Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01239 and MPMX19_01240 are separated by 222 nucleotides MPMX19_01240 and MPMX19_01241 are separated by 188 nucleotides MPMX19_01241 and MPMX19_01242 are separated by 305 nucleotides
MPMX19_01239: MPMX19_01239 - CTP synthase, at 1,288,855 to 1,290,486
_01239
MPMX19_01240: MPMX19_01240 - Protein-export membrane protein SecG, at 1,290,709 to 1,291,032
_01240
MPMX19_01241: MPMX19_01241 - Triosephosphate isomerase, at 1,291,221 to 1,291,976
_01241
MPMX19_01242: MPMX19_01242 - hypothetical protein, at 1,292,282 to 1,293,238
_01242
Position (kb) 1291
1292 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1291.068 kb on - strand at 1291.068 kb on - strand at 1291.068 kb on - strand at 1291.088 kb on - strand at 1291.088 kb on - strand at 1291.118 kb on - strand at 1291.118 kb on - strand at 1291.118 kb on - strand at 1291.151 kb on + strand at 1291.152 kb on - strand at 1291.152 kb on - strand at 1291.163 kb on - strand at 1291.163 kb on - strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.002 kb on + strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.003 kb on - strand at 1292.004 kb on + strand at 1292.004 kb on + strand at 1292.004 kb on + strand at 1292.005 kb on - strand at 1292.005 kb on - strand at 1292.005 kb on - strand at 1292.005 kb on - strand at 1292.005 kb on - strand at 1292.005 kb on - strand at 1292.050 kb on + strand at 1292.050 kb on + strand at 1292.050 kb on + strand at 1292.051 kb on - strand at 1292.051 kb on - strand at 1292.109 kb on + strand at 1292.109 kb on + strand at 1292.109 kb on + strand at 1292.109 kb on + strand at 1292.109 kb on + strand at 1292.110 kb on - strand at 1292.110 kb on - strand at 1292.110 kb on - strand at 1292.110 kb on - strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.123 kb on + strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.124 kb on - strand at 1292.197 kb on + strand at 1292.197 kb on + strand at 1292.197 kb on + strand at 1292.197 kb on + strand at 1292.197 kb on + strand at 1292.197 kb on + strand at 1292.197 kb on + strand at 1292.198 kb on - strand at 1292.198 kb on - strand at 1292.198 kb on - strand at 1292.198 kb on - strand at 1292.198 kb on - strand at 1292.198 kb on - strand at 1292.198 kb on - strand at 1292.198 kb on - strand at 1292.198 kb on - strand at 1292.198 kb on - strand at 1292.233 kb on + strand at 1292.233 kb on + strand at 1292.233 kb on + strand at 1292.233 kb on + strand at 1292.234 kb on - strand at 1292.234 kb on - strand at 1292.234 kb on - strand at 1292.234 kb on - strand at 1292.234 kb on - strand at 1292.234 kb on - strand at 1292.234 kb on - strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.360 kb on + strand at 1292.361 kb on - strand at 1292.361 kb on - strand at 1292.361 kb on - strand at 1292.361 kb on - strand at 1292.361 kb on - strand at 1292.361 kb on - strand at 1292.361 kb on - strand at 1292.393 kb on + strand, within MPMX19_01242 at 1292.393 kb on + strand, within MPMX19_01242 at 1292.393 kb on + strand, within MPMX19_01242 at 1292.393 kb on + strand, within MPMX19_01242 at 1292.393 kb on + strand, within MPMX19_01242 at 1292.393 kb on + strand, within MPMX19_01242 at 1292.393 kb on + strand, within MPMX19_01242 at 1292.393 kb on + strand, within MPMX19_01242 at 1292.393 kb on + strand, within MPMX19_01242 at 1292.393 kb on + strand, within MPMX19_01242 at 1292.394 kb on - strand, within MPMX19_01242 at 1292.394 kb on - strand, within MPMX19_01242 at 1292.621 kb on + strand, within MPMX19_01242 at 1292.621 kb on + strand, within MPMX19_01242 at 1292.621 kb on + strand, within MPMX19_01242 at 1292.621 kb on + strand, within MPMX19_01242 at 1292.621 kb on + strand, within MPMX19_01242 at 1292.621 kb on + strand, within MPMX19_01242 at 1292.621 kb on + strand, within MPMX19_01242 at 1292.621 kb on + strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.622 kb on - strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.732 kb on + strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242 at 1292.733 kb on - strand, within MPMX19_01242
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 1,291,068 - -0.5 1,291,068 - -0.4 1,291,068 - -0.8 1,291,088 - -1.3 1,291,088 - -0.6 1,291,118 - -0.3 1,291,118 - -0.9 1,291,118 - -0.8 1,291,151 + -2.0 1,291,152 - -0.3 1,291,152 - -1.3 1,291,163 - -0.9 1,291,163 - +0.1 1,292,002 + -0.6 1,292,002 + +0.9 1,292,002 + -1.4 1,292,002 + -0.5 1,292,002 + +0.7 1,292,002 + -0.1 1,292,002 + -0.0 1,292,002 + -0.3 1,292,002 + +1.7 1,292,002 + -1.6 1,292,002 + +0.7 1,292,002 + +0.6 1,292,002 + +0.2 1,292,002 + +0.7 1,292,002 + -0.4 1,292,003 - -1.0 1,292,003 - -1.0 1,292,003 - -0.5 1,292,003 - -0.8 1,292,003 - -0.6 1,292,003 - +1.1 1,292,003 - +0.6 1,292,003 - -1.5 1,292,003 - +0.4 1,292,003 - -0.4 1,292,003 - -0.1 1,292,003 - -1.2 1,292,003 - -1.1 1,292,003 - -0.3 1,292,003 - +0.3 1,292,003 - -0.5 1,292,003 - -0.9 1,292,003 - -1.3 1,292,003 - -1.6 1,292,003 - -0.3 1,292,003 - -0.2 1,292,003 - +0.2 1,292,003 - +0.3 1,292,003 - +0.0 1,292,004 + -0.5 1,292,004 + -0.9 1,292,004 + +1.0 1,292,005 - -0.0 1,292,005 - -0.5 1,292,005 - -0.5 1,292,005 - -1.3 1,292,005 - -1.5 1,292,005 - +0.2 1,292,050 + +0.1 1,292,050 + +0.1 1,292,050 + -2.2 1,292,051 - +0.3 1,292,051 - +0.5 1,292,109 + -0.8 1,292,109 + -2.2 1,292,109 + -0.0 1,292,109 + -0.8 1,292,109 + -0.9 1,292,110 - -0.4 1,292,110 - +0.2 1,292,110 - -0.4 1,292,110 - +0.4 1,292,123 + +1.9 1,292,123 + -0.2 1,292,123 + -0.4 1,292,123 + -1.0 1,292,123 + +0.4 1,292,123 + +0.1 1,292,123 + -1.1 1,292,123 + -0.3 1,292,123 + -0.1 1,292,123 + -0.5 1,292,123 + -0.3 1,292,123 + +1.1 1,292,123 + -0.3 1,292,123 + -2.4 1,292,123 + +0.9 1,292,123 + +0.7 1,292,123 + -0.4 1,292,123 + -0.0 1,292,123 + -1.6 1,292,123 + +0.3 1,292,123 + -2.3 1,292,123 + -0.9 1,292,124 - -0.6 1,292,124 - -0.6 1,292,124 - -0.7 1,292,124 - -2.0 1,292,124 - -0.7 1,292,124 - +0.7 1,292,124 - -0.3 1,292,124 - -1.8 1,292,124 - -0.3 1,292,124 - -0.6 1,292,124 - -0.0 1,292,124 - +1.3 1,292,124 - -1.6 1,292,124 - -0.9 1,292,124 - -0.9 1,292,124 - +0.7 1,292,124 - -1.3 1,292,124 - +1.4 1,292,124 - -0.8 1,292,124 - +0.0 1,292,124 - -1.1 1,292,124 - -0.0 1,292,124 - -0.9 1,292,124 - +1.0 1,292,124 - +0.4 1,292,124 - +0.7 1,292,124 - -1.5 1,292,124 - -1.3 1,292,124 - -0.6 1,292,197 + -1.2 1,292,197 + +1.7 1,292,197 + -1.1 1,292,197 + +0.0 1,292,197 + -0.6 1,292,197 + +0.1 1,292,197 + +0.5 1,292,198 - +0.9 1,292,198 - -1.9 1,292,198 - +1.4 1,292,198 - -1.8 1,292,198 - +0.3 1,292,198 - +0.7 1,292,198 - +1.1 1,292,198 - -0.1 1,292,198 - +0.7 1,292,198 - -0.1 1,292,233 + -0.5 1,292,233 + +0.3 1,292,233 + -0.1 1,292,233 + +0.8 1,292,234 - -0.7 1,292,234 - -1.3 1,292,234 - -0.6 1,292,234 - -0.6 1,292,234 - -0.2 1,292,234 - -1.1 1,292,234 - -0.6 1,292,360 + +0.6 1,292,360 + -1.9 1,292,360 + +0.1 1,292,360 + -1.3 1,292,360 + +0.2 1,292,360 + -0.6 1,292,360 + -0.5 1,292,360 + -0.3 1,292,360 + -0.7 1,292,360 + -0.4 1,292,360 + -0.5 1,292,360 + +0.1 1,292,360 + +1.0 1,292,360 + +1.1 1,292,360 + -1.3 1,292,361 - +0.3 1,292,361 - +0.2 1,292,361 - +0.6 1,292,361 - -1.5 1,292,361 - +0.5 1,292,361 - -0.3 1,292,361 - -0.8 1,292,393 + MPMX19_01242 0.12 -0.2 1,292,393 + MPMX19_01242 0.12 -0.0 1,292,393 + MPMX19_01242 0.12 -0.3 1,292,393 + MPMX19_01242 0.12 -0.6 1,292,393 + MPMX19_01242 0.12 +0.1 1,292,393 + MPMX19_01242 0.12 +0.9 1,292,393 + MPMX19_01242 0.12 -0.9 1,292,393 + MPMX19_01242 0.12 +0.4 1,292,393 + MPMX19_01242 0.12 -0.2 1,292,393 + MPMX19_01242 0.12 -0.3 1,292,394 - MPMX19_01242 0.12 +0.4 1,292,394 - MPMX19_01242 0.12 +0.4 1,292,621 + MPMX19_01242 0.35 -0.4 1,292,621 + MPMX19_01242 0.35 -1.0 1,292,621 + MPMX19_01242 0.35 -2.1 1,292,621 + MPMX19_01242 0.35 +1.1 1,292,621 + MPMX19_01242 0.35 -0.6 1,292,621 + MPMX19_01242 0.35 -0.4 1,292,621 + MPMX19_01242 0.35 -0.1 1,292,621 + MPMX19_01242 0.35 +0.5 1,292,622 - MPMX19_01242 0.36 -1.6 1,292,622 - MPMX19_01242 0.36 -0.2 1,292,622 - MPMX19_01242 0.36 -0.4 1,292,622 - MPMX19_01242 0.36 -1.1 1,292,622 - MPMX19_01242 0.36 +0.1 1,292,622 - MPMX19_01242 0.36 -0.8 1,292,622 - MPMX19_01242 0.36 +0.9 1,292,622 - MPMX19_01242 0.36 -0.8 1,292,622 - MPMX19_01242 0.36 -1.8 1,292,622 - MPMX19_01242 0.36 +0.8 1,292,622 - MPMX19_01242 0.36 +0.1 1,292,732 + MPMX19_01242 0.47 +0.9 1,292,732 + MPMX19_01242 0.47 -0.1 1,292,732 + MPMX19_01242 0.47 -0.6 1,292,732 + MPMX19_01242 0.47 -0.0 1,292,732 + MPMX19_01242 0.47 -0.6 1,292,732 + MPMX19_01242 0.47 -0.2 1,292,732 + MPMX19_01242 0.47 +0.6 1,292,732 + MPMX19_01242 0.47 -0.8 1,292,732 + MPMX19_01242 0.47 -1.4 1,292,732 + MPMX19_01242 0.47 +0.9 1,292,732 + MPMX19_01242 0.47 -0.6 1,292,732 + MPMX19_01242 0.47 -2.6 1,292,732 + MPMX19_01242 0.47 -0.5 1,292,732 + MPMX19_01242 0.47 -1.0 1,292,732 + MPMX19_01242 0.47 -0.8 1,292,732 + MPMX19_01242 0.47 +0.6 1,292,732 + MPMX19_01242 0.47 -2.0 1,292,732 + MPMX19_01242 0.47 +1.1 1,292,732 + MPMX19_01242 0.47 +0.7 1,292,732 + MPMX19_01242 0.47 -1.3 1,292,732 + MPMX19_01242 0.47 +0.2 1,292,732 + MPMX19_01242 0.47 +0.0 1,292,732 + MPMX19_01242 0.47 +0.7 1,292,732 + MPMX19_01242 0.47 +1.0 1,292,732 + MPMX19_01242 0.47 +0.4 1,292,732 + MPMX19_01242 0.47 -0.8 1,292,732 + MPMX19_01242 0.47 -0.9 1,292,732 + MPMX19_01242 0.47 -0.8 1,292,732 + MPMX19_01242 0.47 -0.1 1,292,733 - MPMX19_01242 0.47 +0.4 1,292,733 - MPMX19_01242 0.47 -0.9 1,292,733 - MPMX19_01242 0.47 +0.4 1,292,733 - MPMX19_01242 0.47 -0.8 1,292,733 - MPMX19_01242 0.47 -0.4 1,292,733 - MPMX19_01242 0.47 -0.6 1,292,733 - MPMX19_01242 0.47 +0.7 1,292,733 - MPMX19_01242 0.47 +0.5 1,292,733 - MPMX19_01242 0.47 -0.8 1,292,733 - MPMX19_01242 0.47 -0.9 1,292,733 - MPMX19_01242 0.47 -1.5 1,292,733 - MPMX19_01242 0.47 -1.5 1,292,733 - MPMX19_01242 0.47 +0.7 1,292,733 - MPMX19_01242 0.47 -1.3 1,292,733 - MPMX19_01242 0.47 -0.5 1,292,733 - MPMX19_01242 0.47 -0.0
Or see this region's nucleotide sequence