Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01164

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01162 and MPMX19_01163 are separated by 30 nucleotidesMPMX19_01163 and MPMX19_01164 are separated by 11 nucleotidesMPMX19_01164 and MPMX19_01165 are separated by 125 nucleotidesMPMX19_01165 and MPMX19_01166 are separated by 225 nucleotides MPMX19_01162: MPMX19_01162 - hypothetical protein, at 1,200,919 to 1,201,296 _01162 MPMX19_01163: MPMX19_01163 - Protein translocase subunit SecF, at 1,201,327 to 1,202,283 _01163 MPMX19_01164: MPMX19_01164 - Protein translocase subunit SecD, at 1,202,295 to 1,203,893 _01164 MPMX19_01165: MPMX19_01165 - hypothetical protein, at 1,204,019 to 1,204,444 _01165 MPMX19_01166: MPMX19_01166 - hypothetical protein, at 1,204,670 to 1,205,563 _01166 Position (kb) 1202 1203 1204Strain fitness (log2 ratio) -2 -1 0 1at 1201.297 kb on - strandat 1201.297 kb on - strandat 1201.297 kb on - strandat 1201.297 kb on - strandat 1201.297 kb on - strandat 1201.297 kb on - strandat 1204.021 kb on - strandat 1204.021 kb on - strandat 1204.458 kb on - strandat 1204.458 kb on - strandat 1204.458 kb on - strandat 1204.458 kb on - strandat 1204.458 kb on - strandat 1204.508 kb on - strandat 1204.508 kb on - strandat 1204.508 kb on - strandat 1204.508 kb on - strandat 1204.508 kb on - strandat 1204.510 kb on - strandat 1204.510 kb on - strandat 1204.590 kb on + strandat 1204.590 kb on + strandat 1204.591 kb on - strandat 1204.591 kb on - strandat 1204.669 kb on + strandat 1204.670 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,201,297 - -2.1
1,201,297 - -1.5
1,201,297 - -0.6
1,201,297 - -1.1
1,201,297 - -1.6
1,201,297 - -0.9
1,204,021 - -1.9
1,204,021 - -1.5
1,204,458 - +0.8
1,204,458 - -0.5
1,204,458 - +1.1
1,204,458 - -0.9
1,204,458 - -0.9
1,204,508 - -0.6
1,204,508 - -0.3
1,204,508 - -0.4
1,204,508 - -0.1
1,204,508 - -0.4
1,204,510 - -1.5
1,204,510 - +0.1
1,204,590 + -0.5
1,204,590 + -0.7
1,204,591 - +0.0
1,204,591 - +0.6
1,204,669 + -0.8
1,204,670 - -0.2

Or see this region's nucleotide sequence