Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01663

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01662 and MPMX19_01663 are separated by 167 nucleotidesMPMX19_01663 and MPMX19_01664 are separated by 286 nucleotides MPMX19_01662: MPMX19_01662 - hypothetical protein, at 1,744,784 to 1,748,452 _01662 MPMX19_01663: MPMX19_01663 - hypothetical protein, at 1,748,620 to 1,749,201 _01663 MPMX19_01664: MPMX19_01664 - Co-chaperone protein DjlA, at 1,749,488 to 1,750,270 _01664 Position (kb) 1748 1749 1750Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1747.743 kb on + strand, within MPMX19_01662at 1747.743 kb on + strand, within MPMX19_01662at 1747.743 kb on + strand, within MPMX19_01662at 1747.743 kb on + strand, within MPMX19_01662at 1747.744 kb on - strand, within MPMX19_01662at 1747.744 kb on - strand, within MPMX19_01662at 1747.744 kb on - strand, within MPMX19_01662at 1747.744 kb on - strand, within MPMX19_01662at 1747.767 kb on + strand, within MPMX19_01662at 1747.767 kb on + strand, within MPMX19_01662at 1747.767 kb on + strand, within MPMX19_01662at 1747.767 kb on + strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.768 kb on - strand, within MPMX19_01662at 1747.903 kb on - strand, within MPMX19_01662at 1747.903 kb on - strand, within MPMX19_01662at 1747.947 kb on + strand, within MPMX19_01662at 1747.947 kb on + strand, within MPMX19_01662at 1747.948 kb on - strand, within MPMX19_01662at 1747.948 kb on - strand, within MPMX19_01662at 1747.948 kb on - strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.046 kb on + strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.047 kb on - strand, within MPMX19_01662at 1748.289 kb on + strandat 1748.289 kb on + strandat 1748.289 kb on + strandat 1748.289 kb on + strandat 1748.290 kb on - strandat 1748.290 kb on - strandat 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.853 kb on + strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.854 kb on - strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.949 kb on + strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1748.950 kb on - strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.119 kb on + strand, within MPMX19_01663at 1749.291 kb on + strandat 1749.291 kb on + strandat 1749.292 kb on - strandat 1749.366 kb on + strandat 1749.366 kb on + strandat 1749.366 kb on + strandat 1749.366 kb on + strandat 1749.367 kb on - strandat 1749.441 kb on + strandat 1749.442 kb on - strandat 1749.442 kb on - strandat 1749.442 kb on - strandat 1749.442 kb on - strandat 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.723 kb on + strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.724 kb on - strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.842 kb on + strand, within MPMX19_01664at 1749.843 kb on - strand, within MPMX19_01664at 1749.843 kb on - strand, within MPMX19_01664at 1749.843 kb on - strand, within MPMX19_01664at 1749.843 kb on - strand, within MPMX19_01664at 1749.959 kb on + strand, within MPMX19_01664at 1749.959 kb on + strand, within MPMX19_01664at 1749.959 kb on + strand, within MPMX19_01664at 1749.959 kb on + strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1749.960 kb on - strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.061 kb on + strand, within MPMX19_01664at 1750.062 kb on - strand, within MPMX19_01664at 1750.062 kb on - strand, within MPMX19_01664at 1750.062 kb on - strand, within MPMX19_01664at 1750.062 kb on - strand, within MPMX19_01664

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,747,743 + MPMX19_01662 0.81 -1.2
1,747,743 + MPMX19_01662 0.81 -0.6
1,747,743 + MPMX19_01662 0.81 -1.4
1,747,743 + MPMX19_01662 0.81 +1.1
1,747,744 - MPMX19_01662 0.81 -1.0
1,747,744 - MPMX19_01662 0.81 -0.2
1,747,744 - MPMX19_01662 0.81 -2.0
1,747,744 - MPMX19_01662 0.81 -1.4
1,747,767 + MPMX19_01662 0.81 -0.2
1,747,767 + MPMX19_01662 0.81 +0.4
1,747,767 + MPMX19_01662 0.81 -1.0
1,747,767 + MPMX19_01662 0.81 -1.0
1,747,768 - MPMX19_01662 0.81 -0.2
1,747,768 - MPMX19_01662 0.81 +1.0
1,747,768 - MPMX19_01662 0.81 +0.2
1,747,768 - MPMX19_01662 0.81 -0.3
1,747,768 - MPMX19_01662 0.81 -0.5
1,747,768 - MPMX19_01662 0.81 -0.4
1,747,768 - MPMX19_01662 0.81 -0.8
1,747,768 - MPMX19_01662 0.81 -0.3
1,747,768 - MPMX19_01662 0.81 -1.4
1,747,768 - MPMX19_01662 0.81 -0.1
1,747,903 - MPMX19_01662 0.85 +0.8
1,747,903 - MPMX19_01662 0.85 -1.0
1,747,947 + MPMX19_01662 0.86 -1.0
1,747,947 + MPMX19_01662 0.86 -1.6
1,747,948 - MPMX19_01662 0.86 -0.3
1,747,948 - MPMX19_01662 0.86 -2.3
1,747,948 - MPMX19_01662 0.86 -2.1
1,748,046 + MPMX19_01662 0.89 -1.1
1,748,046 + MPMX19_01662 0.89 -0.8
1,748,046 + MPMX19_01662 0.89 -1.9
1,748,046 + MPMX19_01662 0.89 -1.6
1,748,046 + MPMX19_01662 0.89 -0.3
1,748,046 + MPMX19_01662 0.89 -1.8
1,748,046 + MPMX19_01662 0.89 +0.4
1,748,046 + MPMX19_01662 0.89 +0.2
1,748,046 + MPMX19_01662 0.89 -0.6
1,748,046 + MPMX19_01662 0.89 -0.5
1,748,046 + MPMX19_01662 0.89 +0.1
1,748,046 + MPMX19_01662 0.89 +0.4
1,748,046 + MPMX19_01662 0.89 -0.1
1,748,046 + MPMX19_01662 0.89 -0.9
1,748,046 + MPMX19_01662 0.89 -0.2
1,748,047 - MPMX19_01662 0.89 -0.7
1,748,047 - MPMX19_01662 0.89 -1.1
1,748,047 - MPMX19_01662 0.89 +0.2
1,748,047 - MPMX19_01662 0.89 -0.1
1,748,047 - MPMX19_01662 0.89 -0.1
1,748,047 - MPMX19_01662 0.89 -0.2
1,748,047 - MPMX19_01662 0.89 +0.6
1,748,047 - MPMX19_01662 0.89 +0.4
1,748,047 - MPMX19_01662 0.89 -0.2
1,748,047 - MPMX19_01662 0.89 -0.4
1,748,047 - MPMX19_01662 0.89 +1.2
1,748,047 - MPMX19_01662 0.89 +0.4
1,748,047 - MPMX19_01662 0.89 -1.1
1,748,047 - MPMX19_01662 0.89 +0.2
1,748,047 - MPMX19_01662 0.89 -1.2
1,748,047 - MPMX19_01662 0.89 -1.4
1,748,047 - MPMX19_01662 0.89 -0.8
1,748,047 - MPMX19_01662 0.89 -0.6
1,748,047 - MPMX19_01662 0.89 +0.0
1,748,047 - MPMX19_01662 0.89 +0.4
1,748,047 - MPMX19_01662 0.89 -1.6
1,748,047 - MPMX19_01662 0.89 -2.9
1,748,047 - MPMX19_01662 0.89 +0.3
1,748,289 + -1.6
1,748,289 + -0.6
1,748,289 + +0.4
1,748,289 + -1.0
1,748,290 - -0.7
1,748,290 - +0.8
1,748,853 + MPMX19_01663 0.40 +0.9
1,748,853 + MPMX19_01663 0.40 +0.8
1,748,853 + MPMX19_01663 0.40 -0.8
1,748,853 + MPMX19_01663 0.40 +1.8
1,748,853 + MPMX19_01663 0.40 -0.4
1,748,853 + MPMX19_01663 0.40 +1.5
1,748,853 + MPMX19_01663 0.40 +0.7
1,748,853 + MPMX19_01663 0.40 -0.9
1,748,853 + MPMX19_01663 0.40 -1.7
1,748,853 + MPMX19_01663 0.40 +0.4
1,748,853 + MPMX19_01663 0.40 -0.0
1,748,853 + MPMX19_01663 0.40 -0.8
1,748,853 + MPMX19_01663 0.40 +0.5
1,748,853 + MPMX19_01663 0.40 -0.6
1,748,853 + MPMX19_01663 0.40 -0.7
1,748,853 + MPMX19_01663 0.40 -0.7
1,748,853 + MPMX19_01663 0.40 +0.8
1,748,853 + MPMX19_01663 0.40 +0.8
1,748,854 - MPMX19_01663 0.40 -0.6
1,748,854 - MPMX19_01663 0.40 -1.8
1,748,854 - MPMX19_01663 0.40 -2.2
1,748,854 - MPMX19_01663 0.40 +1.1
1,748,854 - MPMX19_01663 0.40 +2.1
1,748,854 - MPMX19_01663 0.40 +0.5
1,748,949 + MPMX19_01663 0.57 +1.5
1,748,949 + MPMX19_01663 0.57 -0.4
1,748,949 + MPMX19_01663 0.57 -0.6
1,748,949 + MPMX19_01663 0.57 +1.8
1,748,949 + MPMX19_01663 0.57 +0.4
1,748,949 + MPMX19_01663 0.57 -1.4
1,748,949 + MPMX19_01663 0.57 -1.0
1,748,949 + MPMX19_01663 0.57 +0.3
1,748,949 + MPMX19_01663 0.57 -1.0
1,748,949 + MPMX19_01663 0.57 -0.3
1,748,949 + MPMX19_01663 0.57 -1.8
1,748,949 + MPMX19_01663 0.57 -0.9
1,748,950 - MPMX19_01663 0.57 -2.0
1,748,950 - MPMX19_01663 0.57 +0.3
1,748,950 - MPMX19_01663 0.57 -1.2
1,748,950 - MPMX19_01663 0.57 +0.4
1,748,950 - MPMX19_01663 0.57 +0.2
1,749,119 + MPMX19_01663 0.86 +1.8
1,749,119 + MPMX19_01663 0.86 -1.2
1,749,119 + MPMX19_01663 0.86 +1.9
1,749,119 + MPMX19_01663 0.86 +0.8
1,749,119 + MPMX19_01663 0.86 -0.6
1,749,291 + +0.1
1,749,291 + -0.0
1,749,292 - -1.5
1,749,366 + +3.0
1,749,366 + -2.5
1,749,366 + +0.1
1,749,366 + -1.4
1,749,367 - -1.1
1,749,441 + +0.1
1,749,442 - -1.3
1,749,442 - +1.0
1,749,442 - +0.5
1,749,442 - -0.6
1,749,723 + MPMX19_01664 0.30 -1.4
1,749,723 + MPMX19_01664 0.30 -0.0
1,749,723 + MPMX19_01664 0.30 -0.0
1,749,723 + MPMX19_01664 0.30 -0.3
1,749,723 + MPMX19_01664 0.30 +0.3
1,749,723 + MPMX19_01664 0.30 -1.8
1,749,723 + MPMX19_01664 0.30 -1.6
1,749,723 + MPMX19_01664 0.30 -0.3
1,749,723 + MPMX19_01664 0.30 -2.2
1,749,723 + MPMX19_01664 0.30 -1.7
1,749,723 + MPMX19_01664 0.30 -1.6
1,749,723 + MPMX19_01664 0.30 -1.3
1,749,723 + MPMX19_01664 0.30 +0.4
1,749,723 + MPMX19_01664 0.30 -0.3
1,749,723 + MPMX19_01664 0.30 -0.0
1,749,723 + MPMX19_01664 0.30 +1.2
1,749,724 - MPMX19_01664 0.30 -1.0
1,749,724 - MPMX19_01664 0.30 -0.8
1,749,724 - MPMX19_01664 0.30 +0.8
1,749,724 - MPMX19_01664 0.30 +0.3
1,749,724 - MPMX19_01664 0.30 +0.9
1,749,724 - MPMX19_01664 0.30 +1.0
1,749,724 - MPMX19_01664 0.30 -0.3
1,749,724 - MPMX19_01664 0.30 +0.8
1,749,724 - MPMX19_01664 0.30 -0.3
1,749,842 + MPMX19_01664 0.45 +0.4
1,749,842 + MPMX19_01664 0.45 -0.8
1,749,842 + MPMX19_01664 0.45 -0.3
1,749,842 + MPMX19_01664 0.45 -0.5
1,749,842 + MPMX19_01664 0.45 +0.2
1,749,843 - MPMX19_01664 0.45 +0.4
1,749,843 - MPMX19_01664 0.45 +0.3
1,749,843 - MPMX19_01664 0.45 -1.5
1,749,843 - MPMX19_01664 0.45 -0.0
1,749,959 + MPMX19_01664 0.60 +0.1
1,749,959 + MPMX19_01664 0.60 -0.0
1,749,959 + MPMX19_01664 0.60 -1.1
1,749,959 + MPMX19_01664 0.60 -0.1
1,749,960 - MPMX19_01664 0.60 -0.8
1,749,960 - MPMX19_01664 0.60 -1.6
1,749,960 - MPMX19_01664 0.60 +0.4
1,749,960 - MPMX19_01664 0.60 -1.0
1,749,960 - MPMX19_01664 0.60 -0.8
1,749,960 - MPMX19_01664 0.60 -0.0
1,749,960 - MPMX19_01664 0.60 -0.2
1,749,960 - MPMX19_01664 0.60 +1.5
1,750,061 + MPMX19_01664 0.73 -0.9
1,750,061 + MPMX19_01664 0.73 -0.9
1,750,061 + MPMX19_01664 0.73 -1.2
1,750,061 + MPMX19_01664 0.73 +0.8
1,750,061 + MPMX19_01664 0.73 +1.1
1,750,061 + MPMX19_01664 0.73 -1.3
1,750,062 - MPMX19_01664 0.73 -2.0
1,750,062 - MPMX19_01664 0.73 -0.4
1,750,062 - MPMX19_01664 0.73 -0.2
1,750,062 - MPMX19_01664 0.73 -1.8

Or see this region's nucleotide sequence