Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01202 and MPMX19_01203 are separated by 109 nucleotides MPMX19_01203 and MPMX19_01204 are separated by 237 nucleotides
MPMX19_01202: MPMX19_01202 - Ribosomal RNA large subunit methyltransferase J, at 1,252,195 to 1,253,037
_01202
MPMX19_01203: MPMX19_01203 - hypothetical protein, at 1,253,147 to 1,253,809
_01203
MPMX19_01204: MPMX19_01204 - hypothetical protein, at 1,254,047 to 1,255,042
_01204
Position (kb)
1253
1254 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1252.182 kb on + strand at 1252.209 kb on + strand at 1252.209 kb on + strand at 1252.333 kb on + strand, within MPMX19_01202 at 1252.334 kb on - strand, within MPMX19_01202 at 1252.432 kb on + strand, within MPMX19_01202 at 1252.432 kb on + strand, within MPMX19_01202 at 1252.432 kb on + strand, within MPMX19_01202 at 1252.432 kb on + strand, within MPMX19_01202 at 1252.433 kb on - strand, within MPMX19_01202 at 1252.445 kb on + strand, within MPMX19_01202 at 1252.445 kb on + strand, within MPMX19_01202 at 1252.446 kb on - strand, within MPMX19_01202 at 1252.446 kb on - strand, within MPMX19_01202 at 1252.480 kb on + strand, within MPMX19_01202 at 1252.624 kb on + strand, within MPMX19_01202 at 1252.625 kb on - strand, within MPMX19_01202 at 1252.625 kb on - strand, within MPMX19_01202 at 1252.625 kb on - strand, within MPMX19_01202 at 1252.625 kb on - strand, within MPMX19_01202 at 1252.778 kb on - strand, within MPMX19_01202 at 1253.035 kb on + strand at 1253.035 kb on + strand at 1253.036 kb on - strand at 1253.036 kb on - strand at 1253.304 kb on + strand, within MPMX19_01203 at 1253.304 kb on + strand, within MPMX19_01203 at 1253.304 kb on + strand, within MPMX19_01203 at 1253.304 kb on + strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.305 kb on - strand, within MPMX19_01203 at 1253.560 kb on + strand, within MPMX19_01203 at 1253.647 kb on + strand, within MPMX19_01203 at 1253.647 kb on + strand, within MPMX19_01203 at 1253.648 kb on - strand, within MPMX19_01203 at 1253.803 kb on + strand at 1253.803 kb on + strand at 1253.804 kb on - strand at 1253.828 kb on - strand at 1253.875 kb on + strand at 1253.876 kb on - strand at 1253.876 kb on - strand at 1253.876 kb on - strand at 1253.904 kb on + strand at 1253.906 kb on + strand at 1253.906 kb on + strand at 1253.906 kb on + strand at 1253.907 kb on - strand at 1254.035 kb on + strand at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.177 kb on + strand, within MPMX19_01204 at 1254.178 kb on - strand, within MPMX19_01204 at 1254.178 kb on - strand, within MPMX19_01204 at 1254.178 kb on - strand, within MPMX19_01204 at 1254.178 kb on - strand, within MPMX19_01204 at 1254.178 kb on - strand, within MPMX19_01204 at 1254.178 kb on - strand, within MPMX19_01204 at 1254.178 kb on - strand, within MPMX19_01204 at 1254.336 kb on - strand, within MPMX19_01204 at 1254.378 kb on + strand, within MPMX19_01204 at 1254.378 kb on + strand, within MPMX19_01204 at 1254.378 kb on + strand, within MPMX19_01204 at 1254.378 kb on + strand, within MPMX19_01204 at 1254.379 kb on - strand, within MPMX19_01204 at 1254.379 kb on - strand, within MPMX19_01204 at 1254.379 kb on - strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.511 kb on + strand, within MPMX19_01204 at 1254.512 kb on - strand, within MPMX19_01204 at 1254.512 kb on - strand, within MPMX19_01204 at 1254.512 kb on - strand, within MPMX19_01204 at 1254.512 kb on - strand, within MPMX19_01204 at 1254.512 kb on - strand, within MPMX19_01204 at 1254.512 kb on - strand, within MPMX19_01204 at 1254.512 kb on - strand, within MPMX19_01204 at 1254.512 kb on - strand, within MPMX19_01204 at 1254.513 kb on + strand, within MPMX19_01204 at 1254.513 kb on + strand, within MPMX19_01204 at 1254.513 kb on + strand, within MPMX19_01204 at 1254.513 kb on + strand, within MPMX19_01204 at 1254.513 kb on + strand, within MPMX19_01204 at 1254.513 kb on + strand, within MPMX19_01204 at 1254.513 kb on + strand, within MPMX19_01204 at 1254.513 kb on + strand, within MPMX19_01204 at 1254.513 kb on + strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.514 kb on - strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.516 kb on + strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.517 kb on - strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.663 kb on + strand, within MPMX19_01204 at 1254.775 kb on + strand, within MPMX19_01204 at 1254.775 kb on + strand, within MPMX19_01204 at 1254.776 kb on - strand, within MPMX19_01204 at 1254.789 kb on + strand, within MPMX19_01204 at 1254.789 kb on + strand, within MPMX19_01204 at 1254.789 kb on + strand, within MPMX19_01204 at 1254.789 kb on + strand, within MPMX19_01204 at 1254.789 kb on + strand, within MPMX19_01204 at 1254.789 kb on + strand, within MPMX19_01204 at 1254.789 kb on + strand, within MPMX19_01204 at 1254.789 kb on + strand, within MPMX19_01204 at 1254.790 kb on - strand, within MPMX19_01204 at 1254.790 kb on - strand, within MPMX19_01204 at 1254.790 kb on - strand, within MPMX19_01204 at 1254.790 kb on - strand, within MPMX19_01204 at 1254.790 kb on - strand, within MPMX19_01204 at 1254.790 kb on - strand, within MPMX19_01204
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 1,252,182 + -0.4 1,252,209 + -0.6 1,252,209 + +0.1 1,252,333 + MPMX19_01202 0.16 -1.3 1,252,334 - MPMX19_01202 0.16 -0.9 1,252,432 + MPMX19_01202 0.28 -0.7 1,252,432 + MPMX19_01202 0.28 +1.7 1,252,432 + MPMX19_01202 0.28 -0.1 1,252,432 + MPMX19_01202 0.28 -1.5 1,252,433 - MPMX19_01202 0.28 +0.6 1,252,445 + MPMX19_01202 0.30 -0.1 1,252,445 + MPMX19_01202 0.30 -0.1 1,252,446 - MPMX19_01202 0.30 -1.1 1,252,446 - MPMX19_01202 0.30 -1.1 1,252,480 + MPMX19_01202 0.34 -1.9 1,252,624 + MPMX19_01202 0.51 -1.0 1,252,625 - MPMX19_01202 0.51 -1.5 1,252,625 - MPMX19_01202 0.51 -1.2 1,252,625 - MPMX19_01202 0.51 -1.1 1,252,625 - MPMX19_01202 0.51 -0.5 1,252,778 - MPMX19_01202 0.69 -0.7 1,253,035 + +0.3 1,253,035 + -1.0 1,253,036 - +0.1 1,253,036 - +0.6 1,253,304 + MPMX19_01203 0.24 +0.1 1,253,304 + MPMX19_01203 0.24 -1.3 1,253,304 + MPMX19_01203 0.24 +1.1 1,253,304 + MPMX19_01203 0.24 +0.8 1,253,305 - MPMX19_01203 0.24 -1.7 1,253,305 - MPMX19_01203 0.24 -0.3 1,253,305 - MPMX19_01203 0.24 -0.5 1,253,305 - MPMX19_01203 0.24 +0.2 1,253,305 - MPMX19_01203 0.24 -1.4 1,253,305 - MPMX19_01203 0.24 -0.3 1,253,305 - MPMX19_01203 0.24 +1.2 1,253,305 - MPMX19_01203 0.24 -0.1 1,253,305 - MPMX19_01203 0.24 +0.7 1,253,305 - MPMX19_01203 0.24 -0.4 1,253,560 + MPMX19_01203 0.62 -0.3 1,253,647 + MPMX19_01203 0.75 +1.7 1,253,647 + MPMX19_01203 0.75 +1.5 1,253,648 - MPMX19_01203 0.76 +0.8 1,253,803 + -0.3 1,253,803 + -0.3 1,253,804 - +0.5 1,253,828 - +0.3 1,253,875 + -0.7 1,253,876 - -0.8 1,253,876 - -2.0 1,253,876 - -1.6 1,253,904 + -0.8 1,253,906 + -1.1 1,253,906 + +0.1 1,253,906 + -0.3 1,253,907 - -0.4 1,254,035 + -0.6 1,254,177 + MPMX19_01204 0.13 -0.2 1,254,177 + MPMX19_01204 0.13 -1.1 1,254,177 + MPMX19_01204 0.13 +0.2 1,254,177 + MPMX19_01204 0.13 -1.1 1,254,177 + MPMX19_01204 0.13 -2.3 1,254,177 + MPMX19_01204 0.13 -0.2 1,254,177 + MPMX19_01204 0.13 -0.3 1,254,177 + MPMX19_01204 0.13 +0.4 1,254,177 + MPMX19_01204 0.13 -1.9 1,254,177 + MPMX19_01204 0.13 -1.5 1,254,177 + MPMX19_01204 0.13 -0.6 1,254,177 + MPMX19_01204 0.13 +1.0 1,254,177 + MPMX19_01204 0.13 -1.9 1,254,177 + MPMX19_01204 0.13 -0.4 1,254,178 - MPMX19_01204 0.13 -0.6 1,254,178 - MPMX19_01204 0.13 +0.3 1,254,178 - MPMX19_01204 0.13 -0.5 1,254,178 - MPMX19_01204 0.13 -0.6 1,254,178 - MPMX19_01204 0.13 +1.4 1,254,178 - MPMX19_01204 0.13 +0.1 1,254,178 - MPMX19_01204 0.13 -0.2 1,254,336 - MPMX19_01204 0.29 -1.3 1,254,378 + MPMX19_01204 0.33 -0.4 1,254,378 + MPMX19_01204 0.33 +0.7 1,254,378 + MPMX19_01204 0.33 -1.0 1,254,378 + MPMX19_01204 0.33 -1.6 1,254,379 - MPMX19_01204 0.33 -0.8 1,254,379 - MPMX19_01204 0.33 +0.1 1,254,379 - MPMX19_01204 0.33 -1.6 1,254,511 + MPMX19_01204 0.47 -0.5 1,254,511 + MPMX19_01204 0.47 -1.1 1,254,511 + MPMX19_01204 0.47 +3.0 1,254,511 + MPMX19_01204 0.47 -0.6 1,254,511 + MPMX19_01204 0.47 +0.9 1,254,511 + MPMX19_01204 0.47 +1.4 1,254,511 + MPMX19_01204 0.47 +0.7 1,254,511 + MPMX19_01204 0.47 +1.1 1,254,511 + MPMX19_01204 0.47 +0.2 1,254,511 + MPMX19_01204 0.47 +0.1 1,254,511 + MPMX19_01204 0.47 -1.5 1,254,512 - MPMX19_01204 0.47 -1.6 1,254,512 - MPMX19_01204 0.47 +0.1 1,254,512 - MPMX19_01204 0.47 -1.6 1,254,512 - MPMX19_01204 0.47 -1.1 1,254,512 - MPMX19_01204 0.47 +1.1 1,254,512 - MPMX19_01204 0.47 -1.6 1,254,512 - MPMX19_01204 0.47 -0.5 1,254,512 - MPMX19_01204 0.47 -0.1 1,254,513 + MPMX19_01204 0.47 +1.7 1,254,513 + MPMX19_01204 0.47 -0.3 1,254,513 + MPMX19_01204 0.47 +0.2 1,254,513 + MPMX19_01204 0.47 +0.5 1,254,513 + MPMX19_01204 0.47 -0.5 1,254,513 + MPMX19_01204 0.47 -0.8 1,254,513 + MPMX19_01204 0.47 -0.7 1,254,513 + MPMX19_01204 0.47 -0.0 1,254,513 + MPMX19_01204 0.47 -1.6 1,254,514 - MPMX19_01204 0.47 -0.4 1,254,514 - MPMX19_01204 0.47 +1.7 1,254,514 - MPMX19_01204 0.47 -0.3 1,254,514 - MPMX19_01204 0.47 +0.5 1,254,514 - MPMX19_01204 0.47 -0.6 1,254,514 - MPMX19_01204 0.47 -0.6 1,254,514 - MPMX19_01204 0.47 -0.5 1,254,514 - MPMX19_01204 0.47 -0.5 1,254,514 - MPMX19_01204 0.47 -1.9 1,254,514 - MPMX19_01204 0.47 +0.5 1,254,516 + MPMX19_01204 0.47 -0.5 1,254,516 + MPMX19_01204 0.47 +0.1 1,254,516 + MPMX19_01204 0.47 -1.2 1,254,516 + MPMX19_01204 0.47 -0.6 1,254,516 + MPMX19_01204 0.47 -1.3 1,254,516 + MPMX19_01204 0.47 +1.7 1,254,516 + MPMX19_01204 0.47 -0.6 1,254,516 + MPMX19_01204 0.47 +0.7 1,254,516 + MPMX19_01204 0.47 +0.6 1,254,516 + MPMX19_01204 0.47 +0.1 1,254,516 + MPMX19_01204 0.47 -1.3 1,254,516 + MPMX19_01204 0.47 -0.3 1,254,516 + MPMX19_01204 0.47 -1.9 1,254,516 + MPMX19_01204 0.47 +1.0 1,254,517 - MPMX19_01204 0.47 +0.6 1,254,517 - MPMX19_01204 0.47 -1.0 1,254,517 - MPMX19_01204 0.47 -1.9 1,254,517 - MPMX19_01204 0.47 -0.0 1,254,517 - MPMX19_01204 0.47 -1.6 1,254,517 - MPMX19_01204 0.47 -1.0 1,254,517 - MPMX19_01204 0.47 -0.6 1,254,517 - MPMX19_01204 0.47 -1.1 1,254,517 - MPMX19_01204 0.47 -0.0 1,254,517 - MPMX19_01204 0.47 -2.4 1,254,517 - MPMX19_01204 0.47 -0.5 1,254,517 - MPMX19_01204 0.47 +1.5 1,254,517 - MPMX19_01204 0.47 -0.4 1,254,517 - MPMX19_01204 0.47 +0.7 1,254,517 - MPMX19_01204 0.47 -0.0 1,254,517 - MPMX19_01204 0.47 -0.6 1,254,517 - MPMX19_01204 0.47 -1.5 1,254,517 - MPMX19_01204 0.47 -0.3 1,254,517 - MPMX19_01204 0.47 -0.9 1,254,517 - MPMX19_01204 0.47 -0.5 1,254,517 - MPMX19_01204 0.47 +0.4 1,254,517 - MPMX19_01204 0.47 -1.9 1,254,663 + MPMX19_01204 0.62 -1.3 1,254,663 + MPMX19_01204 0.62 -1.3 1,254,663 + MPMX19_01204 0.62 -0.3 1,254,663 + MPMX19_01204 0.62 -0.5 1,254,663 + MPMX19_01204 0.62 -1.9 1,254,663 + MPMX19_01204 0.62 -0.0 1,254,663 + MPMX19_01204 0.62 +0.1 1,254,663 + MPMX19_01204 0.62 -1.3 1,254,663 + MPMX19_01204 0.62 -0.6 1,254,663 + MPMX19_01204 0.62 +0.8 1,254,663 + MPMX19_01204 0.62 +0.5 1,254,663 + MPMX19_01204 0.62 +0.4 1,254,663 + MPMX19_01204 0.62 -1.2 1,254,775 + MPMX19_01204 0.73 -0.1 1,254,775 + MPMX19_01204 0.73 -2.5 1,254,776 - MPMX19_01204 0.73 -0.6 1,254,789 + MPMX19_01204 0.74 +0.3 1,254,789 + MPMX19_01204 0.74 +0.5 1,254,789 + MPMX19_01204 0.74 -0.0 1,254,789 + MPMX19_01204 0.74 +0.7 1,254,789 + MPMX19_01204 0.74 -0.6 1,254,789 + MPMX19_01204 0.74 -2.1 1,254,789 + MPMX19_01204 0.74 -0.5 1,254,789 + MPMX19_01204 0.74 -0.6 1,254,790 - MPMX19_01204 0.75 -1.3 1,254,790 - MPMX19_01204 0.75 -0.2 1,254,790 - MPMX19_01204 0.75 -0.3 1,254,790 - MPMX19_01204 0.75 -0.1 1,254,790 - MPMX19_01204 0.75 +0.1 1,254,790 - MPMX19_01204 0.75 +0.1
Or see this region's nucleotide sequence