Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02529 and MPMX19_02530 are separated by 235 nucleotides MPMX19_02530 and MPMX19_02531 are separated by 5 nucleotides MPMX19_02531 and MPMX19_02532 overlap by 4 nucleotides MPMX19_02532 and MPMX19_02533 are separated by 7 nucleotides
MPMX19_02529: MPMX19_02529 - hypothetical protein, at 2,649,237 to 2,649,692
_02529
MPMX19_02530: MPMX19_02530 - Heme exporter protein C, at 2,649,928 to 2,650,686
_02530
MPMX19_02531: MPMX19_02531 - hypothetical protein, at 2,650,692 to 2,650,937
_02531
MPMX19_02532: MPMX19_02532 - Cytochrome c-type biogenesis protein CcmE, at 2,650,934 to 2,651,398
_02532
MPMX19_02533: MPMX19_02533 - Cytochrome c-type biogenesis protein CcmF, at 2,651,406 to 2,653,412
_02533
Position (kb)
2650
2651 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.790 kb on + strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.791 kb on - strand at 2649.806 kb on + strand at 2649.806 kb on + strand at 2649.807 kb on - strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.866 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.876 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2649.878 kb on + strand at 2650.684 kb on + strand at 2650.684 kb on + strand at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.886 kb on + strand, within MPMX19_02531 at 2650.958 kb on + strand at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.351 kb on + strand, within MPMX19_02532 at 2651.352 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,649,790 + +0.3 2,649,790 + +0.9 2,649,790 + +0.2 2,649,790 + -0.8 2,649,790 + -0.4 2,649,790 + -1.3 2,649,790 + +0.5 2,649,790 + +0.4 2,649,790 + -0.6 2,649,790 + -1.3 2,649,790 + -0.2 2,649,790 + -0.0 2,649,790 + -0.0 2,649,790 + -0.4 2,649,790 + -0.3 2,649,790 + +0.4 2,649,791 - +0.1 2,649,791 - +0.5 2,649,791 - -3.1 2,649,791 - -0.4 2,649,791 - -0.5 2,649,791 - -0.4 2,649,791 - -1.3 2,649,791 - -0.9 2,649,791 - -0.7 2,649,791 - +1.6 2,649,791 - -0.6 2,649,791 - -0.4 2,649,806 + -0.6 2,649,806 + +0.4 2,649,807 - +0.3 2,649,866 + +0.1 2,649,866 + +1.0 2,649,866 + -0.1 2,649,866 + -0.8 2,649,866 + +0.6 2,649,866 + -1.5 2,649,866 + -0.4 2,649,866 + -1.1 2,649,866 + -0.6 2,649,866 + -2.1 2,649,866 + -1.6 2,649,866 + -0.3 2,649,866 + +0.4 2,649,866 + -0.2 2,649,866 + -0.9 2,649,866 + -0.8 2,649,866 + -0.4 2,649,866 + -1.3 2,649,866 + +0.8 2,649,866 + -0.9 2,649,866 + -0.0 2,649,866 + -0.1 2,649,866 + -0.2 2,649,876 + +0.1 2,649,876 + -1.6 2,649,876 + -0.0 2,649,876 + -1.5 2,649,876 + -0.3 2,649,876 + -0.8 2,649,876 + -0.4 2,649,876 + +0.1 2,649,876 + -0.6 2,649,876 + -0.0 2,649,876 + -0.7 2,649,876 + -0.2 2,649,876 + +0.1 2,649,876 + -0.1 2,649,876 + -1.0 2,649,876 + -1.6 2,649,878 + -1.4 2,649,878 + -0.3 2,649,878 + +0.7 2,649,878 + -0.4 2,649,878 + +2.8 2,649,878 + -0.1 2,649,878 + -0.6 2,649,878 + +0.4 2,649,878 + +0.2 2,649,878 + +1.4 2,649,878 + -1.0 2,649,878 + -0.5 2,649,878 + +0.3 2,649,878 + -1.0 2,649,878 + +0.3 2,649,878 + -1.0 2,649,878 + -0.9 2,649,878 + -0.5 2,649,878 + +1.4 2,649,878 + +0.2 2,649,878 + -1.0 2,649,878 + +0.5 2,649,878 + -0.6 2,649,878 + +0.7 2,649,878 + +0.1 2,649,878 + +0.1 2,649,878 + -1.1 2,650,684 + +1.3 2,650,684 + +0.3 2,650,886 + MPMX19_02531 0.79 -2.1 2,650,886 + MPMX19_02531 0.79 -0.3 2,650,886 + MPMX19_02531 0.79 +0.4 2,650,886 + MPMX19_02531 0.79 -1.7 2,650,886 + MPMX19_02531 0.79 -1.3 2,650,958 + +0.0 2,651,351 + MPMX19_02532 0.90 -1.1 2,651,351 + MPMX19_02532 0.90 -0.3 2,651,351 + MPMX19_02532 0.90 -0.7 2,651,351 + MPMX19_02532 0.90 +1.4 2,651,351 + MPMX19_02532 0.90 -0.1 2,651,352 - -0.6
Or see this region's nucleotide sequence