 - +0.5
105,338 + -0.5
105,338 + +0.2
105,338 + +0.1
105,410 - -0.8
105,479 + MPMX19_02861 0.13 -0.8
105,479 + MPMX19_02861 0.13 -0.1
105,479 + MPMX19_02861 0.13 -1.9
105,479 + MPMX19_02861 0.13 -0.9
105,479 + MPMX19_02861 0.13 +0.4
105,479 + MPMX19_02861 0.13 -0.4
105,480 - MPMX19_02861 0.13 -0.1
105,480 - MPMX19_02861 0.13 -0.8
105,480 - MPMX19_02861 0.13 -1.2
105,480 - MPMX19_02861 0.13 -0.6
105,480 - MPMX19_02861 0.13 -1.3
105,480 - MPMX19_02861 0.13 +1.0
105,631 + MPMX19_02861 0.36 -0.8
105,631 + MPMX19_02861 0.36 -0.8
105,631 + MPMX19_02861 0.36 -1.1
105,631 + MPMX19_02861 0.36 -1.8
105,631 + MPMX19_02861 0.36 +0.9
105,632 - MPMX19_02861 0.36 -2.3
105,632 - MPMX19_02861 0.36 +0.4
105,632 - MPMX19_02861 0.36 +0.4
105,632 - MPMX19_02861 0.36 -2.5
105,632 - MPMX19_02861 0.36 -1.0
105,632 - MPMX19_02861 0.36 +1.3
105,632 - MPMX19_02861 0.36 -0.8
105,632 - MPMX19_02861 0.36 -0.5
105,658 + MPMX19_02861 0.39 -0.8
105,658 + MPMX19_02861 0.39 +0.7
105,658 + MPMX19_02861 0.39 -2.0
105,658 + MPMX19_02861 0.39 -0.6
105,659 - MPMX19_02861 0.40 -0.2
105,659 - MPMX19_02861 0.40 +0.9
105,659 - MPMX19_02861 0.40 -0.3
105,659 - MPMX19_02861 0.40 -0.8
105,670 + MPMX19_02861 0.41 -0.6
105,670 + MPMX19_02861 0.41 -1.3
105,671 - MPMX19_02861 0.41 +0.3
105,671 - MPMX19_02861 0.41 -1.1
105,671 - MPMX19_02861 0.41 +0.7
105,671 - MPMX19_02861 0.41 +0.2
105,671 - MPMX19_02861 0.41 +0.9
105,916 + MPMX19_02861 0.77 -1.3
105,916 + MPMX19_02861 0.77 -1.6
105,916 + MPMX19_02861 0.77 -1.3
105,916 + MPMX19_02861 0.77 +0.0
105,916 + MPMX19_02861 0.77 +0.2
105,917 - MPMX19_02861 0.77 -1.1
105,917 - MPMX19_02861 0.77 +0.7
105,921 + MPMX19_02861 0.78 +0.7
105,922 - MPMX19_02861 0.78 +0.4
105,961 + MPMX19_02861 0.84 +1.3
105,962 - MPMX19_02861 0.84 -2.3
106,363 + MPMX19_02862 0.59 -0.3
106,363 + MPMX19_02862 0.59 +0.0
106,363 + MPMX19_02862 0.59 -0.8
106,364 - MPMX19_02862 0.59 +0.7
106,364 - MPMX19_02862 0.59 -1.4
106,364 - MPMX19_02862 0.59 -1.3
106,364 - MPMX19_02862 0.59 +0.5
106,364 - MPMX19_02862 0.59 -1.1
106,364 - MPMX19_02862 0.59 -0.8
106,368 + MPMX19_02862 0.60 -1.4
106,368 + MPMX19_02862 0.60 -0.8
106,368 + MPMX19_02862 0.60 -1.0
106,368 + MPMX19_02862 0.60 +0.4
106,368 + MPMX19_02862 0.60 -0.4
106,368 + MPMX19_02862 0.60 -1.8
106,368 + MPMX19_02862 0.60 -0.4
106,369 - MPMX19_02862 0.61 -1.1
106,369 - MPMX19_02862 0.61 +0.1
106,369 - MPMX19_02862 0.61 -1.6
106,369 - MPMX19_02862 0.61 -1.1
106,369 - MPMX19_02862 0.61 -0.7
106,369 - MPMX19_02862 0.61 +1.7
106,568 + +1.7
106,568 + -1.6
106,568 + -1.8
106,568 + -0.6
106,568 + -2.3
106,568 + -1.7
106,569 - -1.1
106,569 - -0.5
106,569 - -1.3
106,569 - +0.6
106,569 - +0.5
106,569 - +0.6
106,711 - -0.7
106,870 + -0.3
106,871 - -0.4
106,882 - -0.6
107,386 + MPMX19_02863 0.20 -1.4
107,386 + MPMX19_02863 0.20 +0.2
107,386 + MPMX19_02863 0.20 -0.5
107,386 + MPMX19_02863 0.20 +0.0
107,386 + MPMX19_02863 0.20 -0.4
107,386 + MPMX19_02863 0.20 -2.0
107,386 + MPMX19_02863 0.20 -1.4
107,386 + MPMX19_02863 0.20 -0.3
107,386 + MPMX19_02863 0.20 +1.0
107,387 - MPMX19_02863 0.20 +0.2
107,387 - MPMX19_02863 0.20 +0.2
107,387 - MPMX19_02863 0.20 -0.3
107,387 - MPMX19_02863 0.20 -1.3
107,387 - MPMX19_02863 0.20 +0.0
107,387 - MPMX19_02863 0.20 +0.5
107,387 - MPMX19_02863 0.20 -0.4
107,387 - MPMX19_02863 0.20 +1.0
107,387 - MPMX19_02863 0.20 -0.5
107,387 - MPMX19_02863 0.20 +2.2
107,387 - MPMX19_02863 0.20 -0.6
107,387 - MPMX19_02863 0.20 -0.4
107,387 - MPMX19_02863 0.20 -1.6
107,387 - MPMX19_02863 0.20 -0.3
107,416 + MPMX19_02863 0.21 -0.2
107,416 + MPMX19_02863 0.21 -0.9
107,417 - MPMX19_02863 0.21 -1.0
107,417 - MPMX19_02863 0.21 +0.5
107,417 - MPMX19_02863 0.21 +1.2
107,417 - MPMX19_02863 0.21 -1.1

Or see this region's nucleotide sequence