Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01203

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01202 and MPMX19_01203 are separated by 109 nucleotidesMPMX19_01203 and MPMX19_01204 are separated by 237 nucleotides MPMX19_01202: MPMX19_01202 - Ribosomal RNA large subunit methyltransferase J, at 1,252,195 to 1,253,037 _01202 MPMX19_01203: MPMX19_01203 - hypothetical protein, at 1,253,147 to 1,253,809 _01203 MPMX19_01204: MPMX19_01204 - hypothetical protein, at 1,254,047 to 1,255,042 _01204 Position (kb) 1253 1254Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1252.182 kb on + strandat 1252.209 kb on + strandat 1252.209 kb on + strandat 1252.333 kb on + strand, within MPMX19_01202at 1252.334 kb on - strand, within MPMX19_01202at 1252.432 kb on + strand, within MPMX19_01202at 1252.432 kb on + strand, within MPMX19_01202at 1252.432 kb on + strand, within MPMX19_01202at 1252.432 kb on + strand, within MPMX19_01202at 1252.433 kb on - strand, within MPMX19_01202at 1252.445 kb on + strand, within MPMX19_01202at 1252.445 kb on + strand, within MPMX19_01202at 1252.446 kb on - strand, within MPMX19_01202at 1252.446 kb on - strand, within MPMX19_01202at 1252.480 kb on + strand, within MPMX19_01202at 1252.624 kb on + strand, within MPMX19_01202at 1252.625 kb on - strand, within MPMX19_01202at 1252.625 kb on - strand, within MPMX19_01202at 1252.625 kb on - strand, within MPMX19_01202at 1252.625 kb on - strand, within MPMX19_01202at 1252.778 kb on - strand, within MPMX19_01202at 1253.035 kb on + strandat 1253.035 kb on + strandat 1253.036 kb on - strandat 1253.036 kb on - strandat 1253.304 kb on + strand, within MPMX19_01203at 1253.304 kb on + strand, within MPMX19_01203at 1253.304 kb on + strand, within MPMX19_01203at 1253.304 kb on + strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.305 kb on - strand, within MPMX19_01203at 1253.560 kb on + strand, within MPMX19_01203at 1253.647 kb on + strand, within MPMX19_01203at 1253.647 kb on + strand, within MPMX19_01203at 1253.648 kb on - strand, within MPMX19_01203at 1253.803 kb on + strandat 1253.803 kb on + strandat 1253.804 kb on - strandat 1253.828 kb on - strandat 1253.875 kb on + strandat 1253.876 kb on - strandat 1253.876 kb on - strandat 1253.876 kb on - strandat 1253.904 kb on + strandat 1253.906 kb on + strandat 1253.906 kb on + strandat 1253.906 kb on + strandat 1253.907 kb on - strandat 1254.035 kb on + strandat 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.177 kb on + strand, within MPMX19_01204at 1254.178 kb on - strand, within MPMX19_01204at 1254.178 kb on - strand, within MPMX19_01204at 1254.178 kb on - strand, within MPMX19_01204at 1254.178 kb on - strand, within MPMX19_01204at 1254.178 kb on - strand, within MPMX19_01204at 1254.178 kb on - strand, within MPMX19_01204at 1254.178 kb on - strand, within MPMX19_01204at 1254.336 kb on - strand, within MPMX19_01204at 1254.378 kb on + strand, within MPMX19_01204at 1254.378 kb on + strand, within MPMX19_01204at 1254.378 kb on + strand, within MPMX19_01204at 1254.378 kb on + strand, within MPMX19_01204at 1254.379 kb on - strand, within MPMX19_01204at 1254.379 kb on - strand, within MPMX19_01204at 1254.379 kb on - strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.511 kb on + strand, within MPMX19_01204at 1254.512 kb on - strand, within MPMX19_01204at 1254.512 kb on - strand, within MPMX19_01204at 1254.512 kb on - strand, within MPMX19_01204at 1254.512 kb on - strand, within MPMX19_01204at 1254.512 kb on - strand, within MPMX19_01204at 1254.512 kb on - strand, within MPMX19_01204at 1254.512 kb on - strand, within MPMX19_01204at 1254.512 kb on - strand, within MPMX19_01204at 1254.513 kb on + strand, within MPMX19_01204at 1254.513 kb on + strand, within MPMX19_01204at 1254.513 kb on + strand, within MPMX19_01204at 1254.513 kb on + strand, within MPMX19_01204at 1254.513 kb on + strand, within MPMX19_01204at 1254.513 kb on + strand, within MPMX19_01204at 1254.513 kb on + strand, within MPMX19_01204at 1254.513 kb on + strand, within MPMX19_01204at 1254.513 kb on + strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.514 kb on - strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.516 kb on + strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.517 kb on - strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.663 kb on + strand, within MPMX19_01204at 1254.775 kb on + strand, within MPMX19_01204at 1254.775 kb on + strand, within MPMX19_01204at 1254.776 kb on - strand, within MPMX19_01204at 1254.789 kb on + strand, within MPMX19_01204at 1254.789 kb on + strand, within MPMX19_01204at 1254.789 kb on + strand, within MPMX19_01204at 1254.789 kb on + strand, within MPMX19_01204at 1254.789 kb on + strand, within MPMX19_01204at 1254.789 kb on + strand, within MPMX19_01204at 1254.789 kb on + strand, within MPMX19_01204at 1254.789 kb on + strand, within MPMX19_01204at 1254.790 kb on - strand, within MPMX19_01204at 1254.790 kb on - strand, within MPMX19_01204at 1254.790 kb on - strand, within MPMX19_01204at 1254.790 kb on - strand, within MPMX19_01204at 1254.790 kb on - strand, within MPMX19_01204at 1254.790 kb on - strand, within MPMX19_01204

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,252,182 + -0.4
1,252,209 + -0.6
1,252,209 + +0.1
1,252,333 + MPMX19_01202 0.16 -1.3
1,252,334 - MPMX19_01202 0.16 -0.9
1,252,432 + MPMX19_01202 0.28 -0.7
1,252,432 + MPMX19_01202 0.28 +1.7
1,252,432 + MPMX19_01202 0.28 -0.1
1,252,432 + MPMX19_01202 0.28 -1.5
1,252,433 - MPMX19_01202 0.28 +0.6
1,252,445 + MPMX19_01202 0.30 -0.1
1,252,445 + MPMX19_01202 0.30 -0.1
1,252,446 - MPMX19_01202 0.30 -1.1
1,252,446 - MPMX19_01202 0.30 -1.1
1,252,480 + MPMX19_01202 0.34 -1.9
1,252,624 + MPMX19_01202 0.51 -1.0
1,252,625 - MPMX19_01202 0.51 -1.5
1,252,625 - MPMX19_01202 0.51 -1.2
1,252,625 - MPMX19_01202 0.51 -1.1
1,252,625 - MPMX19_01202 0.51 -0.5
1,252,778 - MPMX19_01202 0.69 -0.7
1,253,035 + +0.3
1,253,035 + -1.0
1,253,036 - +0.1
1,253,036 - +0.6
1,253,304 + MPMX19_01203 0.24 +0.1
1,253,304 + MPMX19_01203 0.24 -1.3
1,253,304 + MPMX19_01203 0.24 +1.1
1,253,304 + MPMX19_01203 0.24 +0.8
1,253,305 - MPMX19_01203 0.24 -1.7
1,253,305 - MPMX19_01203 0.24 -0.3
1,253,305 - MPMX19_01203 0.24 -0.5
1,253,305 - MPMX19_01203 0.24 +0.2
1,253,305 - MPMX19_01203 0.24 -1.4
1,253,305 - MPMX19_01203 0.24 -0.3
1,253,305 - MPMX19_01203 0.24 +1.2
1,253,305 - MPMX19_01203 0.24 -0.1
1,253,305 - MPMX19_01203 0.24 +0.7
1,253,305 - MPMX19_01203 0.24 -0.4
1,253,560 + MPMX19_01203 0.62 -0.3
1,253,647 + MPMX19_01203 0.75 +1.7
1,253,647 + MPMX19_01203 0.75 +1.5
1,253,648 - MPMX19_01203 0.76 +0.8
1,253,803 + -0.3
1,253,803 + -0.3
1,253,804 - +0.5
1,253,828 - +0.3
1,253,875 + -0.7
1,253,876 - -0.8
1,253,876 - -2.0
1,253,876 - -1.6
1,253,904 + -0.8
1,253,906 + -1.1
1,253,906 + +0.1
1,253,906 + -0.3
1,253,907 - -0.4
1,254,035 + -0.6
1,254,177 + MPMX19_01204 0.13 -0.2
1,254,177 + MPMX19_01204 0.13 -1.1
1,254,177 + MPMX19_01204 0.13 +0.2
1,254,177 + MPMX19_01204 0.13 -1.1
1,254,177 + MPMX19_01204 0.13 -2.3
1,254,177 + MPMX19_01204 0.13 -0.2
1,254,177 + MPMX19_01204 0.13 -0.3
1,254,177 + MPMX19_01204 0.13 +0.4
1,254,177 + MPMX19_01204 0.13 -1.9
1,254,177 + MPMX19_01204 0.13 -1.5
1,254,177 + MPMX19_01204 0.13 -0.6
1,254,177 + MPMX19_01204 0.13 +1.0
1,254,177 + MPMX19_01204 0.13 -1.9
1,254,177 + MPMX19_01204 0.13 -0.4
1,254,178 - MPMX19_01204 0.13 -0.6
1,254,178 - MPMX19_01204 0.13 +0.3
1,254,178 - MPMX19_01204 0.13 -0.5
1,254,178 - MPMX19_01204 0.13 -0.6
1,254,178 - MPMX19_01204 0.13 +1.4
1,254,178 - MPMX19_01204 0.13 +0.1
1,254,178 - MPMX19_01204 0.13 -0.2
1,254,336 - MPMX19_01204 0.29 -1.3
1,254,378 + MPMX19_01204 0.33 -0.4
1,254,378 + MPMX19_01204 0.33 +0.7
1,254,378 + MPMX19_01204 0.33 -1.0
1,254,378 + MPMX19_01204 0.33 -1.6
1,254,379 - MPMX19_01204 0.33 -0.8
1,254,379 - MPMX19_01204 0.33 +0.1
1,254,379 - MPMX19_01204 0.33 -1.6
1,254,511 + MPMX19_01204 0.47 -0.5
1,254,511 + MPMX19_01204 0.47 -1.1
1,254,511 + MPMX19_01204 0.47 +3.0
1,254,511 + MPMX19_01204 0.47 -0.6
1,254,511 + MPMX19_01204 0.47 +0.9
1,254,511 + MPMX19_01204 0.47 +1.4
1,254,511 + MPMX19_01204 0.47 +0.7
1,254,511 + MPMX19_01204 0.47 +1.1
1,254,511 + MPMX19_01204 0.47 +0.2
1,254,511 + MPMX19_01204 0.47 +0.1
1,254,511 + MPMX19_01204 0.47 -1.5
1,254,512 - MPMX19_01204 0.47 -1.6
1,254,512 - MPMX19_01204 0.47 +0.1
1,254,512 - MPMX19_01204 0.47 -1.6
1,254,512 - MPMX19_01204 0.47 -1.1
1,254,512 - MPMX19_01204 0.47 +1.1
1,254,512 - MPMX19_01204 0.47 -1.6
1,254,512 - MPMX19_01204 0.47 -0.5
1,254,512 - MPMX19_01204 0.47 -0.1
1,254,513 + MPMX19_01204 0.47 +1.7
1,254,513 + MPMX19_01204 0.47 -0.3
1,254,513 + MPMX19_01204 0.47 +0.2
1,254,513 + MPMX19_01204 0.47 +0.5
1,254,513 + MPMX19_01204 0.47 -0.5
1,254,513 + MPMX19_01204 0.47 -0.8
1,254,513 + MPMX19_01204 0.47 -0.7
1,254,513 + MPMX19_01204 0.47 -0.0
1,254,513 + MPMX19_01204 0.47 -1.6
1,254,514 - MPMX19_01204 0.47 -0.4
1,254,514 - MPMX19_01204 0.47 +1.7
1,254,514 - MPMX19_01204 0.47 -0.3
1,254,514 - MPMX19_01204 0.47 +0.5
1,254,514 - MPMX19_01204 0.47 -0.6
1,254,514 - MPMX19_01204 0.47 -0.6
1,254,514 - MPMX19_01204 0.47 -0.5
1,254,514 - MPMX19_01204 0.47 -0.5
1,254,514 - MPMX19_01204 0.47 -1.9
1,254,514 - MPMX19_01204 0.47 +0.5
1,254,516 + MPMX19_01204 0.47 -0.5
1,254,516 + MPMX19_01204 0.47 +0.1
1,254,516 + MPMX19_01204 0.47 -1.2
1,254,516 + MPMX19_01204 0.47 -0.6
1,254,516 + MPMX19_01204 0.47 -1.3
1,254,516 + MPMX19_01204 0.47 +1.7
1,254,516 + MPMX19_01204 0.47 -0.6
1,254,516 + MPMX19_01204 0.47 +0.7
1,254,516 + MPMX19_01204 0.47 +0.6
1,254,516 + MPMX19_01204 0.47 +0.1
1,254,516 + MPMX19_01204 0.47 -1.3
1,254,516 + MPMX19_01204 0.47 -0.3
1,254,516 + MPMX19_01204 0.47 -1.9
1,254,516 + MPMX19_01204 0.47 +1.0
1,254,517 - MPMX19_01204 0.47 +0.6
1,254,517 - MPMX19_01204 0.47 -1.0
1,254,517 - MPMX19_01204 0.47 -1.9
1,254,517 - MPMX19_01204 0.47 -0.0
1,254,517 - MPMX19_01204 0.47 -1.6
1,254,517 - MPMX19_01204 0.47 -1.0
1,254,517 - MPMX19_01204 0.47 -0.6
1,254,517 - MPMX19_01204 0.47 -1.1
1,254,517 - MPMX19_01204 0.47 -0.0
1,254,517 - MPMX19_01204 0.47 -2.4
1,254,517 - MPMX19_01204 0.47 -0.5
1,254,517 - MPMX19_01204 0.47 +1.5
1,254,517 - MPMX19_01204 0.47 -0.4
1,254,517 - MPMX19_01204 0.47 +0.7
1,254,517 - MPMX19_01204 0.47 -0.0
1,254,517 - MPMX19_01204 0.47 -0.6
1,254,517 - MPMX19_01204 0.47 -1.5
1,254,517 - MPMX19_01204 0.47 -0.3
1,254,517 - MPMX19_01204 0.47 -0.9
1,254,517 - MPMX19_01204 0.47 -0.5
1,254,517 - MPMX19_01204 0.47 +0.4
1,254,517 - MPMX19_01204 0.47 -1.9
1,254,663 + MPMX19_01204 0.62 -1.3
1,254,663 + MPMX19_01204 0.62 -1.3
1,254,663 + MPMX19_01204 0.62 -0.3
1,254,663 + MPMX19_01204 0.62 -0.5
1,254,663 + MPMX19_01204 0.62 -1.9
1,254,663 + MPMX19_01204 0.62 -0.0
1,254,663 + MPMX19_01204 0.62 +0.1
1,254,663 + MPMX19_01204 0.62 -1.3
1,254,663 + MPMX19_01204 0.62 -0.6
1,254,663 + MPMX19_01204 0.62 +0.8
1,254,663 + MPMX19_01204 0.62 +0.5
1,254,663 + MPMX19_01204 0.62 +0.4
1,254,663 + MPMX19_01204 0.62 -1.2
1,254,775 + MPMX19_01204 0.73 -0.1
1,254,775 + MPMX19_01204 0.73 -2.5
1,254,776 - MPMX19_01204 0.73 -0.6
1,254,789 + MPMX19_01204 0.74 +0.3
1,254,789 + MPMX19_01204 0.74 +0.5
1,254,789 + MPMX19_01204 0.74 -0.0
1,254,789 + MPMX19_01204 0.74 +0.7
1,254,789 + MPMX19_01204 0.74 -0.6
1,254,789 + MPMX19_01204 0.74 -2.1
1,254,789 + MPMX19_01204 0.74 -0.5
1,254,789 + MPMX19_01204 0.74 -0.6
1,254,790 - MPMX19_01204 0.75 -1.3
1,254,790 - MPMX19_01204 0.75 -0.2
1,254,790 - MPMX19_01204 0.75 -0.3
1,254,790 - MPMX19_01204 0.75 -0.1
1,254,790 - MPMX19_01204 0.75 +0.1
1,254,790 - MPMX19_01204 0.75 +0.1

Or see this region's nucleotide sequence