Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02855

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02854 and MPMX19_02855 are separated by 3 nucleotidesMPMX19_02855 and MPMX19_02856 are separated by 241 nucleotides MPMX19_02854: MPMX19_02854 - Gluconate 2-dehydrogenase flavoprotein, at 96,743 to 98,515 _02854 MPMX19_02855: MPMX19_02855 - hypothetical protein, at 98,519 to 99,301 _02855 MPMX19_02856: MPMX19_02856 - hypothetical protein, at 99,543 to 101,222 _02856 Position (kb) 98 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 97.524 kb on + strand, within MPMX19_02854at 97.525 kb on - strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.635 kb on + strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.636 kb on - strand, within MPMX19_02854at 97.768 kb on - strand, within MPMX19_02854at 97.768 kb on - strand, within MPMX19_02854at 97.768 kb on - strand, within MPMX19_02854at 97.768 kb on - strand, within MPMX19_02854at 97.782 kb on + strand, within MPMX19_02854at 97.782 kb on + strand, within MPMX19_02854at 97.782 kb on + strand, within MPMX19_02854at 97.783 kb on - strand, within MPMX19_02854at 97.783 kb on - strand, within MPMX19_02854at 97.783 kb on - strand, within MPMX19_02854at 97.783 kb on - strand, within MPMX19_02854at 97.842 kb on + strand, within MPMX19_02854at 97.842 kb on + strand, within MPMX19_02854at 97.842 kb on + strand, within MPMX19_02854at 97.842 kb on + strand, within MPMX19_02854at 97.843 kb on - strand, within MPMX19_02854at 97.843 kb on - strand, within MPMX19_02854at 97.843 kb on - strand, within MPMX19_02854at 97.884 kb on + strand, within MPMX19_02854at 97.884 kb on + strand, within MPMX19_02854at 97.884 kb on + strand, within MPMX19_02854at 97.884 kb on + strand, within MPMX19_02854at 97.884 kb on + strand, within MPMX19_02854at 97.884 kb on + strand, within MPMX19_02854at 97.884 kb on + strand, within MPMX19_02854at 97.884 kb on + strand, within MPMX19_02854at 97.884 kb on + strand, within MPMX19_02854at 97.885 kb on - strand, within MPMX19_02854at 97.885 kb on - strand, within MPMX19_02854at 97.885 kb on - strand, within MPMX19_02854at 97.885 kb on - strand, within MPMX19_02854at 97.885 kb on - strand, within MPMX19_02854at 97.885 kb on - strand, within MPMX19_02854at 97.885 kb on - strand, within MPMX19_02854at 97.885 kb on - strand, within MPMX19_02854at 97.885 kb on - strand, within MPMX19_02854at 97.926 kb on + strand, within MPMX19_02854at 97.927 kb on - strand, within MPMX19_02854at 98.043 kb on + strand, within MPMX19_02854at 98.043 kb on + strand, within MPMX19_02854at 98.043 kb on + strand, within MPMX19_02854at 98.058 kb on + strand, within MPMX19_02854at 98.058 kb on + strand, within MPMX19_02854at 98.059 kb on - strand, within MPMX19_02854at 98.059 kb on - strand, within MPMX19_02854at 98.059 kb on - strand, within MPMX19_02854at 98.059 kb on - strand, within MPMX19_02854at 98.061 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.079 kb on + strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.080 kb on - strand, within MPMX19_02854at 98.118 kb on - strand, within MPMX19_02854at 98.340 kb on + strandat 98.341 kb on - strandat 98.341 kb on - strandat 98.341 kb on - strandat 98.341 kb on - strandat 98.361 kb on + strandat 98.361 kb on + strandat 98.574 kb on + strandat 98.574 kb on + strandat 98.574 kb on + strandat 98.574 kb on + strandat 98.574 kb on + strandat 98.574 kb on + strandat 98.575 kb on - strandat 98.614 kb on - strand, within MPMX19_02855at 98.877 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.949 kb on + strand, within MPMX19_02855at 98.950 kb on - strand, within MPMX19_02855at 98.950 kb on - strand, within MPMX19_02855at 98.950 kb on - strand, within MPMX19_02855at 98.950 kb on - strand, within MPMX19_02855at 98.970 kb on + strand, within MPMX19_02855at 98.970 kb on + strand, within MPMX19_02855at 98.971 kb on - strand, within MPMX19_02855at 99.100 kb on - strand, within MPMX19_02855at 99.396 kb on + strandat 99.396 kb on + strandat 99.396 kb on + strandat 99.396 kb on + strandat 99.397 kb on - strandat 99.397 kb on - strandat 99.397 kb on - strandat 99.397 kb on - strandat 99.476 kb on - strandat 99.476 kb on - strandat 99.476 kb on - strandat 99.513 kb on + strandat 99.514 kb on - strandat 99.514 kb on - strandat 99.514 kb on - strandat 99.603 kb on + strandat 99.610 kb on + strandat 99.611 kb on - strandat 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.758 kb on - strand, within MPMX19_02856at 99.895 kb on + strand, within MPMX19_02856at 99.895 kb on + strand, within MPMX19_02856at 99.895 kb on + strand, within MPMX19_02856at 99.895 kb on + strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.896 kb on - strand, within MPMX19_02856at 99.922 kb on + strand, within MPMX19_02856at 99.922 kb on + strand, within MPMX19_02856at 99.931 kb on + strand, within MPMX19_02856at 99.931 kb on + strand, within MPMX19_02856at 99.931 kb on + strand, within MPMX19_02856at 99.932 kb on - strand, within MPMX19_02856at 99.932 kb on - strand, within MPMX19_02856at 99.991 kb on + strand, within MPMX19_02856at 99.991 kb on + strand, within MPMX19_02856at 99.992 kb on - strand, within MPMX19_02856at 99.992 kb on - strand, within MPMX19_02856at 99.992 kb on - strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.997 kb on + strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 99.998 kb on - strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.048 kb on + strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.049 kb on - strand, within MPMX19_02856at 100.085 kb on - strand, within MPMX19_02856

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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97,524 + MPMX19_02854 0.44 +1.7
97,525 - MPMX19_02854 0.44 -2.3
97,635 + MPMX19_02854 0.50 -0.3
97,635 + MPMX19_02854 0.50 -0.6
97,635 + MPMX19_02854 0.50 +0.3
97,635 + MPMX19_02854 0.50 -1.8
97,635 + MPMX19_02854 0.50 -1.5
97,635 + MPMX19_02854 0.50 -0.3
97,635 + MPMX19_02854 0.50 +0.7
97,635 + MPMX19_02854 0.50 -1.7
97,635 + MPMX19_02854 0.50 -1.3
97,635 + MPMX19_02854 0.50 -0.4
97,635 + MPMX19_02854 0.50 -1.6
97,635 + MPMX19_02854 0.50 -0.7
97,635 + MPMX19_02854 0.50 -0.1
97,635 + MPMX19_02854 0.50 -2.5
97,636 - MPMX19_02854 0.50 -1.6
97,636 - MPMX19_02854 0.50 +0.4
97,636 - MPMX19_02854 0.50 +0.4
97,636 - MPMX19_02854 0.50 -0.9
97,636 - MPMX19_02854 0.50 -0.8
97,636 - MPMX19_02854 0.50 -2.3
97,636 - MPMX19_02854 0.50 -1.7
97,636 - MPMX19_02854 0.50 -0.9
97,768 - MPMX19_02854 0.58 -1.1
97,768 - MPMX19_02854 0.58 +0.4
97,768 - MPMX19_02854 0.58 -0.5
97,768 - MPMX19_02854 0.58 +1.7
97,782 + MPMX19_02854 0.59 -1.6
97,782 + MPMX19_02854 0.59 -0.4
97,782 + MPMX19_02854 0.59 +0.9
97,783 - MPMX19_02854 0.59 +0.2
97,783 - MPMX19_02854 0.59 +0.2
97,783 - MPMX19_02854 0.59 -0.1
97,783 - MPMX19_02854 0.59 -1.1
97,842 + MPMX19_02854 0.62 +1.0
97,842 + MPMX19_02854 0.62 -0.7
97,842 + MPMX19_02854 0.62 +0.2
97,842 + MPMX19_02854 0.62 +0.2
97,843 - MPMX19_02854 0.62 -0.3
97,843 - MPMX19_02854 0.62 +1.2
97,843 - MPMX19_02854 0.62 +0.4
97,884 + MPMX19_02854 0.64 -0.7
97,884 + MPMX19_02854 0.64 -0.4
97,884 + MPMX19_02854 0.64 -0.5
97,884 + MPMX19_02854 0.64 -0.7
97,884 + MPMX19_02854 0.64 -0.1
97,884 + MPMX19_02854 0.64 +0.0
97,884 + MPMX19_02854 0.64 -0.3
97,884 + MPMX19_02854 0.64 -0.3
97,884 + MPMX19_02854 0.64 -0.6
97,885 - MPMX19_02854 0.64 -0.7
97,885 - MPMX19_02854 0.64 +0.7
97,885 - MPMX19_02854 0.64 -1.7
97,885 - MPMX19_02854 0.64 +1.2
97,885 - MPMX19_02854 0.64 +0.2
97,885 - MPMX19_02854 0.64 -1.6
97,885 - MPMX19_02854 0.64 +0.1
97,885 - MPMX19_02854 0.64 -0.7
97,885 - MPMX19_02854 0.64 -0.7
97,926 + MPMX19_02854 0.67 +0.7
97,927 - MPMX19_02854 0.67 +0.0
98,043 + MPMX19_02854 0.73 -0.6
98,043 + MPMX19_02854 0.73 +0.7
98,043 + MPMX19_02854 0.73 -0.8
98,058 + MPMX19_02854 0.74 -0.8
98,058 + MPMX19_02854 0.74 +0.3
98,059 - MPMX19_02854 0.74 -0.7
98,059 - MPMX19_02854 0.74 -1.0
98,059 - MPMX19_02854 0.74 -0.4
98,059 - MPMX19_02854 0.74 +0.2
98,061 + MPMX19_02854 0.74 -0.0
98,079 + MPMX19_02854 0.75 -0.2
98,079 + MPMX19_02854 0.75 -1.1
98,079 + MPMX19_02854 0.75 -0.3
98,079 + MPMX19_02854 0.75 -2.7
98,079 + MPMX19_02854 0.75 +0.0
98,079 + MPMX19_02854 0.75 +0.1
98,079 + MPMX19_02854 0.75 +1.5
98,079 + MPMX19_02854 0.75 +1.2
98,079 + MPMX19_02854 0.75 -1.5
98,079 + MPMX19_02854 0.75 +0.3
98,079 + MPMX19_02854 0.75 -0.3
98,079 + MPMX19_02854 0.75 -0.3
98,080 - MPMX19_02854 0.75 -0.3
98,080 - MPMX19_02854 0.75 +0.5
98,080 - MPMX19_02854 0.75 -0.4
98,080 - MPMX19_02854 0.75 -1.3
98,080 - MPMX19_02854 0.75 -0.4
98,080 - MPMX19_02854 0.75 -1.2
98,080 - MPMX19_02854 0.75 -0.9
98,080 - MPMX19_02854 0.75 +0.6
98,080 - MPMX19_02854 0.75 +0.2
98,080 - MPMX19_02854 0.75 -0.6
98,080 - MPMX19_02854 0.75 -0.8
98,080 - MPMX19_02854 0.75 -0.3
98,080 - MPMX19_02854 0.75 -0.8
98,118 - MPMX19_02854 0.78 +0.7
98,340 + +1.0
98,341 - -0.3
98,341 - +0.5
98,341 - -1.1
98,341 - -0.7
98,361 + -0.4
98,361 + -1.1
98,574 + -0.3
98,574 + -2.8
98,574 + -0.1
98,574 + -0.1
98,574 + +0.7
98,574 + -1.1
98,575 - -0.1
98,614 - MPMX19_02855 0.12 -0.4
98,877 + MPMX19_02855 0.46 -0.3
98,949 + MPMX19_02855 0.55 -1.1
98,949 + MPMX19_02855 0.55 -0.6
98,949 + MPMX19_02855 0.55 -2.3
98,949 + MPMX19_02855 0.55 -0.6
98,949 + MPMX19_02855 0.55 -0.4
98,949 + MPMX19_02855 0.55 -2.3
98,949 + MPMX19_02855 0.55 +0.0
98,949 + MPMX19_02855 0.55 -0.5
98,949 + MPMX19_02855 0.55 -1.7
98,949 + MPMX19_02855 0.55 +0.5
98,950 - MPMX19_02855 0.55 -1.4
98,950 - MPMX19_02855 0.55 -0.3
98,950 - MPMX19_02855 0.55 -2.5
98,950 - MPMX19_02855 0.55 -1.3
98,970 + MPMX19_02855 0.58 +0.5
98,970 + MPMX19_02855 0.58 +0.2
98,971 - MPMX19_02855 0.58 -0.6
99,100 - MPMX19_02855 0.74 -0.4
99,396 + -0.5
99,396 + -0.8
99,396 + -0.7
99,396 + -1.0
99,397 - -1.4
99,397 - -1.7
99,397 - -0.6
99,397 - +3.0
99,476 - -0.5
99,476 - -1.3
99,476 - -0.8
99,513 + -2.8
99,514 - -0.8
99,514 - +0.0
99,514 - -0.4
99,603 + -3.1
99,610 + +0.0
99,611 - -1.3
99,758 - MPMX19_02856 0.13 +0.2
99,758 - MPMX19_02856 0.13 -0.6
99,758 - MPMX19_02856 0.13 -0.3
99,758 - MPMX19_02856 0.13 +1.2
99,758 - MPMX19_02856 0.13 -2.0
99,758 - MPMX19_02856 0.13 -1.3
99,895 + MPMX19_02856 0.21 -1.3
99,895 + MPMX19_02856 0.21 -0.4
99,895 + MPMX19_02856 0.21 +0.0
99,895 + MPMX19_02856 0.21 +0.4
99,896 - MPMX19_02856 0.21 +0.2
99,896 - MPMX19_02856 0.21 +0.2
99,896 - MPMX19_02856 0.21 -0.6
99,896 - MPMX19_02856 0.21 +0.7
99,896 - MPMX19_02856 0.21 -1.3
99,896 - MPMX19_02856 0.21 -0.7
99,922 + MPMX19_02856 0.23 -1.0
99,922 + MPMX19_02856 0.23 -0.5
99,931 + MPMX19_02856 0.23 -0.8
99,931 + MPMX19_02856 0.23 -1.4
99,931 + MPMX19_02856 0.23 -2.0
99,932 - MPMX19_02856 0.23 +0.2
99,932 - MPMX19_02856 0.23 -1.5
99,991 + MPMX19_02856 0.27 -0.5
99,991 + MPMX19_02856 0.27 -0.6
99,992 - MPMX19_02856 0.27 -0.8
99,992 - MPMX19_02856 0.27 -0.1
99,992 - MPMX19_02856 0.27 -0.2
99,997 + MPMX19_02856 0.27 +0.1
99,997 + MPMX19_02856 0.27 -0.1
99,997 + MPMX19_02856 0.27 -0.3
99,997 + MPMX19_02856 0.27 -0.8
99,997 + MPMX19_02856 0.27 -0.3
99,997 + MPMX19_02856 0.27 +0.2
99,997 + MPMX19_02856 0.27 -0.4
99,997 + MPMX19_02856 0.27 -0.0
99,997 + MPMX19_02856 0.27 +0.1
99,997 + MPMX19_02856 0.27 +1.2
99,997 + MPMX19_02856 0.27 -1.3
99,998 - MPMX19_02856 0.27 -1.3
99,998 - MPMX19_02856 0.27 -0.1
99,998 - MPMX19_02856 0.27 -0.3
99,998 - MPMX19_02856 0.27 -0.7
99,998 - MPMX19_02856 0.27 -0.6
99,998 - MPMX19_02856 0.27 -0.9
99,998 - MPMX19_02856 0.27 +1.0
99,998 - MPMX19_02856 0.27 -0.7
99,998 - MPMX19_02856 0.27 -0.3
100,048 + MPMX19_02856 0.30 -0.8
100,048 + MPMX19_02856 0.30 -0.1
100,048 + MPMX19_02856 0.30 -0.8
100,048 + MPMX19_02856 0.30 -0.1
100,048 + MPMX19_02856 0.30 -2.5
100,048 + MPMX19_02856 0.30 -1.7
100,048 + MPMX19_02856 0.30 +0.2
100,048 + MPMX19_02856 0.30 +1.3
100,048 + MPMX19_02856 0.30 -0.1
100,048 + MPMX19_02856 0.30 -0.3
100,048 + MPMX19_02856 0.30 +0.6
100,049 - MPMX19_02856 0.30 +1.3
100,049 - MPMX19_02856 0.30 -0.5
100,049 - MPMX19_02856 0.30 -0.6
100,049 - MPMX19_02856 0.30 -0.6
100,049 - MPMX19_02856 0.30 +0.8
100,049 - MPMX19_02856 0.30 -1.7
100,049 - MPMX19_02856 0.30 +0.0
100,049 - MPMX19_02856 0.30 +0.3
100,049 - MPMX19_02856 0.30 -1.0
100,085 - MPMX19_02856 0.32 -1.4

Or see this region's nucleotide sequence