Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02856

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02855 and MPMX19_02856 are separated by 241 nucleotidesMPMX19_02856 and MPMX19_02857 are separated by 60 nucleotides MPMX19_02855: MPMX19_02855 - hypothetical protein, at 98,519 to 99,301 _02855 MPMX19_02856: MPMX19_02856 - hypothetical protein, at 99,543 to 101,222 _02856 MPMX19_02857: MPMX19_02857 - HTH-type transcriptional regulator PgrR, at 101,283 to 102,245 _02857 Position (kb) 99 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 98.574 kb on + strandat 98.574 kb on + strandat 98.574 kb on + strandat 98.574 kb on + strandat 98.574 kb on + strandat 98.574 kb on + strandat 98.575 kb on - strandat 98.614 kb on - strand, within MPMX19_02855at 98.877 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.950 kb on - strand, within MPMX19_02855at 98.950 kb on - strand, within MPMX19_02855at 98.950 kb on - strand, within MPMX19_02855at 98.950 kb on - strand, within MPMX19_02855at 98.970 kb on + strand, within MPMX19_02855at 98.970 kb on + strand, within MPMX19_02855at 98.971 kb on - strand, within MPMX19_02855at 99.100 kb on - strand, within MPMX19_02855at 99.396 kb on + strandat 99.396 kb on + strandat 99.396 kb on + strandat 99.396 kb on + strandat 99.397 kb on - strandat 99.397 kb on - strandat 99.397 kb on - strandat 99.397 kb on - strandat 99.476 kb on - strandat 99.476 kb on - strandat 99.476 kb on - strandat 99.513 kb on + strandat 99.514 kb on - strandat 99.514 kb on - strandat 99.514 kb on - strandat 99.603 kb on + strandat 99.610 kb on + strandat 99.611 kb on - strandat 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.895 kb on + strand, within MPMX19_02856at 99.895 kb on + strand, within MPMX19_02856at 99.895 kb on + strand, within MPMX19_02856at 99.895 kb on + strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.922 kb on + strand, within MPMX19_02856at 99.922 kb on + strand, within MPMX19_02856at 99.931 kb on + strand, within MPMX19_02856at 99.931 kb on + strand, within MPMX19_02856at 99.931 kb on + strand, within MPMX19_02856at 99.932 kb on - strand, within MPMX19_02856at 99.932 kb on - strand, within MPMX19_02856at 99.991 kb on + strand, within MPMX19_02856at 99.991 kb on + strand, within MPMX19_02856at 99.992 kb on - strand, within MPMX19_02856at 99.992 kb on - strand, within MPMX19_02856at 99.992 kb on - strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.085 kb on - strand, within MPMX19_02856at 100.321 kb on + strand, within MPMX19_02856at 100.321 kb on + strand, within MPMX19_02856at 100.322 kb on - strand, within MPMX19_02856at 100.322 kb on - strand, within MPMX19_02856at 100.468 kb on + strand, within MPMX19_02856at 100.469 kb on - strand, within MPMX19_02856at 100.469 kb on - strand, within MPMX19_02856at 100.612 kb on + strand, within MPMX19_02856at 100.613 kb on - strand, within MPMX19_02856at 100.666 kb on + strand, within MPMX19_02856at 100.667 kb on - strand, within MPMX19_02856at 100.667 kb on - strand, within MPMX19_02856at 100.667 kb on - strand, within MPMX19_02856at 100.667 kb on - strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.885 kb on + strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.886 kb on - strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.921 kb on + strand, within MPMX19_02856at 100.922 kb on - strand, within MPMX19_02856at 101.477 kb on + strand, within MPMX19_02857at 101.477 kb on + strand, within MPMX19_02857at 101.477 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.623 kb on + strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.624 kb on - strand, within MPMX19_02857at 101.784 kb on + strand, within MPMX19_02857at 101.784 kb on + strand, within MPMX19_02857at 101.784 kb on + strand, within MPMX19_02857at 101.785 kb on - strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.911 kb on + strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.912 kb on - strand, within MPMX19_02857at 101.936 kb on + strand, within MPMX19_02857at 101.936 kb on + strand, within MPMX19_02857at 101.936 kb on + strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.937 kb on - strand, within MPMX19_02857at 101.971 kb on + strand, within MPMX19_02857at 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.217 kb on + strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.218 kb on - strandat 102.218 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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98,574 + -0.3
98,574 + -2.8
98,574 + -0.1
98,574 + -0.1
98,574 + +0.7
98,574 + -1.1
98,575 - -0.1
98,614 - MPMX19_02855 0.12 -0.4
98,877 + MPMX19_02855 0.46 -0.3
98,949 + MPMX19_02855 0.55 -1.1
98,949 + MPMX19_02855 0.55 -0.6
98,949 + MPMX19_02855 0.55 -2.3
98,949 + MPMX19_02855 0.55 -0.6
98,949 + MPMX19_02855 0.55 -0.4
98,949 + MPMX19_02855 0.55 -2.3
98,949 + MPMX19_02855 0.55 +0.0
98,949 + MPMX19_02855 0.55 -0.5
98,949 + MPMX19_02855 0.55 -1.7
98,949 + MPMX19_02855 0.55 +0.5
98,950 - MPMX19_02855 0.55 -1.4
98,950 - MPMX19_02855 0.55 -0.3
98,950 - MPMX19_02855 0.55 -2.5
98,950 - MPMX19_02855 0.55 -1.3
98,970 + MPMX19_02855 0.58 +0.5
98,970 + MPMX19_02855 0.58 +0.2
98,971 - MPMX19_02855 0.58 -0.6
99,100 - MPMX19_02855 0.74 -0.4
99,396 + -0.5
99,396 + -0.8
99,396 + -0.7
99,396 + -1.0
99,397 - -1.4
99,397 - -1.7
99,397 - -0.6
99,397 - +3.0
99,476 - -0.5
99,476 - -1.3
99,476 - -0.8
99,513 + -2.8
99,514 - -0.8
99,514 - +0.0
99,514 - -0.4
99,603 + -3.1
99,610 + +0.0
99,611 - -1.3
99,758 - MPMX19_02856 0.13 +0.2
99,758 - MPMX19_02856 0.13 -0.6
99,758 - MPMX19_02856 0.13 -0.3
99,758 - MPMX19_02856 0.13 +1.2
99,758 - MPMX19_02856 0.13 -2.0
99,758 - MPMX19_02856 0.13 -1.3
99,895 + MPMX19_02856 0.21 -1.3
99,895 + MPMX19_02856 0.21 -0.4
99,895 + MPMX19_02856 0.21 +0.0
99,895 + MPMX19_02856 0.21 +0.4
99,896 - MPMX19_02856 0.21 +0.2
99,896 - MPMX19_02856 0.21 +0.2
99,896 - MPMX19_02856 0.21 -0.6
99,896 - MPMX19_02856 0.21 +0.7
99,896 - MPMX19_02856 0.21 -1.3
99,896 - MPMX19_02856 0.21 -0.7
99,922 + MPMX19_02856 0.23 -1.0
99,922 + MPMX19_02856 0.23 -0.5
99,931 + MPMX19_02856 0.23 -0.8
99,931 + MPMX19_02856 0.23 -1.4
99,931 + MPMX19_02856 0.23 -2.0
99,932 - MPMX19_02856 0.23 +0.2
99,932 - MPMX19_02856 0.23 -1.5
99,991 + MPMX19_02856 0.27 -0.5
99,991 + MPMX19_02856 0.27 -0.6
99,992 - MPMX19_02856 0.27 -0.8
99,992 - MPMX19_02856 0.27 -0.1
99,992 - MPMX19_02856 0.27 -0.2
99,997 + MPMX19_02856 0.27 +0.1
99,997 + MPMX19_02856 0.27 -0.1
99,997 + MPMX19_02856 0.27 -0.3
99,997 + MPMX19_02856 0.27 -0.8
99,997 + MPMX19_02856 0.27 -0.3
99,997 + MPMX19_02856 0.27 +0.2
99,997 + MPMX19_02856 0.27 -0.4
99,997 + MPMX19_02856 0.27 -0.0
99,997 + MPMX19_02856 0.27 +0.1
99,997 + MPMX19_02856 0.27 +1.2
99,997 + MPMX19_02856 0.27 -1.3
99,998 - MPMX19_02856 0.27 -1.3
99,998 - MPMX19_02856 0.27 -0.1
99,998 - MPMX19_02856 0.27 -0.3
99,998 - MPMX19_02856 0.27 -0.7
99,998 - MPMX19_02856 0.27 -0.6
99,998 - MPMX19_02856 0.27 -0.9
99,998 - MPMX19_02856 0.27 +1.0
99,998 - MPMX19_02856 0.27 -0.7
99,998 - MPMX19_02856 0.27 -0.3
100,048 + MPMX19_02856 0.30 -0.8
100,048 + MPMX19_02856 0.30 -0.1
100,048 + MPMX19_02856 0.30 -0.8
100,048 + MPMX19_02856 0.30 -0.1
100,048 + MPMX19_02856 0.30 -2.5
100,048 + MPMX19_02856 0.30 -1.7
100,048 + MPMX19_02856 0.30 +0.2
100,048 + MPMX19_02856 0.30 +1.3
100,048 + MPMX19_02856 0.30 -0.1
100,048 + MPMX19_02856 0.30 -0.3
100,048 + MPMX19_02856 0.30 +0.6
100,049 - MPMX19_02856 0.30 +1.3
100,049 - MPMX19_02856 0.30 -0.5
100,049 - MPMX19_02856 0.30 -0.6
100,049 - MPMX19_02856 0.30 -0.6
100,049 - MPMX19_02856 0.30 +0.8
100,049 - MPMX19_02856 0.30 -1.7
100,049 - MPMX19_02856 0.30 +0.0
100,049 - MPMX19_02856 0.30 +0.3
100,049 - MPMX19_02856 0.30 -1.0
100,085 - MPMX19_02856 0.32 -1.4
100,321 + MPMX19_02856 0.46 -0.4
100,321 + MPMX19_02856 0.46 +0.7
100,322 - MPMX19_02856 0.46 +0.5
100,322 - MPMX19_02856 0.46 -1.0
100,468 + MPMX19_02856 0.55 -0.4
100,469 - MPMX19_02856 0.55 -0.3
100,469 - MPMX19_02856 0.55 -1.8
100,612 + MPMX19_02856 0.64 +0.3
100,613 - MPMX19_02856 0.64 +0.1
100,666 + MPMX19_02856 0.67 -1.0
100,667 - MPMX19_02856 0.67 -1.3
100,667 - MPMX19_02856 0.67 -1.9
100,667 - MPMX19_02856 0.67 -0.7
100,667 - MPMX19_02856 0.67 -0.3
100,885 + MPMX19_02856 0.80 -0.7
100,885 + MPMX19_02856 0.80 -1.3
100,885 + MPMX19_02856 0.80 -2.3
100,885 + MPMX19_02856 0.80 +2.5
100,885 + MPMX19_02856 0.80 +1.2
100,886 - MPMX19_02856 0.80 -1.4
100,886 - MPMX19_02856 0.80 -0.1
100,886 - MPMX19_02856 0.80 -1.6
100,886 - MPMX19_02856 0.80 +0.3
100,886 - MPMX19_02856 0.80 +0.5
100,886 - MPMX19_02856 0.80 -0.3
100,886 - MPMX19_02856 0.80 -0.4
100,886 - MPMX19_02856 0.80 -2.9
100,886 - MPMX19_02856 0.80 +1.4
100,886 - MPMX19_02856 0.80 +0.4
100,921 + MPMX19_02856 0.82 -0.4
100,921 + MPMX19_02856 0.82 +0.4
100,921 + MPMX19_02856 0.82 -0.1
100,921 + MPMX19_02856 0.82 +0.6
100,921 + MPMX19_02856 0.82 +0.2
100,921 + MPMX19_02856 0.82 -1.2
100,922 - MPMX19_02856 0.82 -0.9
101,477 + MPMX19_02857 0.20 +1.3
101,477 + MPMX19_02857 0.20 +0.7
101,477 + MPMX19_02857 0.20 +0.7
101,623 + MPMX19_02857 0.35 +0.0
101,623 + MPMX19_02857 0.35 -1.5
101,623 + MPMX19_02857 0.35 -0.1
101,623 + MPMX19_02857 0.35 +1.0
101,623 + MPMX19_02857 0.35 -0.8
101,623 + MPMX19_02857 0.35 +2.7
101,623 + MPMX19_02857 0.35 +0.3
101,623 + MPMX19_02857 0.35 -1.3
101,623 + MPMX19_02857 0.35 -0.1
101,623 + MPMX19_02857 0.35 -0.4
101,624 - MPMX19_02857 0.35 -2.5
101,624 - MPMX19_02857 0.35 -1.8
101,624 - MPMX19_02857 0.35 +0.2
101,624 - MPMX19_02857 0.35 -1.4
101,624 - MPMX19_02857 0.35 -1.3
101,624 - MPMX19_02857 0.35 -1.4
101,624 - MPMX19_02857 0.35 -0.6
101,624 - MPMX19_02857 0.35 -0.7
101,784 + MPMX19_02857 0.52 -0.6
101,784 + MPMX19_02857 0.52 -0.1
101,784 + MPMX19_02857 0.52 -0.1
101,785 - MPMX19_02857 0.52 -0.2
101,911 + MPMX19_02857 0.65 -0.4
101,911 + MPMX19_02857 0.65 +0.5
101,911 + MPMX19_02857 0.65 -0.1
101,911 + MPMX19_02857 0.65 +0.5
101,911 + MPMX19_02857 0.65 -0.4
101,911 + MPMX19_02857 0.65 +0.5
101,912 - MPMX19_02857 0.65 -1.4
101,912 - MPMX19_02857 0.65 -0.2
101,912 - MPMX19_02857 0.65 -0.2
101,912 - MPMX19_02857 0.65 -0.1
101,912 - MPMX19_02857 0.65 -0.3
101,912 - MPMX19_02857 0.65 -0.0
101,912 - MPMX19_02857 0.65 -0.6
101,936 + MPMX19_02857 0.68 +0.2
101,936 + MPMX19_02857 0.68 +0.5
101,936 + MPMX19_02857 0.68 -0.4
101,937 - MPMX19_02857 0.68 -1.1
101,937 - MPMX19_02857 0.68 +0.7
101,937 - MPMX19_02857 0.68 +1.6
101,937 - MPMX19_02857 0.68 -1.6
101,937 - MPMX19_02857 0.68 +0.0
101,937 - MPMX19_02857 0.68 -1.6
101,971 + MPMX19_02857 0.71 +1.2
102,217 + -0.1
102,217 + +0.4
102,217 + -0.1
102,217 + -0.2
102,217 + -2.3
102,217 + -0.8
102,218 - -0.3
102,218 - -0.4
102,218 - -0.7
102,218 - -0.2
102,218 - -1.1

Or see this region's nucleotide sequence