Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01065 and MPMX19_01066 are separated by 86 nucleotides MPMX19_01066 and MPMX19_01067 are separated by 219 nucleotides MPMX19_01067 and MPMX19_01068 are separated by 38 nucleotides MPMX19_01068 and MPMX19_01069 are separated by 97 nucleotides
MPMX19_01065: MPMX19_01065 - hypothetical protein, at 1,104,539 to 1,104,919
_01065
MPMX19_01066: MPMX19_01066 - hypothetical protein, at 1,105,006 to 1,105,173
_01066
MPMX19_01067: MPMX19_01067 - hypothetical protein, at 1,105,393 to 1,105,773
_01067
MPMX19_01068: MPMX19_01068 - hypothetical protein, at 1,105,812 to 1,106,627
_01068
MPMX19_01069: MPMX19_01069 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 1,106,725 to 1,107,495
_01069
Position (kb) 1105
1106
1107 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1104.917 kb on + strand at 1104.960 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.983 kb on + strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1104.984 kb on - strand at 1105.092 kb on - strand, within MPMX19_01066 at 1105.161 kb on + strand at 1105.161 kb on + strand at 1105.161 kb on + strand at 1105.161 kb on + strand at 1105.161 kb on + strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.162 kb on - strand at 1105.247 kb on + strand at 1105.247 kb on + strand at 1105.247 kb on + strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.248 kb on - strand at 1105.338 kb on + strand at 1105.338 kb on + strand at 1105.572 kb on + strand, within MPMX19_01067 at 1105.573 kb on - strand, within MPMX19_01067 at 1106.462 kb on - strand, within MPMX19_01068 at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.563 kb on + strand at 1106.564 kb on - strand at 1106.564 kb on - strand at 1106.605 kb on + strand at 1106.605 kb on + strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.606 kb on - strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.712 kb on + strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.713 kb on - strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.716 kb on + strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1106.717 kb on - strand at 1107.057 kb on + strand, within MPMX19_01069 at 1107.057 kb on + strand, within MPMX19_01069 at 1107.057 kb on + strand, within MPMX19_01069 at 1107.057 kb on + strand, within MPMX19_01069 at 1107.057 kb on + strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.058 kb on - strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.190 kb on + strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.191 kb on - strand, within MPMX19_01069 at 1107.504 kb on + strand at 1107.504 kb on + strand at 1107.504 kb on + strand at 1107.505 kb on - strand at 1107.505 kb on - strand at 1107.505 kb on - strand at 1107.513 kb on + strand at 1107.513 kb on + strand at 1107.513 kb on + strand at 1107.513 kb on + strand at 1107.513 kb on + strand at 1107.514 kb on - strand at 1107.514 kb on - strand at 1107.514 kb on - strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.559 kb on + strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.560 kb on - strand at 1107.593 kb on + strand at 1107.593 kb on + strand at 1107.593 kb on + strand at 1107.593 kb on + strand at 1107.593 kb on + strand at 1107.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 1,104,917 + -0.6 1,104,960 + -1.3 1,104,983 + -1.1 1,104,983 + +2.3 1,104,983 + +1.0 1,104,983 + -1.5 1,104,983 + -0.9 1,104,983 + +0.1 1,104,983 + -0.3 1,104,983 + -1.3 1,104,983 + -0.3 1,104,983 + -1.3 1,104,983 + -1.2 1,104,983 + -1.2 1,104,983 + -0.2 1,104,983 + +1.0 1,104,983 + -0.6 1,104,984 - -0.1 1,104,984 - +0.6 1,104,984 - -0.6 1,104,984 - +0.7 1,104,984 - +0.2 1,104,984 - -1.5 1,104,984 - -0.2 1,104,984 - -0.8 1,104,984 - +0.4 1,104,984 - +0.7 1,104,984 - +0.3 1,104,984 - -2.2 1,104,984 - -0.3 1,104,984 - -0.2 1,104,984 - +1.0 1,105,092 - MPMX19_01066 0.51 -1.5 1,105,161 + -0.1 1,105,161 + -0.3 1,105,161 + +0.2 1,105,161 + -1.1 1,105,161 + -1.3 1,105,162 - -0.3 1,105,162 - -0.3 1,105,162 - -0.4 1,105,162 - +0.7 1,105,162 - +0.0 1,105,162 - -0.9 1,105,162 - -0.1 1,105,162 - -0.5 1,105,162 - +0.7 1,105,162 - -0.6 1,105,247 + +0.9 1,105,247 + -1.6 1,105,247 + -2.1 1,105,248 - +0.3 1,105,248 - -1.0 1,105,248 - -0.9 1,105,248 - -1.7 1,105,248 - -1.7 1,105,248 - -2.0 1,105,338 + +1.0 1,105,338 + -1.9 1,105,572 + MPMX19_01067 0.47 -1.6 1,105,573 - MPMX19_01067 0.47 +0.9 1,106,462 - MPMX19_01068 0.80 -0.8 1,106,563 + -0.3 1,106,563 + +0.8 1,106,563 + -1.1 1,106,563 + -2.4 1,106,563 + +0.2 1,106,563 + +0.8 1,106,564 - -0.9 1,106,564 - +2.0 1,106,605 + +1.1 1,106,605 + +3.0 1,106,606 - -2.0 1,106,606 - +1.0 1,106,606 - +0.5 1,106,606 - -0.8 1,106,606 - -0.4 1,106,606 - +1.1 1,106,712 + -0.5 1,106,712 + -0.4 1,106,712 + -0.6 1,106,712 + +0.1 1,106,712 + +0.6 1,106,712 + +0.3 1,106,712 + -0.6 1,106,712 + +0.7 1,106,712 + -0.6 1,106,712 + -2.3 1,106,712 + +0.9 1,106,712 + +0.6 1,106,712 + +1.0 1,106,712 + +0.0 1,106,712 + -0.8 1,106,712 + -1.5 1,106,712 + +1.7 1,106,712 + -1.0 1,106,712 + -0.5 1,106,712 + +0.7 1,106,712 + -0.1 1,106,712 + +0.7 1,106,712 + -0.8 1,106,712 + +0.4 1,106,712 + +1.1 1,106,712 + -0.8 1,106,712 + -0.3 1,106,712 + -0.1 1,106,712 + -1.1 1,106,712 + -0.1 1,106,713 - +1.5 1,106,713 - +1.3 1,106,713 - -0.0 1,106,713 - -0.6 1,106,713 - +1.4 1,106,713 - +0.9 1,106,713 - +1.7 1,106,713 - +0.2 1,106,713 - +0.7 1,106,713 - -0.5 1,106,713 - +1.4 1,106,713 - -1.6 1,106,713 - -0.7 1,106,713 - +0.7 1,106,713 - -0.6 1,106,713 - -1.3 1,106,713 - -0.4 1,106,713 - -0.7 1,106,713 - +0.8 1,106,713 - -2.6 1,106,713 - -0.6 1,106,713 - -1.6 1,106,713 - -0.8 1,106,713 - -2.2 1,106,713 - -2.0 1,106,716 + -0.4 1,106,716 + +0.3 1,106,716 + +0.1 1,106,716 + +0.0 1,106,716 + +0.2 1,106,716 + -0.9 1,106,716 + -0.0 1,106,716 + +1.2 1,106,716 + -1.7 1,106,716 + -0.6 1,106,716 + +0.7 1,106,716 + -1.4 1,106,716 + -0.6 1,106,716 + -2.1 1,106,716 + +0.9 1,106,716 + -0.0 1,106,716 + -0.9 1,106,716 + -0.5 1,106,716 + -0.5 1,106,716 + -1.6 1,106,716 + +0.7 1,106,716 + -0.6 1,106,716 + +0.3 1,106,716 + +0.6 1,106,716 + +0.1 1,106,716 + +0.3 1,106,716 + +0.1 1,106,717 - -0.3 1,106,717 - +0.1 1,106,717 - -2.3 1,106,717 - -0.8 1,106,717 - -1.6 1,106,717 - -1.9 1,106,717 - -1.1 1,106,717 - -1.3 1,106,717 - -1.3 1,106,717 - +1.2 1,106,717 - -0.9 1,107,057 + MPMX19_01069 0.43 +0.8 1,107,057 + MPMX19_01069 0.43 -0.6 1,107,057 + MPMX19_01069 0.43 +0.7 1,107,057 + MPMX19_01069 0.43 -2.6 1,107,057 + MPMX19_01069 0.43 -1.3 1,107,058 - MPMX19_01069 0.43 -0.2 1,107,058 - MPMX19_01069 0.43 +0.6 1,107,058 - MPMX19_01069 0.43 -1.0 1,107,058 - MPMX19_01069 0.43 -0.2 1,107,058 - MPMX19_01069 0.43 -2.1 1,107,190 + MPMX19_01069 0.60 -1.1 1,107,190 + MPMX19_01069 0.60 -0.9 1,107,190 + MPMX19_01069 0.60 +0.2 1,107,190 + MPMX19_01069 0.60 -2.1 1,107,190 + MPMX19_01069 0.60 +0.1 1,107,190 + MPMX19_01069 0.60 -0.5 1,107,191 - MPMX19_01069 0.60 +1.0 1,107,191 - MPMX19_01069 0.60 -0.3 1,107,191 - MPMX19_01069 0.60 -1.4 1,107,191 - MPMX19_01069 0.60 -0.4 1,107,191 - MPMX19_01069 0.60 +1.2 1,107,191 - MPMX19_01069 0.60 -0.0 1,107,191 - MPMX19_01069 0.60 -2.3 1,107,191 - MPMX19_01069 0.60 -0.1 1,107,191 - MPMX19_01069 0.60 -1.1 1,107,191 - MPMX19_01069 0.60 +0.3 1,107,191 - MPMX19_01069 0.60 -2.3 1,107,191 - MPMX19_01069 0.60 +0.1 1,107,504 + +0.4 1,107,504 + -0.4 1,107,504 + -0.2 1,107,505 - +0.1 1,107,505 - -1.3 1,107,505 - -0.1 1,107,513 + -0.8 1,107,513 + -1.3 1,107,513 + -0.5 1,107,513 + -1.5 1,107,513 + -0.4 1,107,514 - -0.9 1,107,514 - -0.1 1,107,514 - -1.2 1,107,559 + -2.2 1,107,559 + +0.4 1,107,559 + +0.1 1,107,559 + -0.5 1,107,559 + -1.1 1,107,559 + +0.6 1,107,559 + +1.2 1,107,559 + +0.1 1,107,559 + -0.1 1,107,559 + -1.9 1,107,559 + -0.9 1,107,559 + +0.4 1,107,559 + +0.6 1,107,559 + -0.6 1,107,559 + +0.8 1,107,559 + -1.6 1,107,559 + +0.4 1,107,559 + -0.8 1,107,559 + -1.6 1,107,559 + -0.1 1,107,559 + -2.4 1,107,559 + -0.8 1,107,559 + -0.9 1,107,559 + +0.1 1,107,559 + -0.3 1,107,559 + -1.4 1,107,559 + -1.0 1,107,559 + +0.1 1,107,559 + -0.5 1,107,559 + +0.5 1,107,559 + +0.8 1,107,559 + -0.9 1,107,559 + -1.5 1,107,559 + +1.0 1,107,559 + -0.1 1,107,559 + -0.2 1,107,559 + +1.3 1,107,560 - +0.4 1,107,560 - +0.2 1,107,560 - -0.3 1,107,560 - +1.7 1,107,560 - +0.6 1,107,560 - -0.4 1,107,560 - -0.6 1,107,560 - -0.9 1,107,560 - +0.9 1,107,560 - -1.9 1,107,560 - -0.8 1,107,560 - -0.1 1,107,560 - -0.5 1,107,560 - +2.7 1,107,560 - -0.5 1,107,560 - -0.7 1,107,560 - -0.8 1,107,560 - -0.0 1,107,560 - +2.5 1,107,560 - -0.4 1,107,560 - -1.3 1,107,560 - +1.1 1,107,560 - -1.5 1,107,560 - -0.6 1,107,560 - -0.0 1,107,560 - +0.8 1,107,560 - -1.5 1,107,560 - +0.1 1,107,560 - +0.5 1,107,560 - -1.3 1,107,560 - -1.1 1,107,560 - +0.3 1,107,560 - +2.0 1,107,560 - -0.2 1,107,560 - -0.3 1,107,560 - -0.6 1,107,560 - -0.6 1,107,560 - -0.4 1,107,560 - -0.3 1,107,560 - -0.1 1,107,560 - -0.3 1,107,560 - -0.2 1,107,593 + +0.1 1,107,593 + -0.9 1,107,593 + +0.1 1,107,593 + -1.9 1,107,593 + +0.5 1,107,594 - +1.5
Or see this region's nucleotide sequence