Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01239

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01238 and MPMX19_01239 are separated by 165 nucleotidesMPMX19_01239 and MPMX19_01240 are separated by 222 nucleotidesMPMX19_01240 and MPMX19_01241 are separated by 188 nucleotides MPMX19_01238: MPMX19_01238 - Esterase EstA, at 1,286,860 to 1,288,689 _01238 MPMX19_01239: MPMX19_01239 - CTP synthase, at 1,288,855 to 1,290,486 _01239 MPMX19_01240: MPMX19_01240 - Protein-export membrane protein SecG, at 1,290,709 to 1,291,032 _01240 MPMX19_01241: MPMX19_01241 - Triosephosphate isomerase, at 1,291,221 to 1,291,976 _01241 Position (kb) 1288 1289 1290 1291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.878 kb on + strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1287.879 kb on - strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.013 kb on + strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.014 kb on - strand, within MPMX19_01238at 1288.036 kb on + strand, within MPMX19_01238at 1288.037 kb on - strand, within MPMX19_01238at 1288.037 kb on - strand, within MPMX19_01238at 1288.074 kb on + strand, within MPMX19_01238at 1288.074 kb on + strand, within MPMX19_01238at 1288.074 kb on + strand, within MPMX19_01238at 1288.074 kb on + strand, within MPMX19_01238at 1288.074 kb on + strand, within MPMX19_01238at 1288.074 kb on + strand, within MPMX19_01238at 1288.074 kb on + strand, within MPMX19_01238at 1288.075 kb on - strand, within MPMX19_01238at 1288.075 kb on - strand, within MPMX19_01238at 1288.075 kb on - strand, within MPMX19_01238at 1288.076 kb on + strand, within MPMX19_01238at 1288.076 kb on + strand, within MPMX19_01238at 1288.076 kb on + strand, within MPMX19_01238at 1288.076 kb on + strand, within MPMX19_01238at 1288.076 kb on + strand, within MPMX19_01238at 1288.076 kb on + strand, within MPMX19_01238at 1288.077 kb on - strand, within MPMX19_01238at 1288.077 kb on - strand, within MPMX19_01238at 1288.077 kb on - strand, within MPMX19_01238at 1288.077 kb on - strand, within MPMX19_01238at 1288.077 kb on - strand, within MPMX19_01238at 1288.077 kb on - strand, within MPMX19_01238at 1288.095 kb on + strand, within MPMX19_01238at 1288.095 kb on + strand, within MPMX19_01238at 1288.095 kb on + strand, within MPMX19_01238at 1288.095 kb on + strand, within MPMX19_01238at 1288.095 kb on + strand, within MPMX19_01238at 1288.095 kb on + strand, within MPMX19_01238at 1288.095 kb on + strand, within MPMX19_01238at 1288.096 kb on - strand, within MPMX19_01238at 1288.096 kb on - strand, within MPMX19_01238at 1288.096 kb on - strand, within MPMX19_01238at 1288.096 kb on - strand, within MPMX19_01238at 1288.096 kb on - strand, within MPMX19_01238at 1288.096 kb on - strand, within MPMX19_01238at 1288.096 kb on - strand, within MPMX19_01238at 1288.096 kb on - strand, within MPMX19_01238at 1288.096 kb on - strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.307 kb on + strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.308 kb on - strand, within MPMX19_01238at 1288.349 kb on + strand, within MPMX19_01238at 1288.350 kb on - strand, within MPMX19_01238at 1288.350 kb on - strand, within MPMX19_01238at 1288.350 kb on - strand, within MPMX19_01238at 1288.445 kb on + strand, within MPMX19_01238at 1288.445 kb on + strand, within MPMX19_01238at 1288.445 kb on + strand, within MPMX19_01238at 1288.445 kb on + strand, within MPMX19_01238at 1288.445 kb on + strand, within MPMX19_01238at 1288.446 kb on - strand, within MPMX19_01238at 1288.446 kb on - strand, within MPMX19_01238at 1288.446 kb on - strand, within MPMX19_01238at 1288.446 kb on - strand, within MPMX19_01238at 1288.446 kb on - strand, within MPMX19_01238at 1288.446 kb on - strand, within MPMX19_01238at 1288.446 kb on - strand, within MPMX19_01238at 1288.598 kb on + strandat 1288.613 kb on + strandat 1288.613 kb on + strandat 1288.613 kb on + strandat 1288.613 kb on + strandat 1288.613 kb on + strandat 1288.613 kb on + strandat 1288.613 kb on + strandat 1288.614 kb on - strandat 1288.614 kb on - strandat 1288.614 kb on - strandat 1288.614 kb on - strandat 1288.614 kb on - strandat 1288.614 kb on - strandat 1288.614 kb on - strandat 1288.614 kb on - strandat 1288.614 kb on - strandat 1288.614 kb on - strandat 1288.750 kb on - strandat 1288.774 kb on + strandat 1288.774 kb on + strandat 1288.774 kb on + strandat 1288.775 kb on - strandat 1288.775 kb on - strandat 1288.775 kb on - strandat 1288.775 kb on - strandat 1288.775 kb on - strandat 1291.068 kb on - strandat 1291.068 kb on - strandat 1291.068 kb on - strandat 1291.088 kb on - strandat 1291.088 kb on - strandat 1291.118 kb on - strandat 1291.118 kb on - strandat 1291.118 kb on - strandat 1291.151 kb on + strandat 1291.152 kb on - strandat 1291.152 kb on - strandat 1291.163 kb on - strandat 1291.163 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,287,878 + MPMX19_01238 0.56 -1.0
1,287,878 + MPMX19_01238 0.56 -1.5
1,287,878 + MPMX19_01238 0.56 -0.5
1,287,878 + MPMX19_01238 0.56 +1.0
1,287,878 + MPMX19_01238 0.56 +1.2
1,287,878 + MPMX19_01238 0.56 -0.8
1,287,878 + MPMX19_01238 0.56 +0.5
1,287,878 + MPMX19_01238 0.56 -0.1
1,287,878 + MPMX19_01238 0.56 +0.1
1,287,878 + MPMX19_01238 0.56 -0.3
1,287,878 + MPMX19_01238 0.56 -0.2
1,287,878 + MPMX19_01238 0.56 +1.0
1,287,878 + MPMX19_01238 0.56 -0.2
1,287,878 + MPMX19_01238 0.56 +0.0
1,287,879 - MPMX19_01238 0.56 -1.0
1,287,879 - MPMX19_01238 0.56 -0.0
1,287,879 - MPMX19_01238 0.56 -0.3
1,287,879 - MPMX19_01238 0.56 -2.7
1,287,879 - MPMX19_01238 0.56 -0.2
1,287,879 - MPMX19_01238 0.56 -2.2
1,287,879 - MPMX19_01238 0.56 -1.3
1,287,879 - MPMX19_01238 0.56 +0.8
1,287,879 - MPMX19_01238 0.56 +0.9
1,287,879 - MPMX19_01238 0.56 +0.1
1,287,879 - MPMX19_01238 0.56 +0.3
1,287,879 - MPMX19_01238 0.56 +2.1
1,287,879 - MPMX19_01238 0.56 -0.9
1,287,879 - MPMX19_01238 0.56 -1.3
1,287,879 - MPMX19_01238 0.56 -0.6
1,288,013 + MPMX19_01238 0.63 +0.6
1,288,013 + MPMX19_01238 0.63 -2.0
1,288,013 + MPMX19_01238 0.63 -1.0
1,288,013 + MPMX19_01238 0.63 +0.4
1,288,013 + MPMX19_01238 0.63 -1.0
1,288,013 + MPMX19_01238 0.63 -0.6
1,288,013 + MPMX19_01238 0.63 +0.2
1,288,013 + MPMX19_01238 0.63 +0.3
1,288,013 + MPMX19_01238 0.63 +0.4
1,288,013 + MPMX19_01238 0.63 -1.7
1,288,013 + MPMX19_01238 0.63 -1.5
1,288,013 + MPMX19_01238 0.63 +0.3
1,288,013 + MPMX19_01238 0.63 +0.3
1,288,013 + MPMX19_01238 0.63 -1.2
1,288,013 + MPMX19_01238 0.63 +0.1
1,288,013 + MPMX19_01238 0.63 -1.8
1,288,013 + MPMX19_01238 0.63 -0.3
1,288,013 + MPMX19_01238 0.63 -1.1
1,288,013 + MPMX19_01238 0.63 -0.9
1,288,013 + MPMX19_01238 0.63 -1.0
1,288,013 + MPMX19_01238 0.63 +1.2
1,288,014 - MPMX19_01238 0.63 +0.1
1,288,014 - MPMX19_01238 0.63 +0.7
1,288,014 - MPMX19_01238 0.63 +0.9
1,288,014 - MPMX19_01238 0.63 +0.1
1,288,014 - MPMX19_01238 0.63 -0.7
1,288,014 - MPMX19_01238 0.63 -0.2
1,288,014 - MPMX19_01238 0.63 -0.4
1,288,014 - MPMX19_01238 0.63 +1.4
1,288,014 - MPMX19_01238 0.63 -1.6
1,288,014 - MPMX19_01238 0.63 +0.3
1,288,014 - MPMX19_01238 0.63 -0.9
1,288,014 - MPMX19_01238 0.63 +0.4
1,288,014 - MPMX19_01238 0.63 -0.3
1,288,014 - MPMX19_01238 0.63 +0.2
1,288,014 - MPMX19_01238 0.63 -0.3
1,288,014 - MPMX19_01238 0.63 -1.8
1,288,014 - MPMX19_01238 0.63 +0.4
1,288,014 - MPMX19_01238 0.63 +0.1
1,288,014 - MPMX19_01238 0.63 -0.1
1,288,014 - MPMX19_01238 0.63 -0.8
1,288,014 - MPMX19_01238 0.63 -1.1
1,288,014 - MPMX19_01238 0.63 -0.1
1,288,014 - MPMX19_01238 0.63 +0.5
1,288,014 - MPMX19_01238 0.63 -1.5
1,288,014 - MPMX19_01238 0.63 -0.8
1,288,014 - MPMX19_01238 0.63 -1.6
1,288,014 - MPMX19_01238 0.63 +0.5
1,288,014 - MPMX19_01238 0.63 -0.3
1,288,014 - MPMX19_01238 0.63 +0.6
1,288,014 - MPMX19_01238 0.63 +1.5
1,288,014 - MPMX19_01238 0.63 -2.0
1,288,014 - MPMX19_01238 0.63 -1.1
1,288,036 + MPMX19_01238 0.64 +0.4
1,288,037 - MPMX19_01238 0.64 +0.7
1,288,037 - MPMX19_01238 0.64 -1.6
1,288,074 + MPMX19_01238 0.66 -0.6
1,288,074 + MPMX19_01238 0.66 -1.8
1,288,074 + MPMX19_01238 0.66 +0.6
1,288,074 + MPMX19_01238 0.66 -0.3
1,288,074 + MPMX19_01238 0.66 -1.9
1,288,074 + MPMX19_01238 0.66 +0.7
1,288,074 + MPMX19_01238 0.66 -0.2
1,288,075 - MPMX19_01238 0.66 +0.3
1,288,075 - MPMX19_01238 0.66 -0.3
1,288,075 - MPMX19_01238 0.66 +0.6
1,288,076 + MPMX19_01238 0.66 -0.8
1,288,076 + MPMX19_01238 0.66 +0.1
1,288,076 + MPMX19_01238 0.66 +0.7
1,288,076 + MPMX19_01238 0.66 +0.4
1,288,076 + MPMX19_01238 0.66 -0.1
1,288,076 + MPMX19_01238 0.66 +0.7
1,288,077 - MPMX19_01238 0.67 -1.7
1,288,077 - MPMX19_01238 0.67 +0.5
1,288,077 - MPMX19_01238 0.67 -0.6
1,288,077 - MPMX19_01238 0.67 +0.5
1,288,077 - MPMX19_01238 0.67 +0.4
1,288,077 - MPMX19_01238 0.67 -0.8
1,288,095 + MPMX19_01238 0.67 +0.7
1,288,095 + MPMX19_01238 0.67 -0.2
1,288,095 + MPMX19_01238 0.67 -0.5
1,288,095 + MPMX19_01238 0.67 -1.2
1,288,095 + MPMX19_01238 0.67 +1.2
1,288,095 + MPMX19_01238 0.67 -1.3
1,288,095 + MPMX19_01238 0.67 -1.3
1,288,096 - MPMX19_01238 0.68 +0.0
1,288,096 - MPMX19_01238 0.68 -1.1
1,288,096 - MPMX19_01238 0.68 +0.7
1,288,096 - MPMX19_01238 0.68 -1.6
1,288,096 - MPMX19_01238 0.68 +1.0
1,288,096 - MPMX19_01238 0.68 +1.7
1,288,096 - MPMX19_01238 0.68 -2.5
1,288,096 - MPMX19_01238 0.68 -0.4
1,288,096 - MPMX19_01238 0.68 -0.1
1,288,307 + MPMX19_01238 0.79 -0.0
1,288,307 + MPMX19_01238 0.79 -0.1
1,288,307 + MPMX19_01238 0.79 +0.1
1,288,307 + MPMX19_01238 0.79 -0.3
1,288,307 + MPMX19_01238 0.79 +0.1
1,288,307 + MPMX19_01238 0.79 -0.0
1,288,307 + MPMX19_01238 0.79 -0.5
1,288,307 + MPMX19_01238 0.79 +0.4
1,288,307 + MPMX19_01238 0.79 -0.3
1,288,307 + MPMX19_01238 0.79 -0.1
1,288,307 + MPMX19_01238 0.79 -0.3
1,288,308 - MPMX19_01238 0.79 +0.5
1,288,308 - MPMX19_01238 0.79 +0.3
1,288,308 - MPMX19_01238 0.79 -1.1
1,288,308 - MPMX19_01238 0.79 -1.7
1,288,308 - MPMX19_01238 0.79 +0.8
1,288,308 - MPMX19_01238 0.79 -0.2
1,288,308 - MPMX19_01238 0.79 -0.3
1,288,308 - MPMX19_01238 0.79 -1.3
1,288,308 - MPMX19_01238 0.79 -1.5
1,288,308 - MPMX19_01238 0.79 -0.5
1,288,349 + MPMX19_01238 0.81 -1.5
1,288,350 - MPMX19_01238 0.81 +0.2
1,288,350 - MPMX19_01238 0.81 +0.6
1,288,350 - MPMX19_01238 0.81 -0.3
1,288,445 + MPMX19_01238 0.87 -1.6
1,288,445 + MPMX19_01238 0.87 -0.0
1,288,445 + MPMX19_01238 0.87 -2.2
1,288,445 + MPMX19_01238 0.87 -0.3
1,288,445 + MPMX19_01238 0.87 -1.1
1,288,446 - MPMX19_01238 0.87 -1.5
1,288,446 - MPMX19_01238 0.87 +0.7
1,288,446 - MPMX19_01238 0.87 -1.5
1,288,446 - MPMX19_01238 0.87 -1.8
1,288,446 - MPMX19_01238 0.87 +0.7
1,288,446 - MPMX19_01238 0.87 +0.8
1,288,446 - MPMX19_01238 0.87 +1.1
1,288,598 + -1.8
1,288,613 + -0.5
1,288,613 + +0.4
1,288,613 + -0.6
1,288,613 + -0.2
1,288,613 + +0.3
1,288,613 + -0.4
1,288,613 + -0.5
1,288,614 - -0.7
1,288,614 - -0.8
1,288,614 - +0.1
1,288,614 - -1.1
1,288,614 - +1.3
1,288,614 - +0.4
1,288,614 - -0.7
1,288,614 - -1.5
1,288,614 - -0.7
1,288,614 - +1.0
1,288,750 - +1.2
1,288,774 + -0.3
1,288,774 + -0.7
1,288,774 + -0.3
1,288,775 - -2.8
1,288,775 - +0.0
1,288,775 - -1.5
1,288,775 - -1.1
1,288,775 - +0.5
1,291,068 - -0.5
1,291,068 - -0.4
1,291,068 - -0.8
1,291,088 - -1.3
1,291,088 - -0.6
1,291,118 - -0.3
1,291,118 - -0.9
1,291,118 - -0.8
1,291,151 + -2.0
1,291,152 - -0.3
1,291,152 - -1.3
1,291,163 - -0.9
1,291,163 - +0.1

Or see this region's nucleotide sequence