Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00941 and MPMX19_00942 are separated by 94 nucleotides MPMX19_00942 and MPMX19_00943 are separated by 39 nucleotides MPMX19_00943 and MPMX19_00944 are separated by 244 nucleotides MPMX19_00944 and MPMX19_00945 are separated by 215 nucleotides
MPMX19_00941: MPMX19_00941 - Endolytic murein transglycosylase, at 977,660 to 978,667
_00941
MPMX19_00942: MPMX19_00942 - hypothetical protein, at 978,762 to 979,067
_00942
MPMX19_00943: MPMX19_00943 - hypothetical protein, at 979,107 to 979,346
_00943
MPMX19_00944: MPMX19_00944 - hypothetical protein, at 979,591 to 981,594
_00944
MPMX19_00945: MPMX19_00945 - hypothetical protein, at 981,810 to 983,051
_00945
Position (kb) 979
980
981
982 Strain fitness (log2 ratio) -2
-1
0
1 at 978.697 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.760 kb on + strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.761 kb on - strand at 978.801 kb on + strand, within MPMX19_00942 at 978.801 kb on + strand, within MPMX19_00942 at 978.802 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.978 kb on - strand, within MPMX19_00942 at 978.985 kb on + strand, within MPMX19_00942 at 978.985 kb on + strand, within MPMX19_00942 at 978.985 kb on + strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 978.986 kb on - strand, within MPMX19_00942 at 979.175 kb on - strand, within MPMX19_00943 at 979.214 kb on + strand, within MPMX19_00943 at 979.215 kb on - strand, within MPMX19_00943 at 979.375 kb on + strand at 979.375 kb on + strand at 979.375 kb on + strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.376 kb on - strand at 979.385 kb on + strand at 979.386 kb on - strand at 979.425 kb on + strand at 979.425 kb on + strand at 979.436 kb on + strand at 979.437 kb on - strand at 979.442 kb on + strand at 979.442 kb on + strand at 979.443 kb on - strand at 979.443 kb on - strand at 979.453 kb on + strand at 979.453 kb on + strand at 979.454 kb on - strand at 979.454 kb on - strand at 979.460 kb on + strand at 979.460 kb on + strand at 979.460 kb on + strand at 979.460 kb on + strand at 979.460 kb on + strand at 979.461 kb on - strand at 979.461 kb on - strand at 979.461 kb on - strand at 979.464 kb on + strand at 979.464 kb on + strand at 979.465 kb on - strand at 979.487 kb on + strand at 980.390 kb on + strand, within MPMX19_00944 at 980.390 kb on + strand, within MPMX19_00944 at 980.390 kb on + strand, within MPMX19_00944 at 980.390 kb on + strand, within MPMX19_00944 at 980.390 kb on + strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 980.391 kb on - strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.010 kb on + strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.011 kb on - strand, within MPMX19_00944 at 981.143 kb on + strand, within MPMX19_00944 at 981.143 kb on + strand, within MPMX19_00944 at 981.143 kb on + strand, within MPMX19_00944 at 981.143 kb on + strand, within MPMX19_00944 at 981.144 kb on - strand, within MPMX19_00944 at 981.144 kb on - strand, within MPMX19_00944 at 981.144 kb on - strand, within MPMX19_00944 at 981.144 kb on - strand, within MPMX19_00944 at 981.420 kb on - strand at 981.420 kb on - strand at 981.446 kb on + strand at 981.446 kb on + strand at 981.446 kb on + strand at 981.447 kb on - strand at 981.447 kb on - strand at 981.447 kb on - strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.500 kb on + strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.501 kb on - strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.739 kb on + strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.740 kb on - strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.803 kb on + strand at 981.804 kb on - strand at 981.804 kb on - strand at 981.804 kb on - strand at 981.804 kb on - strand at 981.804 kb on - strand at 982.000 kb on + strand, within MPMX19_00945 at 982.000 kb on + strand, within MPMX19_00945 at 982.000 kb on + strand, within MPMX19_00945 at 982.000 kb on + strand, within MPMX19_00945 at 982.000 kb on + strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.001 kb on - strand, within MPMX19_00945 at 982.251 kb on + strand, within MPMX19_00945 at 982.251 kb on + strand, within MPMX19_00945 at 982.251 kb on + strand, within MPMX19_00945 at 982.251 kb on + strand, within MPMX19_00945 at 982.252 kb on - strand, within MPMX19_00945 at 982.252 kb on - strand, within MPMX19_00945 at 982.252 kb on - strand, within MPMX19_00945
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 978,697 + -0.4 978,760 + -1.3 978,760 + -0.6 978,760 + -1.4 978,760 + -0.8 978,760 + +1.2 978,760 + -1.7 978,760 + -0.3 978,760 + -0.8 978,760 + -0.2 978,760 + +0.0 978,760 + -1.3 978,760 + -0.6 978,760 + +0.7 978,760 + +0.1 978,760 + -1.3 978,760 + -0.2 978,760 + +0.4 978,760 + -0.3 978,760 + -0.4 978,760 + -0.6 978,760 + -0.5 978,760 + -1.5 978,760 + -0.1 978,760 + -0.4 978,760 + -0.2 978,761 - -1.5 978,761 - -1.6 978,761 - -0.6 978,761 - -0.2 978,761 - -0.1 978,761 - +1.5 978,761 - +1.3 978,761 - -1.9 978,761 - +0.3 978,761 - -0.9 978,761 - -2.1 978,761 - +0.3 978,761 - +0.1 978,761 - +0.2 978,761 - -2.1 978,761 - -2.0 978,761 - -0.2 978,761 - -2.0 978,761 - -0.6 978,761 - +0.4 978,761 - -0.1 978,761 - -0.7 978,761 - -0.3 978,761 - -0.2 978,761 - +0.7 978,761 - -0.4 978,761 - +0.4 978,761 - +0.2 978,801 + MPMX19_00942 0.13 +0.7 978,801 + MPMX19_00942 0.13 +0.1 978,802 - MPMX19_00942 0.13 -0.5 978,978 - MPMX19_00942 0.71 +1.0 978,978 - MPMX19_00942 0.71 -0.8 978,978 - MPMX19_00942 0.71 +0.7 978,978 - MPMX19_00942 0.71 -2.3 978,978 - MPMX19_00942 0.71 +0.1 978,978 - MPMX19_00942 0.71 +0.4 978,985 + MPMX19_00942 0.73 -2.0 978,985 + MPMX19_00942 0.73 -0.6 978,985 + MPMX19_00942 0.73 -0.3 978,986 - MPMX19_00942 0.73 +0.1 978,986 - MPMX19_00942 0.73 +0.2 978,986 - MPMX19_00942 0.73 -2.0 978,986 - MPMX19_00942 0.73 +0.7 978,986 - MPMX19_00942 0.73 -0.2 979,175 - MPMX19_00943 0.28 +0.7 979,214 + MPMX19_00943 0.45 +1.1 979,215 - MPMX19_00943 0.45 +1.7 979,375 + -0.5 979,375 + -0.4 979,375 + -2.6 979,376 - -0.6 979,376 - -1.6 979,376 - +0.0 979,376 - -2.0 979,376 - -2.3 979,376 - -2.1 979,376 - +0.7 979,376 - -0.8 979,376 - +0.2 979,385 + -0.2 979,386 - +0.6 979,425 + +0.2 979,425 + +0.7 979,436 + -0.5 979,437 - +0.2 979,442 + +0.2 979,442 + +1.7 979,443 - -0.9 979,443 - +0.6 979,453 + -0.2 979,453 + -1.6 979,454 - -1.5 979,454 - -1.5 979,460 + -1.1 979,460 + -1.9 979,460 + -1.0 979,460 + -0.9 979,460 + +0.7 979,461 - -0.4 979,461 - +1.7 979,461 - +0.1 979,464 + +1.3 979,464 + +0.0 979,465 - -0.6 979,487 + +0.9 980,390 + MPMX19_00944 0.40 -0.6 980,390 + MPMX19_00944 0.40 +0.4 980,390 + MPMX19_00944 0.40 -0.7 980,390 + MPMX19_00944 0.40 -1.4 980,390 + MPMX19_00944 0.40 +1.0 980,391 - MPMX19_00944 0.40 -0.4 980,391 - MPMX19_00944 0.40 +0.7 980,391 - MPMX19_00944 0.40 +0.5 980,391 - MPMX19_00944 0.40 +0.1 980,391 - MPMX19_00944 0.40 -0.0 980,391 - MPMX19_00944 0.40 -0.6 981,010 + MPMX19_00944 0.71 +0.0 981,010 + MPMX19_00944 0.71 -1.4 981,010 + MPMX19_00944 0.71 -0.6 981,010 + MPMX19_00944 0.71 -0.5 981,010 + MPMX19_00944 0.71 +0.3 981,010 + MPMX19_00944 0.71 +0.6 981,010 + MPMX19_00944 0.71 -0.3 981,010 + MPMX19_00944 0.71 +0.8 981,010 + MPMX19_00944 0.71 +0.8 981,010 + MPMX19_00944 0.71 +1.7 981,010 + MPMX19_00944 0.71 +0.2 981,010 + MPMX19_00944 0.71 -0.9 981,010 + MPMX19_00944 0.71 -0.2 981,010 + MPMX19_00944 0.71 -1.3 981,010 + MPMX19_00944 0.71 +0.4 981,011 - MPMX19_00944 0.71 +0.7 981,011 - MPMX19_00944 0.71 -0.6 981,011 - MPMX19_00944 0.71 -0.2 981,011 - MPMX19_00944 0.71 +0.4 981,011 - MPMX19_00944 0.71 -0.3 981,011 - MPMX19_00944 0.71 +0.1 981,011 - MPMX19_00944 0.71 -0.9 981,011 - MPMX19_00944 0.71 +0.4 981,011 - MPMX19_00944 0.71 -0.5 981,011 - MPMX19_00944 0.71 -0.5 981,011 - MPMX19_00944 0.71 -0.2 981,011 - MPMX19_00944 0.71 -2.0 981,011 - MPMX19_00944 0.71 +0.4 981,011 - MPMX19_00944 0.71 -0.1 981,011 - MPMX19_00944 0.71 -0.2 981,011 - MPMX19_00944 0.71 -1.5 981,011 - MPMX19_00944 0.71 +0.1 981,011 - MPMX19_00944 0.71 -0.6 981,011 - MPMX19_00944 0.71 -0.5 981,011 - MPMX19_00944 0.71 -0.3 981,011 - MPMX19_00944 0.71 -0.3 981,011 - MPMX19_00944 0.71 +0.5 981,011 - MPMX19_00944 0.71 -0.0 981,011 - MPMX19_00944 0.71 -2.1 981,011 - MPMX19_00944 0.71 -1.0 981,143 + MPMX19_00944 0.77 -0.9 981,143 + MPMX19_00944 0.77 -0.4 981,143 + MPMX19_00944 0.77 -0.6 981,143 + MPMX19_00944 0.77 -0.7 981,144 - MPMX19_00944 0.77 +0.4 981,144 - MPMX19_00944 0.77 +0.2 981,144 - MPMX19_00944 0.77 +0.5 981,144 - MPMX19_00944 0.77 +0.2 981,420 - -1.5 981,420 - -1.1 981,446 + -2.2 981,446 + -0.6 981,446 + +1.0 981,447 - +0.2 981,447 - -0.3 981,447 - -0.6 981,500 + -0.8 981,500 + +0.1 981,500 + +0.9 981,500 + -0.8 981,500 + -2.0 981,500 + +0.7 981,500 + -0.8 981,500 + +1.2 981,500 + -1.5 981,500 + -0.0 981,500 + -0.7 981,500 + -1.3 981,501 - +1.4 981,501 - +0.0 981,501 - +1.1 981,501 - +0.3 981,501 - +0.0 981,501 - -0.8 981,501 - -0.5 981,501 - -1.9 981,501 - -0.0 981,501 - -1.4 981,501 - -0.0 981,501 - -0.4 981,501 - -0.9 981,739 + -0.8 981,739 + +0.1 981,739 + -0.2 981,739 + -1.6 981,739 + +0.7 981,739 + -0.2 981,739 + -2.3 981,739 + -0.9 981,739 + -0.3 981,739 + -2.1 981,739 + -0.9 981,739 + +0.7 981,739 + -0.8 981,740 - -0.1 981,740 - -1.1 981,740 - -1.9 981,740 - -1.1 981,740 - +0.5 981,740 - +0.9 981,740 - -1.3 981,740 - +0.4 981,740 - -1.1 981,803 + -0.6 981,803 + +0.5 981,803 + -0.2 981,803 + +1.1 981,803 + -1.9 981,803 + -2.2 981,803 + +0.1 981,803 + -0.1 981,803 + -0.4 981,804 - +0.2 981,804 - +0.1 981,804 - -0.9 981,804 - -0.9 981,804 - -0.9 982,000 + MPMX19_00945 0.15 +0.2 982,000 + MPMX19_00945 0.15 +0.9 982,000 + MPMX19_00945 0.15 -1.5 982,000 + MPMX19_00945 0.15 +0.3 982,000 + MPMX19_00945 0.15 +0.3 982,001 - MPMX19_00945 0.15 +0.5 982,001 - MPMX19_00945 0.15 +0.3 982,001 - MPMX19_00945 0.15 +0.8 982,001 - MPMX19_00945 0.15 -1.8 982,001 - MPMX19_00945 0.15 +0.1 982,251 + MPMX19_00945 0.36 +0.9 982,251 + MPMX19_00945 0.36 +0.2 982,251 + MPMX19_00945 0.36 -0.9 982,251 + MPMX19_00945 0.36 +1.0 982,252 - MPMX19_00945 0.36 -2.6 982,252 - MPMX19_00945 0.36 +1.2 982,252 - MPMX19_00945 0.36 -1.1
Or see this region's nucleotide sequence