Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02057

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02054 and MPMX19_02055 are separated by 110 nucleotidesMPMX19_02055 and MPMX19_02056 are separated by 32 nucleotidesMPMX19_02056 and MPMX19_02057 are separated by 17 nucleotidesMPMX19_02057 and MPMX19_02058 are separated by 174 nucleotidesMPMX19_02058 and MPMX19_02059 overlap by 11 nucleotides MPMX19_02054: MPMX19_02054 - hypothetical protein, at 2,150,659 to 2,151,330 _02054 MPMX19_02055: MPMX19_02055 - Hypoxic response protein 1, at 2,151,441 to 2,151,875 _02055 MPMX19_02056: MPMX19_02056 - hypothetical protein, at 2,151,908 to 2,152,174 _02056 MPMX19_02057: MPMX19_02057 - hypothetical protein, at 2,152,192 to 2,152,986 _02057 MPMX19_02058: MPMX19_02058 - hypothetical protein, at 2,153,161 to 2,153,397 _02058 MPMX19_02059: MPMX19_02059 - hypothetical protein, at 2,153,387 to 2,153,977 _02059 Position (kb) 2152 2153Strain fitness (log2 ratio) -2 -1 0 1 2at 2151.265 kb on + strandat 2151.265 kb on + strandat 2151.265 kb on + strandat 2151.266 kb on - strandat 2151.266 kb on - strandat 2151.316 kb on + strandat 2151.316 kb on + strandat 2151.317 kb on - strandat 2151.317 kb on - strandat 2151.317 kb on - strandat 2151.317 kb on - strandat 2151.317 kb on - strandat 2151.323 kb on + strandat 2151.324 kb on - strandat 2151.324 kb on - strandat 2151.324 kb on - strandat 2151.324 kb on - strandat 2151.381 kb on + strandat 2151.381 kb on + strandat 2151.382 kb on - strandat 2151.382 kb on - strandat 2151.382 kb on - strandat 2151.482 kb on - strandat 2151.672 kb on + strand, within MPMX19_02055at 2151.672 kb on + strand, within MPMX19_02055at 2151.678 kb on + strand, within MPMX19_02055at 2151.678 kb on + strand, within MPMX19_02055at 2151.678 kb on + strand, within MPMX19_02055at 2151.678 kb on + strand, within MPMX19_02055at 2151.678 kb on + strand, within MPMX19_02055at 2151.678 kb on + strand, within MPMX19_02055at 2151.679 kb on - strand, within MPMX19_02055at 2151.679 kb on - strand, within MPMX19_02055at 2151.957 kb on - strand, within MPMX19_02056at 2152.352 kb on + strand, within MPMX19_02057at 2152.352 kb on + strand, within MPMX19_02057at 2152.353 kb on - strand, within MPMX19_02057at 2152.353 kb on - strand, within MPMX19_02057at 2152.353 kb on - strand, within MPMX19_02057at 2152.353 kb on - strand, within MPMX19_02057at 2152.353 kb on - strand, within MPMX19_02057at 2152.887 kb on - strand, within MPMX19_02057at 2152.955 kb on + strandat 2152.955 kb on + strandat 2152.955 kb on + strandat 2152.956 kb on - strandat 2152.956 kb on - strandat 2152.956 kb on - strandat 2152.956 kb on - strandat 2152.956 kb on - strandat 2152.956 kb on - strandat 2153.110 kb on + strandat 2153.110 kb on + strandat 2153.111 kb on - strandat 2153.111 kb on - strandat 2153.111 kb on - strandat 2153.127 kb on + strandat 2153.127 kb on + strandat 2153.127 kb on + strandat 2153.128 kb on - strandat 2153.370 kb on + strand, within MPMX19_02058at 2153.371 kb on - strand, within MPMX19_02058at 2153.371 kb on - strand, within MPMX19_02058at 2153.371 kb on - strand, within MPMX19_02058at 2153.371 kb on - strand, within MPMX19_02058at 2153.371 kb on - strand, within MPMX19_02058at 2153.371 kb on - strand, within MPMX19_02058

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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2,151,265 + -0.2
2,151,265 + -0.5
2,151,265 + -0.8
2,151,266 - -1.7
2,151,266 - -0.6
2,151,316 + -2.0
2,151,316 + -0.7
2,151,317 - -0.2
2,151,317 - -1.2
2,151,317 - +0.5
2,151,317 - +0.8
2,151,317 - -0.8
2,151,323 + -0.5
2,151,324 - +0.8
2,151,324 - +0.2
2,151,324 - +0.9
2,151,324 - +0.5
2,151,381 + -2.1
2,151,381 + -0.6
2,151,382 - +0.0
2,151,382 - -0.5
2,151,382 - -1.2
2,151,482 - -1.6
2,151,672 + MPMX19_02055 0.53 +0.1
2,151,672 + MPMX19_02055 0.53 -0.7
2,151,678 + MPMX19_02055 0.54 +0.5
2,151,678 + MPMX19_02055 0.54 -0.8
2,151,678 + MPMX19_02055 0.54 -0.3
2,151,678 + MPMX19_02055 0.54 +0.1
2,151,678 + MPMX19_02055 0.54 -0.8
2,151,678 + MPMX19_02055 0.54 -2.3
2,151,679 - MPMX19_02055 0.55 -0.7
2,151,679 - MPMX19_02055 0.55 -0.6
2,151,957 - MPMX19_02056 0.18 -1.0
2,152,352 + MPMX19_02057 0.20 -2.2
2,152,352 + MPMX19_02057 0.20 -1.5
2,152,353 - MPMX19_02057 0.20 -1.0
2,152,353 - MPMX19_02057 0.20 -0.7
2,152,353 - MPMX19_02057 0.20 -1.5
2,152,353 - MPMX19_02057 0.20 -1.1
2,152,353 - MPMX19_02057 0.20 -0.7
2,152,887 - MPMX19_02057 0.87 -0.8
2,152,955 + +0.5
2,152,955 + -0.5
2,152,955 + -1.6
2,152,956 - -0.2
2,152,956 - -1.0
2,152,956 - -2.3
2,152,956 - -0.2
2,152,956 - +0.0
2,152,956 - +0.4
2,153,110 + -0.0
2,153,110 + -0.7
2,153,111 - -1.5
2,153,111 - -0.1
2,153,111 - -0.1
2,153,127 + -1.0
2,153,127 + +1.8
2,153,127 + -1.9
2,153,128 - -1.0
2,153,370 + MPMX19_02058 0.88 +1.0
2,153,371 - MPMX19_02058 0.89 -1.1
2,153,371 - MPMX19_02058 0.89 -0.6
2,153,371 - MPMX19_02058 0.89 -1.0
2,153,371 - MPMX19_02058 0.89 +0.7
2,153,371 - MPMX19_02058 0.89 -0.5
2,153,371 - MPMX19_02058 0.89 +0.0

Or see this region's nucleotide sequence