Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01162 and MPMX19_01163 are separated by 30 nucleotides MPMX19_01163 and MPMX19_01164 are separated by 11 nucleotides MPMX19_01164 and MPMX19_01165 are separated by 125 nucleotides MPMX19_01165 and MPMX19_01166 are separated by 225 nucleotides
MPMX19_01162: MPMX19_01162 - hypothetical protein, at 1,200,919 to 1,201,296
_01162
MPMX19_01163: MPMX19_01163 - Protein translocase subunit SecF, at 1,201,327 to 1,202,283
_01163
MPMX19_01164: MPMX19_01164 - Protein translocase subunit SecD, at 1,202,295 to 1,203,893
_01164
MPMX19_01165: MPMX19_01165 - hypothetical protein, at 1,204,019 to 1,204,444
_01165
MPMX19_01166: MPMX19_01166 - hypothetical protein, at 1,204,670 to 1,205,563
_01166
Position (kb)
1202
1203
1204 Strain fitness (log2 ratio)
-2
-1
0
1 at 1201.297 kb on - strand at 1201.297 kb on - strand at 1201.297 kb on - strand at 1201.297 kb on - strand at 1201.297 kb on - strand at 1201.297 kb on - strand at 1204.021 kb on - strand at 1204.021 kb on - strand at 1204.458 kb on - strand at 1204.458 kb on - strand at 1204.458 kb on - strand at 1204.458 kb on - strand at 1204.458 kb on - strand at 1204.508 kb on - strand at 1204.508 kb on - strand at 1204.508 kb on - strand at 1204.508 kb on - strand at 1204.508 kb on - strand at 1204.510 kb on - strand at 1204.510 kb on - strand at 1204.590 kb on + strand at 1204.590 kb on + strand at 1204.591 kb on - strand at 1204.591 kb on - strand at 1204.669 kb on + strand at 1204.670 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 1,201,297 - -2.1 1,201,297 - -1.5 1,201,297 - -0.6 1,201,297 - -1.1 1,201,297 - -1.6 1,201,297 - -0.9 1,204,021 - -1.9 1,204,021 - -1.5 1,204,458 - +0.8 1,204,458 - -0.5 1,204,458 - +1.1 1,204,458 - -0.9 1,204,458 - -0.9 1,204,508 - -0.6 1,204,508 - -0.3 1,204,508 - -0.4 1,204,508 - -0.1 1,204,508 - -0.4 1,204,510 - -1.5 1,204,510 - +0.1 1,204,590 + -0.5 1,204,590 + -0.7 1,204,591 - +0.0 1,204,591 - +0.6 1,204,669 + -0.8 1,204,670 - -0.2
Or see this region's nucleotide sequence