Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01165

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01164 and MPMX19_01165 are separated by 125 nucleotidesMPMX19_01165 and MPMX19_01166 are separated by 225 nucleotides MPMX19_01164: MPMX19_01164 - Protein translocase subunit SecD, at 1,202,295 to 1,203,893 _01164 MPMX19_01165: MPMX19_01165 - hypothetical protein, at 1,204,019 to 1,204,444 _01165 MPMX19_01166: MPMX19_01166 - hypothetical protein, at 1,204,670 to 1,205,563 _01166 Position (kb) 1204 1205Strain fitness (log2 ratio) -2 -1 0 1 2at 1204.021 kb on - strandat 1204.021 kb on - strandat 1204.458 kb on - strandat 1204.458 kb on - strandat 1204.458 kb on - strandat 1204.458 kb on - strandat 1204.458 kb on - strandat 1204.508 kb on - strandat 1204.508 kb on - strandat 1204.508 kb on - strandat 1204.508 kb on - strandat 1204.508 kb on - strandat 1204.510 kb on - strandat 1204.510 kb on - strandat 1204.590 kb on + strandat 1204.590 kb on + strandat 1204.591 kb on - strandat 1204.591 kb on - strandat 1204.669 kb on + strandat 1204.670 kb on - strandat 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.174 kb on + strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.175 kb on - strand, within MPMX19_01166at 1205.237 kb on + strand, within MPMX19_01166at 1205.237 kb on + strand, within MPMX19_01166at 1205.237 kb on + strand, within MPMX19_01166at 1205.237 kb on + strand, within MPMX19_01166at 1205.237 kb on + strand, within MPMX19_01166at 1205.237 kb on + strand, within MPMX19_01166at 1205.237 kb on + strand, within MPMX19_01166at 1205.238 kb on - strand, within MPMX19_01166at 1205.238 kb on - strand, within MPMX19_01166at 1205.238 kb on - strand, within MPMX19_01166at 1205.238 kb on - strand, within MPMX19_01166at 1205.238 kb on - strand, within MPMX19_01166at 1205.238 kb on - strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.393 kb on + strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.394 kb on - strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.414 kb on + strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166at 1205.415 kb on - strand, within MPMX19_01166

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,204,021 - -1.9
1,204,021 - -1.5
1,204,458 - +0.8
1,204,458 - -0.5
1,204,458 - +1.1
1,204,458 - -0.9
1,204,458 - -0.9
1,204,508 - -0.6
1,204,508 - -0.3
1,204,508 - -0.4
1,204,508 - -0.1
1,204,508 - -0.4
1,204,510 - -1.5
1,204,510 - +0.1
1,204,590 + -0.5
1,204,590 + -0.7
1,204,591 - +0.0
1,204,591 - +0.6
1,204,669 + -0.8
1,204,670 - -0.2
1,205,174 + MPMX19_01166 0.56 -0.3
1,205,174 + MPMX19_01166 0.56 -1.8
1,205,174 + MPMX19_01166 0.56 +0.1
1,205,174 + MPMX19_01166 0.56 -0.8
1,205,174 + MPMX19_01166 0.56 +0.4
1,205,174 + MPMX19_01166 0.56 -0.8
1,205,174 + MPMX19_01166 0.56 +1.4
1,205,174 + MPMX19_01166 0.56 -1.8
1,205,174 + MPMX19_01166 0.56 -0.6
1,205,174 + MPMX19_01166 0.56 +0.1
1,205,174 + MPMX19_01166 0.56 +0.6
1,205,174 + MPMX19_01166 0.56 +0.2
1,205,174 + MPMX19_01166 0.56 +2.5
1,205,174 + MPMX19_01166 0.56 +0.4
1,205,174 + MPMX19_01166 0.56 -0.4
1,205,174 + MPMX19_01166 0.56 -0.9
1,205,174 + MPMX19_01166 0.56 -0.9
1,205,175 - MPMX19_01166 0.56 -0.9
1,205,175 - MPMX19_01166 0.56 -0.3
1,205,175 - MPMX19_01166 0.56 -0.0
1,205,175 - MPMX19_01166 0.56 +0.0
1,205,175 - MPMX19_01166 0.56 +1.4
1,205,175 - MPMX19_01166 0.56 -0.5
1,205,175 - MPMX19_01166 0.56 -0.9
1,205,175 - MPMX19_01166 0.56 -0.2
1,205,175 - MPMX19_01166 0.56 +0.8
1,205,175 - MPMX19_01166 0.56 -0.3
1,205,175 - MPMX19_01166 0.56 +0.1
1,205,175 - MPMX19_01166 0.56 -0.3
1,205,175 - MPMX19_01166 0.56 -0.5
1,205,175 - MPMX19_01166 0.56 +0.1
1,205,175 - MPMX19_01166 0.56 -1.1
1,205,175 - MPMX19_01166 0.56 -0.8
1,205,237 + MPMX19_01166 0.63 -0.5
1,205,237 + MPMX19_01166 0.63 +1.0
1,205,237 + MPMX19_01166 0.63 -0.4
1,205,237 + MPMX19_01166 0.63 +0.5
1,205,237 + MPMX19_01166 0.63 -0.2
1,205,237 + MPMX19_01166 0.63 -1.9
1,205,237 + MPMX19_01166 0.63 +0.7
1,205,238 - MPMX19_01166 0.64 -0.5
1,205,238 - MPMX19_01166 0.64 -0.4
1,205,238 - MPMX19_01166 0.64 -0.0
1,205,238 - MPMX19_01166 0.64 +2.0
1,205,238 - MPMX19_01166 0.64 +0.2
1,205,238 - MPMX19_01166 0.64 +1.4
1,205,393 + MPMX19_01166 0.81 -0.9
1,205,393 + MPMX19_01166 0.81 -0.2
1,205,393 + MPMX19_01166 0.81 -0.6
1,205,393 + MPMX19_01166 0.81 +0.5
1,205,393 + MPMX19_01166 0.81 +0.1
1,205,393 + MPMX19_01166 0.81 +0.2
1,205,393 + MPMX19_01166 0.81 +0.1
1,205,393 + MPMX19_01166 0.81 -0.9
1,205,393 + MPMX19_01166 0.81 -1.5
1,205,393 + MPMX19_01166 0.81 +0.6
1,205,393 + MPMX19_01166 0.81 -0.0
1,205,393 + MPMX19_01166 0.81 -1.3
1,205,393 + MPMX19_01166 0.81 -1.3
1,205,393 + MPMX19_01166 0.81 +0.2
1,205,393 + MPMX19_01166 0.81 -1.3
1,205,393 + MPMX19_01166 0.81 -2.0
1,205,393 + MPMX19_01166 0.81 -0.0
1,205,393 + MPMX19_01166 0.81 -1.0
1,205,394 - MPMX19_01166 0.81 -0.8
1,205,394 - MPMX19_01166 0.81 +0.7
1,205,394 - MPMX19_01166 0.81 +0.1
1,205,394 - MPMX19_01166 0.81 -1.6
1,205,394 - MPMX19_01166 0.81 +0.0
1,205,394 - MPMX19_01166 0.81 -0.8
1,205,394 - MPMX19_01166 0.81 -2.1
1,205,394 - MPMX19_01166 0.81 +0.4
1,205,394 - MPMX19_01166 0.81 -0.7
1,205,394 - MPMX19_01166 0.81 -1.5
1,205,394 - MPMX19_01166 0.81 -0.6
1,205,394 - MPMX19_01166 0.81 -0.4
1,205,394 - MPMX19_01166 0.81 -2.6
1,205,394 - MPMX19_01166 0.81 -1.7
1,205,394 - MPMX19_01166 0.81 +0.8
1,205,394 - MPMX19_01166 0.81 -1.1
1,205,394 - MPMX19_01166 0.81 -0.9
1,205,394 - MPMX19_01166 0.81 -0.1
1,205,414 + MPMX19_01166 0.83 -1.0
1,205,414 + MPMX19_01166 0.83 +0.4
1,205,414 + MPMX19_01166 0.83 +0.2
1,205,414 + MPMX19_01166 0.83 +1.2
1,205,414 + MPMX19_01166 0.83 +0.1
1,205,414 + MPMX19_01166 0.83 -0.5
1,205,414 + MPMX19_01166 0.83 -1.9
1,205,414 + MPMX19_01166 0.83 -0.9
1,205,414 + MPMX19_01166 0.83 +0.4
1,205,414 + MPMX19_01166 0.83 +0.3
1,205,414 + MPMX19_01166 0.83 -1.7
1,205,414 + MPMX19_01166 0.83 -1.5
1,205,414 + MPMX19_01166 0.83 +0.0
1,205,414 + MPMX19_01166 0.83 +0.3
1,205,415 - MPMX19_01166 0.83 -0.8
1,205,415 - MPMX19_01166 0.83 -0.8
1,205,415 - MPMX19_01166 0.83 +1.4
1,205,415 - MPMX19_01166 0.83 -0.2
1,205,415 - MPMX19_01166 0.83 -0.5
1,205,415 - MPMX19_01166 0.83 -0.5
1,205,415 - MPMX19_01166 0.83 +0.7
1,205,415 - MPMX19_01166 0.83 +1.4
1,205,415 - MPMX19_01166 0.83 +1.7
1,205,415 - MPMX19_01166 0.83 -1.6
1,205,415 - MPMX19_01166 0.83 -0.7
1,205,415 - MPMX19_01166 0.83 -0.6
1,205,415 - MPMX19_01166 0.83 -0.9
1,205,415 - MPMX19_01166 0.83 -0.8
1,205,415 - MPMX19_01166 0.83 -0.3
1,205,415 - MPMX19_01166 0.83 -0.3
1,205,415 - MPMX19_01166 0.83 -0.2
1,205,415 - MPMX19_01166 0.83 +0.4
1,205,415 - MPMX19_01166 0.83 -1.9
1,205,415 - MPMX19_01166 0.83 -0.8

Or see this region's nucleotide sequence