Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02002

Experiment: NL-CCM, start OD=0.1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.1
2,090,512	+		MPMX19_02001	0.43	-0.3
2,090,513	-		MPMX19_02001	0.43	+0.2
2,090,513	-		MPMX19_02001	0.43	-0.9
2,090,698	+		MPMX19_02001	0.55	-1.4
2,090,698	+		MPMX19_02001	0.55	-0.4
2,090,698	+		MPMX19_02001	0.55	+0.2
2,090,699	-		MPMX19_02001	0.55	+0.8
2,090,699	-		MPMX19_02001	0.55	-1.0
2,090,699	-		MPMX19_02001	0.55	+0.2
2,090,699	-		MPMX19_02001	0.55	-1.4
2,090,699	-		MPMX19_02001	0.55	-1.2
2,090,708	+		MPMX19_02001	0.55	-1.4
2,090,708	+		MPMX19_02001	0.55	-1.1
2,090,709	-		MPMX19_02001	0.55	-1.9
2,090,761	+		MPMX19_02001	0.58	-1.0
2,090,761	+		MPMX19_02001	0.58	+0.2
2,090,761	+		MPMX19_02001	0.58	+0.6
2,090,761	+		MPMX19_02001	0.58	+1.1
2,090,761	+		MPMX19_02001	0.58	+0.4
2,090,761	+		MPMX19_02001	0.58	-0.7
2,090,761	+		MPMX19_02001	0.58	-1.5
2,090,762	+		MPMX19_02001	0.59	-1.3
2,090,762	-		MPMX19_02001	0.59	-0.8
2,090,762	-		MPMX19_02001	0.59	+0.5
2,090,762	-		MPMX19_02001	0.59	-0.3
2,090,762	-		MPMX19_02001	0.59	-1.2
2,090,762	-		MPMX19_02001	0.59	-2.2
2,090,762	-		MPMX19_02001	0.59	-0.2
2,090,762	-		MPMX19_02001	0.59	-1.8
2,090,762	-		MPMX19_02001	0.59	-1.8
2,090,762	-		MPMX19_02001	0.59	+0.3
2,090,762	-		MPMX19_02001	0.59	+1.1
2,090,774	-		MPMX19_02001	0.59	+1.4
2,090,774	-		MPMX19_02001	0.59	-0.8
2,090,774	-		MPMX19_02001	0.59	+1.4
2,090,869	+		MPMX19_02001	0.65	-0.3
2,090,869	+		MPMX19_02001	0.65	+0.1
2,090,869	+		MPMX19_02001	0.65	+0.5
2,090,869	+		MPMX19_02001	0.65	+0.2
2,090,869	+		MPMX19_02001	0.65	-0.4
2,090,869	+		MPMX19_02001	0.65	-0.5
2,090,869	+		MPMX19_02001	0.65	+0.6
2,090,869	+		MPMX19_02001	0.65	-1.1
2,090,869	+		MPMX19_02001	0.65	-1.0
2,090,870	-		MPMX19_02001	0.65	+0.3
2,090,870	-		MPMX19_02001	0.65	-1.0
2,090,870	-		MPMX19_02001	0.65	-0.7
2,090,870	-		MPMX19_02001	0.65	+0.7
2,090,870	-		MPMX19_02001	0.65	+0.6
2,090,870	-		MPMX19_02001	0.65	-2.0
2,090,870	-		MPMX19_02001	0.65	+0.5
2,090,870	-		MPMX19_02001	0.65	-1.2
2,090,875	+		MPMX19_02001	0.66	-1.4
2,090,875	+		MPMX19_02001	0.66	-1.7
2,090,875	+		MPMX19_02001	0.66	-0.2
2,090,875	+		MPMX19_02001	0.66	+0.1
2,090,875	+		MPMX19_02001	0.66	-0.5
2,090,875	+		MPMX19_02001	0.66	-1.2
2,090,875	+		MPMX19_02001	0.66	+0.2
2,090,875	+		MPMX19_02001	0.66	+0.1
2,090,875	+		MPMX19_02001	0.66	+0.2
2,090,876	-		MPMX19_02001	0.66	-1.5
2,090,876	-		MPMX19_02001	0.66	+0.5
2,090,876	-		MPMX19_02001	0.66	-1.4
2,090,876	-		MPMX19_02001	0.66	+0.6
2,090,876	-		MPMX19_02001	0.66	-1.4
2,090,876	-		MPMX19_02001	0.66	+0.5
2,090,876	-		MPMX19_02001	0.66	+0.1
2,090,876	-		MPMX19_02001	0.66	-1.7
2,090,876	-		MPMX19_02001	0.66	-1.6
2,090,876	-		MPMX19_02001	0.66	+0.4
2,090,876	-		MPMX19_02001	0.66	-1.5
2,090,876	-		MPMX19_02001	0.66	-0.0
2,090,876	-		MPMX19_02001	0.66	+0.8
2,091,061	+		MPMX19_02001	0.77	+0.5
2,091,061	+		MPMX19_02001	0.77	-1.0
2,091,061	+		MPMX19_02001	0.77	-1.5
2,091,062	-		MPMX19_02001	0.77	-1.0
2,091,062	-		MPMX19_02001	0.77	+0.5
2,091,062	-		MPMX19_02001	0.77	+0.1
2,091,062	-		MPMX19_02001	0.77	-1.4
2,091,109	+		MPMX19_02001	0.80	-0.8
2,091,109	+		MPMX19_02001	0.80	+0.3
2,091,109	+		MPMX19_02001	0.80	-1.7
2,091,110	-		MPMX19_02001	0.80	+0.3
2,091,110	-		MPMX19_02001	0.80	+0.0
2,091,110	-		MPMX19_02001	0.80	-1.4
2,091,110	-		MPMX19_02001	0.80	-0.4
2,091,110	-		MPMX19_02001	0.80	+0.8
2,091,277	+				-2.6
2,091,277	+				-0.3
2,091,277	+				+0.5
2,091,277	+				+0.4
2,091,277	+				-0.1
2,091,277	+				+1.4
2,091,277	+				-1.7
2,091,277	+				-1.5
2,091,277	+				-0.4
2,091,277	+				-0.7
2,091,277	+				-1.0
2,091,278	-				+1.0
2,091,278	-				+0.1
2,091,278	-				+0.8
2,091,278	-				-2.0
2,091,278	-				+0.8
2,091,278	-				+0.1
2,091,278	-				-0.4
2,091,278	-				+0.7
2,091,278	-				+0.6
2,091,278	-				+0.9
2,091,278	-				-0.8
2,091,278	-				-1.1
2,091,278	-				+0.1
2,091,278	-				+0.3
2,091,278	-				+0.3
2,091,278	-				+0.6
2,091,278	-				-0.0
2,091,278	-				-1.3
2,091,279	-				+0.2
2,091,403	+				-0.3
2,091,403	+				-0.3
2,091,403	+				-1.5
2,091,403	+				-1.3
2,091,403	+				+0.9
2,091,403	+				-1.0
2,091,403	+				+0.6
2,091,403	+				-1.5
2,091,403	+				-0.4
2,091,403	+				-0.3
2,091,403	+				-0.3
2,091,404	-				-0.9
2,091,404	-				+0.1
2,091,404	-				-0.4
2,091,404	-				+0.5
2,091,404	-				-0.5
2,091,404	-				+1.2
2,091,404	-				-1.2
2,091,404	-				+1.0
2,091,404	-				-0.8
2,091,404	-				+0.8
2,091,404	-				-1.0
2,091,404	-				-0.5
2,091,404	-				-0.5
2,091,404	-				-0.9
2,091,404	-				-0.5
2,091,406	+				+0.2
2,091,406	+				-0.3
2,091,406	+				-0.4
2,091,407	-				-0.5
2,091,407	-				-0.1
2,091,407	-				+0.2
2,091,407	-				+0.9
2,091,407	-				+1.4
2,091,407	-				-0.0
2,091,427	+				-1.3
2,091,427	+				-1.2
2,091,427	+				-1.0
2,091,427	+				-0.8
2,091,427	+				-0.1
2,091,427	+				+0.4
2,091,427	+				-0.8
2,091,427	+				+0.2
2,091,427	+				+0.1
2,091,427	+				-1.7
2,091,427	+				+0.4
2,091,427	+				+0.1
2,091,428	-				+0.3
2,091,428	-				-1.0
2,091,428	-				-0.1
2,091,428	-				+1.6
2,091,428	-				-0.7
2,091,428	-				-0.2
2,091,428	-				-2.2
2,091,428	-				-1.5
2,091,428	-				-0.4
2,091,428	-				+0.6
2,091,428	-				+0.5
2,091,428	-				-1.4
2,091,428	-				-0.2
2,091,470	+				+1.1
2,091,471	-				-0.3
2,091,471	-				+0.1
2,091,471	-				+0.0
2,091,976	+		MPMX19_02002	0.82	-0.2
2,091,976	+		MPMX19_02002	0.82	-0.4
2,091,976	+		MPMX19_02002	0.82	-1.9
2,091,976	+		MPMX19_02002	0.82	-0.9
2,091,976	+		MPMX19_02002	0.82	-1.4
2,091,976	+		MPMX19_02002	0.82	-1.2
2,091,976	+		MPMX19_02002	0.82	-1.0
2,091,976	+		MPMX19_02002	0.82	-0.5
2,091,977	-		MPMX19_02002	0.83	-0.9
2,091,977	-		MPMX19_02002	0.83	-2.7
2,091,977	-		MPMX19_02002	0.83	-0.2
2,091,977	-		MPMX19_02002	0.83	-0.7
2,092,156	+				+0.9
2,092,157	-				-0.7
2,092,157	-				-1.0
2,092,157	-				-1.1
2,092,157	-				+0.4
2,092,357	+		MPMX19_02003	0.21	-0.8
2,092,357	+		MPMX19_02003	0.21	-0.5
2,092,357	+		MPMX19_02003	0.21	-0.6
2,092,357	+		MPMX19_02003	0.21	+0.3
2,092,357	+		MPMX19_02003	0.21	-0.0
2,092,357	+		MPMX19_02003	0.21	+1.1
2,092,357	+		MPMX19_02003	0.21	-0.6
2,092,357	+		MPMX19_02003	0.21	+0.2
2,092,357	+		MPMX19_02003	0.21	-0.5
2,092,357	+		MPMX19_02003	0.21	+1.3
2,092,357	+		MPMX19_02003	0.21	+0.2
2,092,357	+		MPMX19_02003	0.21	-1.0
2,092,357	+		MPMX19_02003	0.21	-0.2
2,092,357	+		MPMX19_02003	0.21	-1.1
2,092,358	-		MPMX19_02003	0.21	-0.4
2,092,358	-		MPMX19_02003	0.21	+0.1
2,092,358	-		MPMX19_02003	0.21	-0.0
2,092,358	-		MPMX19_02003	0.21	-1.4
2,092,358	-		MPMX19_02003	0.21	+0.3
2,092,358	-		MPMX19_02003	0.21	-1.0
2,092,358	-		MPMX19_02003	0.21	-1.7
2,092,358	-		MPMX19_02003	0.21	-0.7
2,092,358	-		MPMX19_02003	0.21	-0.7
2,092,358	-		MPMX19_02003	0.21	+0.3
2,092,675	+		MPMX19_02003	0.57	-0.5
2,092,676	-		MPMX19_02003	0.57	+0.2
2,092,684	+		MPMX19_02003	0.58	-1.7
2,092,684	+		MPMX19_02003	0.58	-0.6
2,092,684	+		MPMX19_02003	0.58	+1.6
2,092,685	-		MPMX19_02003	0.58	+1.2
2,092,685	-		MPMX19_02003	0.58	-0.8
2,092,720	+		MPMX19_02003	0.62	-0.5
2,092,720	+		MPMX19_02003	0.62	+1.1
2,092,720	+		MPMX19_02003	0.62	+1.2
2,092,720	+		MPMX19_02003	0.62	-2.1
2,092,720	+		MPMX19_02003	0.62	+0.5
2,092,720	+		MPMX19_02003	0.62	+0.8
2,092,720	+		MPMX19_02003	0.62	-0.8
2,092,720	+		MPMX19_02003	0.62	-1.8
2,092,720	+		MPMX19_02003	0.62	-1.4
2,092,720	+		MPMX19_02003	0.62	-1.2
2,092,721	-		MPMX19_02003	0.62	-0.4
2,092,721	-		MPMX19_02003	0.62	+0.7
2,092,721	-		MPMX19_02003	0.62	+0.2
2,092,721	-		MPMX19_02003	0.62	-0.9