Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02815

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02814 and MPMX19_02815 are separated by 70 nucleotidesMPMX19_02815 and MPMX19_02816 are separated by 14 nucleotidesMPMX19_02816 and MPMX19_02817 are separated by 83 nucleotides MPMX19_02814: MPMX19_02814 - hypothetical protein, at 50,686 to 51,957 _02814 MPMX19_02815: MPMX19_02815 - 2-keto-4-pentenoate hydratase, at 52,028 to 52,792 _02815 MPMX19_02816: MPMX19_02816 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 52,807 to 53,493 _02816 MPMX19_02817: MPMX19_02817 - Serine 3-dehydrogenase, at 53,577 to 54,365 _02817 Position (kb) 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 51.070 kb on + strand, within MPMX19_02814at 51.070 kb on + strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.071 kb on - strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.375 kb on + strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.376 kb on - strand, within MPMX19_02814at 51.418 kb on + strand, within MPMX19_02814at 51.418 kb on + strand, within MPMX19_02814at 51.419 kb on - strand, within MPMX19_02814at 51.419 kb on - strand, within MPMX19_02814at 51.446 kb on - strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.613 kb on + strand, within MPMX19_02814at 51.614 kb on - strand, within MPMX19_02814at 51.614 kb on - strand, within MPMX19_02814at 51.614 kb on - strand, within MPMX19_02814at 51.797 kb on - strand, within MPMX19_02814at 51.797 kb on - strand, within MPMX19_02814at 51.797 kb on - strand, within MPMX19_02814at 51.844 kb on + strandat 51.845 kb on - strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.895 kb on + strandat 51.896 kb on - strandat 51.896 kb on - strandat 51.896 kb on - strandat 51.896 kb on - strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.916 kb on + strandat 51.917 kb on - strandat 51.917 kb on - strandat 52.149 kb on - strand, within MPMX19_02815at 52.328 kb on + strand, within MPMX19_02815at 52.329 kb on - strand, within MPMX19_02815at 52.329 kb on - strand, within MPMX19_02815at 52.329 kb on - strand, within MPMX19_02815at 52.446 kb on - strand, within MPMX19_02815at 53.218 kb on + strand, within MPMX19_02816at 53.218 kb on + strand, within MPMX19_02816at 53.219 kb on - strand, within MPMX19_02816at 53.219 kb on - strand, within MPMX19_02816at 53.219 kb on - strand, within MPMX19_02816at 53.219 kb on - strand, within MPMX19_02816at 53.491 kb on + strandat 53.534 kb on + strandat 53.534 kb on + strandat 53.534 kb on + strandat 53.534 kb on + strandat 53.534 kb on + strandat 53.534 kb on + strandat 53.535 kb on - strandat 53.535 kb on - strandat 53.535 kb on - strandat 53.535 kb on - strandat 53.535 kb on - strandat 53.535 kb on - strandat 53.535 kb on - strandat 53.536 kb on + strandat 53.536 kb on + strandat 53.536 kb on + strandat 53.536 kb on + strandat 53.536 kb on + strandat 53.536 kb on + strandat 53.537 kb on - strandat 53.537 kb on - strandat 53.537 kb on - strandat 53.537 kb on - strandat 53.537 kb on - strandat 53.537 kb on - strandat 53.537 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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51,070 + MPMX19_02814 0.30 -1.5
51,070 + MPMX19_02814 0.30 -1.6
51,071 - MPMX19_02814 0.30 +0.6
51,071 - MPMX19_02814 0.30 +0.2
51,071 - MPMX19_02814 0.30 +0.0
51,071 - MPMX19_02814 0.30 -0.3
51,071 - MPMX19_02814 0.30 +0.0
51,375 + MPMX19_02814 0.54 -1.8
51,375 + MPMX19_02814 0.54 -0.3
51,375 + MPMX19_02814 0.54 +0.3
51,375 + MPMX19_02814 0.54 +0.9
51,375 + MPMX19_02814 0.54 +0.1
51,375 + MPMX19_02814 0.54 -0.3
51,375 + MPMX19_02814 0.54 -1.6
51,375 + MPMX19_02814 0.54 -0.8
51,375 + MPMX19_02814 0.54 +0.9
51,375 + MPMX19_02814 0.54 +1.3
51,376 - MPMX19_02814 0.54 -0.3
51,376 - MPMX19_02814 0.54 -0.1
51,376 - MPMX19_02814 0.54 -0.3
51,376 - MPMX19_02814 0.54 -0.5
51,376 - MPMX19_02814 0.54 -1.3
51,376 - MPMX19_02814 0.54 -1.8
51,376 - MPMX19_02814 0.54 +0.6
51,376 - MPMX19_02814 0.54 +0.0
51,376 - MPMX19_02814 0.54 +0.2
51,376 - MPMX19_02814 0.54 +0.2
51,376 - MPMX19_02814 0.54 +0.4
51,376 - MPMX19_02814 0.54 -1.8
51,376 - MPMX19_02814 0.54 -0.6
51,376 - MPMX19_02814 0.54 -1.3
51,418 + MPMX19_02814 0.58 -1.0
51,418 + MPMX19_02814 0.58 -0.8
51,419 - MPMX19_02814 0.58 -0.3
51,419 - MPMX19_02814 0.58 -0.1
51,446 - MPMX19_02814 0.60 -1.3
51,613 + MPMX19_02814 0.73 -0.5
51,613 + MPMX19_02814 0.73 -0.7
51,613 + MPMX19_02814 0.73 +0.3
51,613 + MPMX19_02814 0.73 +1.0
51,613 + MPMX19_02814 0.73 -0.3
51,614 - MPMX19_02814 0.73 +1.4
51,614 - MPMX19_02814 0.73 +1.5
51,614 - MPMX19_02814 0.73 -1.2
51,797 - MPMX19_02814 0.87 -0.5
51,797 - MPMX19_02814 0.87 +0.2
51,797 - MPMX19_02814 0.87 -1.3
51,844 + -0.9
51,845 - -0.3
51,895 + -1.1
51,895 + +0.2
51,895 + -0.6
51,895 + -0.7
51,895 + -1.0
51,895 + -2.2
51,895 + -0.4
51,896 - +0.4
51,896 - -0.6
51,896 - +0.7
51,896 - +0.4
51,916 + +0.0
51,916 + -0.4
51,916 + -0.4
51,916 + -1.6
51,916 + -0.1
51,916 + -0.3
51,917 - -1.1
51,917 - +1.7
52,149 - MPMX19_02815 0.16 -0.4
52,328 + MPMX19_02815 0.39 -0.8
52,329 - MPMX19_02815 0.39 -0.1
52,329 - MPMX19_02815 0.39 -0.6
52,329 - MPMX19_02815 0.39 -0.6
52,446 - MPMX19_02815 0.55 -1.6
53,218 + MPMX19_02816 0.60 +0.9
53,218 + MPMX19_02816 0.60 +2.0
53,219 - MPMX19_02816 0.60 -0.7
53,219 - MPMX19_02816 0.60 +1.6
53,219 - MPMX19_02816 0.60 -1.4
53,219 - MPMX19_02816 0.60 -0.6
53,491 + -0.8
53,534 + -2.0
53,534 + -0.1
53,534 + -0.0
53,534 + -1.6
53,534 + -1.3
53,534 + -1.1
53,535 - -1.1
53,535 - +0.6
53,535 - -0.3
53,535 - +1.0
53,535 - -0.3
53,535 - +1.3
53,535 - -0.3
53,536 + -1.3
53,536 + -0.6
53,536 + +0.7
53,536 + -1.8
53,536 + +0.2
53,536 + +0.3
53,537 - -0.0
53,537 - -1.3
53,537 - -1.6
53,537 - -0.3
53,537 - +0.9
53,537 - +2.3
53,537 - -1.4

Or see this region's nucleotide sequence