Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01515

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01513 and MPMX19_01514 are separated by 51 nucleotidesMPMX19_01514 and MPMX19_01515 overlap by 4 nucleotidesMPMX19_01515 and MPMX19_01516 are separated by 133 nucleotides MPMX19_01513: MPMX19_01513 - hypothetical protein, at 1,585,322 to 1,585,630 _01513 MPMX19_01514: MPMX19_01514 - Ribosomal RNA small subunit methyltransferase A, at 1,585,682 to 1,586,596 _01514 MPMX19_01515: MPMX19_01515 - Peptidyl-tRNA hydrolase ArfB, at 1,586,593 to 1,587,012 _01515 MPMX19_01516: MPMX19_01516 - hypothetical protein, at 1,587,146 to 1,588,387 _01516 Position (kb) 1586 1587 1588Strain fitness (log2 ratio) -2 -1 0 1 2at 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.688 kb on + strandat 1585.689 kb on - strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1585.690 kb on + strandat 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.299 kb on + strand, within MPMX19_01516at 1587.300 kb on - strand, within MPMX19_01516at 1587.300 kb on - strand, within MPMX19_01516at 1587.300 kb on - strand, within MPMX19_01516at 1587.300 kb on - strand, within MPMX19_01516at 1587.300 kb on - strand, within MPMX19_01516at 1587.300 kb on - strand, within MPMX19_01516at 1587.300 kb on - strand, within MPMX19_01516at 1587.300 kb on - strand, within MPMX19_01516at 1587.413 kb on + strand, within MPMX19_01516at 1587.413 kb on + strand, within MPMX19_01516at 1587.413 kb on + strand, within MPMX19_01516at 1587.413 kb on + strand, within MPMX19_01516at 1587.414 kb on - strand, within MPMX19_01516at 1587.414 kb on - strand, within MPMX19_01516at 1587.414 kb on - strand, within MPMX19_01516at 1587.414 kb on - strand, within MPMX19_01516at 1587.414 kb on - strand, within MPMX19_01516at 1587.414 kb on - strand, within MPMX19_01516at 1587.414 kb on - strand, within MPMX19_01516at 1587.414 kb on - strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.512 kb on + strand, within MPMX19_01516at 1587.513 kb on - strand, within MPMX19_01516at 1587.513 kb on - strand, within MPMX19_01516at 1587.513 kb on - strand, within MPMX19_01516at 1587.513 kb on - strand, within MPMX19_01516at 1587.513 kb on - strand, within MPMX19_01516at 1587.513 kb on - strand, within MPMX19_01516at 1587.513 kb on - strand, within MPMX19_01516at 1587.513 kb on - strand, within MPMX19_01516at 1587.667 kb on + strand, within MPMX19_01516at 1587.667 kb on + strand, within MPMX19_01516at 1587.667 kb on + strand, within MPMX19_01516at 1587.667 kb on + strand, within MPMX19_01516at 1587.667 kb on + strand, within MPMX19_01516at 1587.668 kb on - strand, within MPMX19_01516at 1587.668 kb on - strand, within MPMX19_01516at 1587.941 kb on + strand, within MPMX19_01516at 1587.941 kb on + strand, within MPMX19_01516at 1587.941 kb on + strand, within MPMX19_01516at 1587.941 kb on + strand, within MPMX19_01516at 1587.941 kb on + strand, within MPMX19_01516at 1587.941 kb on + strand, within MPMX19_01516at 1587.941 kb on + strand, within MPMX19_01516at 1587.941 kb on + strand, within MPMX19_01516at 1587.942 kb on - strand, within MPMX19_01516at 1587.942 kb on - strand, within MPMX19_01516at 1587.942 kb on - strand, within MPMX19_01516at 1587.942 kb on - strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.010 kb on + strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516at 1588.011 kb on - strand, within MPMX19_01516

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,585,688 + -0.3
1,585,688 + -1.0
1,585,688 + +0.7
1,585,688 + -0.4
1,585,688 + +0.7
1,585,688 + -0.9
1,585,688 + -0.6
1,585,688 + -0.1
1,585,689 - -1.1
1,585,690 + -0.1
1,585,690 + -0.4
1,585,690 + -1.3
1,585,690 + -0.2
1,585,690 + +0.1
1,585,690 + -1.6
1,585,690 + +0.6
1,585,690 + -0.3
1,587,299 + MPMX19_01516 0.12 +0.1
1,587,299 + MPMX19_01516 0.12 -0.5
1,587,299 + MPMX19_01516 0.12 +0.5
1,587,299 + MPMX19_01516 0.12 -1.1
1,587,299 + MPMX19_01516 0.12 -2.7
1,587,299 + MPMX19_01516 0.12 -1.5
1,587,299 + MPMX19_01516 0.12 +0.1
1,587,299 + MPMX19_01516 0.12 -0.4
1,587,299 + MPMX19_01516 0.12 -1.5
1,587,299 + MPMX19_01516 0.12 -0.4
1,587,299 + MPMX19_01516 0.12 -1.0
1,587,299 + MPMX19_01516 0.12 -2.0
1,587,299 + MPMX19_01516 0.12 -0.8
1,587,300 - MPMX19_01516 0.12 -0.5
1,587,300 - MPMX19_01516 0.12 -0.3
1,587,300 - MPMX19_01516 0.12 -0.9
1,587,300 - MPMX19_01516 0.12 -0.1
1,587,300 - MPMX19_01516 0.12 -0.6
1,587,300 - MPMX19_01516 0.12 -0.6
1,587,300 - MPMX19_01516 0.12 -0.6
1,587,300 - MPMX19_01516 0.12 -0.9
1,587,413 + MPMX19_01516 0.21 +0.1
1,587,413 + MPMX19_01516 0.21 +0.9
1,587,413 + MPMX19_01516 0.21 +0.9
1,587,413 + MPMX19_01516 0.21 +0.1
1,587,414 - MPMX19_01516 0.22 -0.3
1,587,414 - MPMX19_01516 0.22 -0.8
1,587,414 - MPMX19_01516 0.22 -0.9
1,587,414 - MPMX19_01516 0.22 +0.3
1,587,414 - MPMX19_01516 0.22 -0.4
1,587,414 - MPMX19_01516 0.22 -0.3
1,587,414 - MPMX19_01516 0.22 +0.5
1,587,414 - MPMX19_01516 0.22 -0.2
1,587,512 + MPMX19_01516 0.29 -1.2
1,587,512 + MPMX19_01516 0.29 +1.1
1,587,512 + MPMX19_01516 0.29 +0.6
1,587,512 + MPMX19_01516 0.29 +0.4
1,587,512 + MPMX19_01516 0.29 -0.4
1,587,512 + MPMX19_01516 0.29 +0.4
1,587,512 + MPMX19_01516 0.29 +0.6
1,587,512 + MPMX19_01516 0.29 -0.7
1,587,512 + MPMX19_01516 0.29 -0.9
1,587,512 + MPMX19_01516 0.29 -0.8
1,587,513 - MPMX19_01516 0.30 -1.0
1,587,513 - MPMX19_01516 0.30 -1.9
1,587,513 - MPMX19_01516 0.30 +1.1
1,587,513 - MPMX19_01516 0.30 -0.1
1,587,513 - MPMX19_01516 0.30 +0.1
1,587,513 - MPMX19_01516 0.30 -1.1
1,587,513 - MPMX19_01516 0.30 -0.0
1,587,513 - MPMX19_01516 0.30 -1.4
1,587,667 + MPMX19_01516 0.42 -0.6
1,587,667 + MPMX19_01516 0.42 +0.2
1,587,667 + MPMX19_01516 0.42 -0.6
1,587,667 + MPMX19_01516 0.42 -0.6
1,587,667 + MPMX19_01516 0.42 -1.4
1,587,668 - MPMX19_01516 0.42 -0.3
1,587,668 - MPMX19_01516 0.42 -0.3
1,587,941 + MPMX19_01516 0.64 -0.1
1,587,941 + MPMX19_01516 0.64 -1.4
1,587,941 + MPMX19_01516 0.64 -0.7
1,587,941 + MPMX19_01516 0.64 +0.2
1,587,941 + MPMX19_01516 0.64 -0.3
1,587,941 + MPMX19_01516 0.64 -0.9
1,587,941 + MPMX19_01516 0.64 -0.0
1,587,941 + MPMX19_01516 0.64 -0.3
1,587,942 - MPMX19_01516 0.64 +0.3
1,587,942 - MPMX19_01516 0.64 -0.4
1,587,942 - MPMX19_01516 0.64 +0.1
1,587,942 - MPMX19_01516 0.64 +1.1
1,588,010 + MPMX19_01516 0.70 -1.0
1,588,010 + MPMX19_01516 0.70 -1.7
1,588,010 + MPMX19_01516 0.70 +0.4
1,588,010 + MPMX19_01516 0.70 -0.3
1,588,010 + MPMX19_01516 0.70 -1.7
1,588,010 + MPMX19_01516 0.70 -1.1
1,588,010 + MPMX19_01516 0.70 -0.3
1,588,010 + MPMX19_01516 0.70 -0.0
1,588,010 + MPMX19_01516 0.70 -1.1
1,588,010 + MPMX19_01516 0.70 -1.1
1,588,010 + MPMX19_01516 0.70 -1.0
1,588,010 + MPMX19_01516 0.70 +1.0
1,588,010 + MPMX19_01516 0.70 -0.5
1,588,010 + MPMX19_01516 0.70 -1.9
1,588,010 + MPMX19_01516 0.70 -0.5
1,588,010 + MPMX19_01516 0.70 -1.3
1,588,010 + MPMX19_01516 0.70 +0.1
1,588,010 + MPMX19_01516 0.70 -0.0
1,588,010 + MPMX19_01516 0.70 +0.1
1,588,010 + MPMX19_01516 0.70 +1.2
1,588,010 + MPMX19_01516 0.70 +0.6
1,588,010 + MPMX19_01516 0.70 -1.1
1,588,010 + MPMX19_01516 0.70 +0.9
1,588,011 - MPMX19_01516 0.70 -0.1
1,588,011 - MPMX19_01516 0.70 +0.6
1,588,011 - MPMX19_01516 0.70 +0.1
1,588,011 - MPMX19_01516 0.70 -0.3
1,588,011 - MPMX19_01516 0.70 -0.3
1,588,011 - MPMX19_01516 0.70 +0.6
1,588,011 - MPMX19_01516 0.70 +0.6
1,588,011 - MPMX19_01516 0.70 -1.6
1,588,011 - MPMX19_01516 0.70 +2.3
1,588,011 - MPMX19_01516 0.70 -0.8
1,588,011 - MPMX19_01516 0.70 -1.3
1,588,011 - MPMX19_01516 0.70 +0.3
1,588,011 - MPMX19_01516 0.70 +1.1
1,588,011 - MPMX19_01516 0.70 +2.1

Or see this region's nucleotide sequence