Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02821 and MPMX19_02822 are separated by 264 nucleotides MPMX19_02822 and MPMX19_02823 are separated by 323 nucleotides
MPMX19_02821: MPMX19_02821 - Sensor histidine kinase RcsC, at 58,400 to 61,618
_02821
MPMX19_02822: MPMX19_02822 - HTH-type transcriptional regulator ArgP, at 61,883 to 62,890
_02822
MPMX19_02823: MPMX19_02823 - N-formyl-4-amino-5-aminomethyl-2- methylpyrimidine deformylase, at 63,214 to 64,536
_02823
Position (kb) 61
62
63 Strain fitness (log2 ratio) -2
-1
0
1
2 at 61.344 kb on + strand at 61.344 kb on + strand at 61.344 kb on + strand at 61.344 kb on + strand at 61.345 kb on - strand at 61.345 kb on - strand at 61.345 kb on - strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.359 kb on + strand at 61.360 kb on - strand at 61.360 kb on - strand at 61.360 kb on - strand at 61.360 kb on - strand at 61.360 kb on - strand at 61.362 kb on + strand at 61.363 kb on - strand at 61.432 kb on - strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.548 kb on + strand at 61.549 kb on - strand at 61.549 kb on - strand at 61.549 kb on - strand at 61.549 kb on - strand at 61.549 kb on - strand at 61.817 kb on + strand at 61.817 kb on + strand at 61.817 kb on + strand at 61.818 kb on - strand at 61.818 kb on - strand at 61.869 kb on + strand at 61.869 kb on + strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.870 kb on - strand at 61.971 kb on + strand at 61.972 kb on - strand at 61.972 kb on - strand at 62.055 kb on + strand, within MPMX19_02822 at 62.056 kb on - strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.337 kb on + strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.338 kb on - strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.346 kb on + strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.347 kb on - strand, within MPMX19_02822 at 62.490 kb on + strand, within MPMX19_02822 at 62.490 kb on + strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.491 kb on - strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.646 kb on + strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.647 kb on - strand, within MPMX19_02822 at 62.950 kb on - strand at 62.950 kb on - strand at 62.950 kb on - strand at 63.016 kb on + strand at 63.044 kb on + strand at 63.091 kb on + strand at 63.091 kb on + strand at 63.091 kb on + strand at 63.092 kb on - strand at 63.102 kb on + strand at 63.103 kb on - strand at 63.210 kb on + strand at 63.210 kb on + strand at 63.211 kb on - strand at 63.225 kb on + strand at 63.225 kb on + strand at 63.225 kb on + strand at 63.226 kb on - strand at 63.490 kb on + strand, within MPMX19_02823 at 63.490 kb on + strand, within MPMX19_02823 at 63.491 kb on - strand, within MPMX19_02823 at 63.567 kb on + strand, within MPMX19_02823 at 63.568 kb on - strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.646 kb on + strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.647 kb on - strand, within MPMX19_02823 at 63.688 kb on + strand, within MPMX19_02823 at 63.688 kb on + strand, within MPMX19_02823 at 63.689 kb on - strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.745 kb on + strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823 at 63.746 kb on - strand, within MPMX19_02823
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 61,344 + -1.3 61,344 + +0.3 61,344 + +0.1 61,344 + -2.1 61,345 - -1.3 61,345 - -0.6 61,345 - -0.4 61,359 + +0.3 61,359 + -0.4 61,359 + -0.8 61,359 + +0.6 61,359 + +0.3 61,359 + +0.1 61,359 + -1.1 61,359 + +1.2 61,360 - +1.7 61,360 - +1.0 61,360 - -0.3 61,360 - -1.1 61,360 - -0.5 61,362 + -0.5 61,363 - -0.6 61,432 - -2.3 61,548 + +1.7 61,548 + -1.6 61,548 + -0.4 61,548 + -0.1 61,548 + +0.2 61,548 + +0.9 61,549 - +0.4 61,549 - -1.1 61,549 - -0.4 61,549 - -0.7 61,549 - -1.0 61,817 + -1.2 61,817 + -1.1 61,817 + -0.4 61,818 - -0.1 61,818 - -1.6 61,869 + +1.0 61,869 + -0.3 61,870 - +0.0 61,870 - -0.3 61,870 - -1.3 61,870 - +1.2 61,870 - +1.0 61,870 - -0.2 61,971 + -0.9 61,972 - -0.5 61,972 - +0.4 62,055 + MPMX19_02822 0.17 +1.0 62,056 - MPMX19_02822 0.17 -0.1 62,337 + MPMX19_02822 0.45 -1.7 62,337 + MPMX19_02822 0.45 -0.1 62,337 + MPMX19_02822 0.45 -1.4 62,338 - MPMX19_02822 0.45 -0.6 62,338 - MPMX19_02822 0.45 -2.1 62,338 - MPMX19_02822 0.45 -0.6 62,346 + MPMX19_02822 0.46 -1.6 62,346 + MPMX19_02822 0.46 -2.0 62,346 + MPMX19_02822 0.46 +1.6 62,346 + MPMX19_02822 0.46 -0.5 62,346 + MPMX19_02822 0.46 +0.0 62,346 + MPMX19_02822 0.46 +2.3 62,346 + MPMX19_02822 0.46 -0.6 62,346 + MPMX19_02822 0.46 -0.4 62,346 + MPMX19_02822 0.46 +1.4 62,346 + MPMX19_02822 0.46 -0.4 62,346 + MPMX19_02822 0.46 -1.1 62,346 + MPMX19_02822 0.46 +0.6 62,347 - MPMX19_02822 0.46 +0.2 62,347 - MPMX19_02822 0.46 -1.6 62,347 - MPMX19_02822 0.46 -0.8 62,347 - MPMX19_02822 0.46 -1.3 62,347 - MPMX19_02822 0.46 -0.4 62,347 - MPMX19_02822 0.46 -1.1 62,347 - MPMX19_02822 0.46 +0.4 62,490 + MPMX19_02822 0.60 +0.0 62,490 + MPMX19_02822 0.60 -0.8 62,491 - MPMX19_02822 0.60 -0.1 62,491 - MPMX19_02822 0.60 -1.8 62,491 - MPMX19_02822 0.60 -1.6 62,646 + MPMX19_02822 0.76 -1.1 62,646 + MPMX19_02822 0.76 +1.2 62,646 + MPMX19_02822 0.76 -0.1 62,647 - MPMX19_02822 0.76 -1.7 62,647 - MPMX19_02822 0.76 +1.0 62,647 - MPMX19_02822 0.76 -0.1 62,647 - MPMX19_02822 0.76 -1.3 62,950 - +0.4 62,950 - -0.1 62,950 - +0.9 63,016 + +0.6 63,044 + -0.2 63,091 + -0.8 63,091 + -2.3 63,091 + +0.6 63,092 - -1.4 63,102 + -0.4 63,103 - +0.0 63,210 + -1.1 63,210 + -0.6 63,211 - -0.8 63,225 + -0.6 63,225 + -0.7 63,225 + -0.4 63,226 - -0.3 63,490 + MPMX19_02823 0.21 +0.0 63,490 + MPMX19_02823 0.21 -1.7 63,491 - MPMX19_02823 0.21 +0.8 63,567 + MPMX19_02823 0.27 +1.2 63,568 - MPMX19_02823 0.27 -2.7 63,646 + MPMX19_02823 0.33 -0.6 63,646 + MPMX19_02823 0.33 +0.1 63,646 + MPMX19_02823 0.33 -0.6 63,646 + MPMX19_02823 0.33 -0.8 63,646 + MPMX19_02823 0.33 +2.3 63,646 + MPMX19_02823 0.33 -0.1 63,647 - MPMX19_02823 0.33 +0.7 63,647 - MPMX19_02823 0.33 -0.5 63,647 - MPMX19_02823 0.33 +0.3 63,647 - MPMX19_02823 0.33 -1.8 63,647 - MPMX19_02823 0.33 -0.8 63,647 - MPMX19_02823 0.33 -1.4 63,688 + MPMX19_02823 0.36 -1.0 63,688 + MPMX19_02823 0.36 -0.8 63,689 - MPMX19_02823 0.36 -1.3 63,745 + MPMX19_02823 0.40 -0.6 63,745 + MPMX19_02823 0.40 -0.4 63,745 + MPMX19_02823 0.40 -2.5 63,745 + MPMX19_02823 0.40 -0.8 63,745 + MPMX19_02823 0.40 -0.8 63,746 - MPMX19_02823 0.40 +0.6 63,746 - MPMX19_02823 0.40 -0.1 63,746 - MPMX19_02823 0.40 +0.7 63,746 - MPMX19_02823 0.40 -0.1
Or see this region's nucleotide sequence