Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00921 and MPMX19_00922 are separated by 141 nucleotides MPMX19_00922 and MPMX19_00923 are separated by 42 nucleotides MPMX19_00923 and MPMX19_00924 overlap by 1 nucleotides
MPMX19_00921: MPMX19_00921 - hypothetical protein, at 959,278 to 961,383
_00921
MPMX19_00922: MPMX19_00922 - Isocitrate dehydrogenase [NADP], at 961,525 to 962,970
_00922
MPMX19_00923: MPMX19_00923 - hypothetical protein, at 963,013 to 963,564
_00923
MPMX19_00924: MPMX19_00924 - hypothetical protein, at 963,564 to 964,364
_00924
Position (kb) 961
962
963 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.526 kb on + strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.527 kb on - strand, within MPMX19_00921 at 960.682 kb on + strand, within MPMX19_00921 at 960.682 kb on + strand, within MPMX19_00921 at 960.682 kb on + strand, within MPMX19_00921 at 960.682 kb on + strand, within MPMX19_00921 at 960.683 kb on - strand, within MPMX19_00921 at 960.683 kb on - strand, within MPMX19_00921 at 960.753 kb on + strand, within MPMX19_00921 at 960.753 kb on + strand, within MPMX19_00921 at 960.754 kb on - strand, within MPMX19_00921 at 960.760 kb on + strand, within MPMX19_00921 at 960.760 kb on + strand, within MPMX19_00921 at 960.760 kb on + strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.761 kb on - strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.940 kb on + strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 960.941 kb on - strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.030 kb on + strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.031 kb on - strand, within MPMX19_00921 at 961.138 kb on + strand, within MPMX19_00921 at 961.138 kb on + strand, within MPMX19_00921 at 961.138 kb on + strand, within MPMX19_00921 at 961.139 kb on - strand, within MPMX19_00921 at 961.139 kb on - strand, within MPMX19_00921 at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.231 kb on + strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.232 kb on - strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.233 kb on + strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.234 kb on - strand at 961.255 kb on + strand at 961.256 kb on - strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.276 kb on + strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.277 kb on - strand at 961.436 kb on + strand at 961.437 kb on - strand at 961.495 kb on + strand at 961.495 kb on + strand at 961.495 kb on + strand at 961.495 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.992 kb on - strand at 962.992 kb on - strand at 963.106 kb on + strand, within MPMX19_00923 at 963.106 kb on + strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.436 kb on + strand, within MPMX19_00923 at 963.437 kb on - strand, within MPMX19_00923 at 963.437 kb on - strand, within MPMX19_00923 at 963.782 kb on + strand, within MPMX19_00924
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 960,526 + MPMX19_00921 0.59 +0.2 960,526 + MPMX19_00921 0.59 -1.5 960,526 + MPMX19_00921 0.59 -1.6 960,526 + MPMX19_00921 0.59 +0.5 960,526 + MPMX19_00921 0.59 -0.2 960,526 + MPMX19_00921 0.59 +0.5 960,526 + MPMX19_00921 0.59 -0.8 960,526 + MPMX19_00921 0.59 +0.4 960,526 + MPMX19_00921 0.59 -0.9 960,526 + MPMX19_00921 0.59 +0.7 960,526 + MPMX19_00921 0.59 +0.4 960,526 + MPMX19_00921 0.59 +0.7 960,526 + MPMX19_00921 0.59 -1.4 960,526 + MPMX19_00921 0.59 -0.6 960,526 + MPMX19_00921 0.59 -0.2 960,527 - MPMX19_00921 0.59 +0.0 960,527 - MPMX19_00921 0.59 +0.2 960,527 - MPMX19_00921 0.59 -1.3 960,527 - MPMX19_00921 0.59 -0.5 960,527 - MPMX19_00921 0.59 -0.7 960,527 - MPMX19_00921 0.59 -1.1 960,527 - MPMX19_00921 0.59 -1.1 960,527 - MPMX19_00921 0.59 -2.0 960,527 - MPMX19_00921 0.59 -0.8 960,527 - MPMX19_00921 0.59 +0.3 960,527 - MPMX19_00921 0.59 -1.8 960,527 - MPMX19_00921 0.59 -1.9 960,527 - MPMX19_00921 0.59 -0.7 960,527 - MPMX19_00921 0.59 -0.8 960,527 - MPMX19_00921 0.59 -0.5 960,527 - MPMX19_00921 0.59 -0.8 960,527 - MPMX19_00921 0.59 -0.7 960,527 - MPMX19_00921 0.59 -0.1 960,682 + MPMX19_00921 0.67 +0.6 960,682 + MPMX19_00921 0.67 -0.1 960,682 + MPMX19_00921 0.67 -0.0 960,682 + MPMX19_00921 0.67 -0.9 960,683 - MPMX19_00921 0.67 -1.9 960,683 - MPMX19_00921 0.67 -0.1 960,753 + MPMX19_00921 0.70 +0.4 960,753 + MPMX19_00921 0.70 -1.5 960,754 - MPMX19_00921 0.70 +0.4 960,760 + MPMX19_00921 0.70 -0.9 960,760 + MPMX19_00921 0.70 -0.7 960,760 + MPMX19_00921 0.70 -0.3 960,761 - MPMX19_00921 0.70 +0.3 960,761 - MPMX19_00921 0.70 -0.6 960,761 - MPMX19_00921 0.70 -0.1 960,761 - MPMX19_00921 0.70 +1.1 960,761 - MPMX19_00921 0.70 -1.0 960,761 - MPMX19_00921 0.70 -0.0 960,761 - MPMX19_00921 0.70 -0.1 960,761 - MPMX19_00921 0.70 +1.1 960,761 - MPMX19_00921 0.70 +0.4 960,761 - MPMX19_00921 0.70 -0.3 960,940 + MPMX19_00921 0.79 -1.0 960,940 + MPMX19_00921 0.79 -0.1 960,940 + MPMX19_00921 0.79 -0.7 960,940 + MPMX19_00921 0.79 -0.6 960,940 + MPMX19_00921 0.79 -0.3 960,940 + MPMX19_00921 0.79 +0.6 960,940 + MPMX19_00921 0.79 -0.6 960,940 + MPMX19_00921 0.79 -1.3 960,940 + MPMX19_00921 0.79 -0.1 960,940 + MPMX19_00921 0.79 -0.0 960,940 + MPMX19_00921 0.79 +0.1 960,940 + MPMX19_00921 0.79 +0.2 960,940 + MPMX19_00921 0.79 -0.4 960,940 + MPMX19_00921 0.79 +0.4 960,940 + MPMX19_00921 0.79 +0.3 960,940 + MPMX19_00921 0.79 +0.9 960,940 + MPMX19_00921 0.79 -1.1 960,940 + MPMX19_00921 0.79 +0.8 960,940 + MPMX19_00921 0.79 +0.6 960,941 - MPMX19_00921 0.79 +0.1 960,941 - MPMX19_00921 0.79 -0.8 960,941 - MPMX19_00921 0.79 +0.1 960,941 - MPMX19_00921 0.79 -1.4 960,941 - MPMX19_00921 0.79 -1.7 960,941 - MPMX19_00921 0.79 -0.8 960,941 - MPMX19_00921 0.79 -1.1 960,941 - MPMX19_00921 0.79 -1.5 960,941 - MPMX19_00921 0.79 -0.9 960,941 - MPMX19_00921 0.79 +0.8 960,941 - MPMX19_00921 0.79 -0.8 960,941 - MPMX19_00921 0.79 +1.7 960,941 - MPMX19_00921 0.79 +0.1 960,941 - MPMX19_00921 0.79 +0.6 960,941 - MPMX19_00921 0.79 -1.3 960,941 - MPMX19_00921 0.79 -1.5 960,941 - MPMX19_00921 0.79 -2.6 960,941 - MPMX19_00921 0.79 +0.7 960,941 - MPMX19_00921 0.79 -0.1 961,030 + MPMX19_00921 0.83 +0.5 961,030 + MPMX19_00921 0.83 +1.3 961,030 + MPMX19_00921 0.83 -1.2 961,030 + MPMX19_00921 0.83 -0.6 961,030 + MPMX19_00921 0.83 -0.9 961,030 + MPMX19_00921 0.83 -0.8 961,030 + MPMX19_00921 0.83 -0.5 961,030 + MPMX19_00921 0.83 -0.6 961,030 + MPMX19_00921 0.83 -0.6 961,030 + MPMX19_00921 0.83 -0.2 961,030 + MPMX19_00921 0.83 +0.1 961,030 + MPMX19_00921 0.83 -2.3 961,031 - MPMX19_00921 0.83 -1.5 961,031 - MPMX19_00921 0.83 +0.1 961,031 - MPMX19_00921 0.83 +0.2 961,031 - MPMX19_00921 0.83 +0.3 961,031 - MPMX19_00921 0.83 +0.8 961,031 - MPMX19_00921 0.83 -0.4 961,031 - MPMX19_00921 0.83 -0.3 961,031 - MPMX19_00921 0.83 +0.2 961,031 - MPMX19_00921 0.83 +0.4 961,031 - MPMX19_00921 0.83 -0.1 961,031 - MPMX19_00921 0.83 +0.8 961,031 - MPMX19_00921 0.83 +0.1 961,031 - MPMX19_00921 0.83 +1.7 961,031 - MPMX19_00921 0.83 -0.8 961,138 + MPMX19_00921 0.88 -0.2 961,138 + MPMX19_00921 0.88 -2.6 961,138 + MPMX19_00921 0.88 +0.7 961,139 - MPMX19_00921 0.88 -1.9 961,139 - MPMX19_00921 0.88 -0.8 961,231 + -0.3 961,231 + -0.7 961,231 + -1.4 961,231 + -0.6 961,231 + +0.8 961,231 + +1.1 961,231 + +0.8 961,231 + +0.1 961,231 + +0.7 961,231 + -1.5 961,231 + -0.1 961,231 + -0.3 961,231 + -0.5 961,231 + -0.5 961,231 + +0.7 961,231 + -0.1 961,232 - +0.1 961,232 - -1.1 961,232 - -1.3 961,232 - -1.2 961,232 - -0.5 961,232 - +0.5 961,232 - +0.3 961,232 - -0.8 961,232 - -1.6 961,232 - -0.9 961,232 - -0.3 961,232 - -0.3 961,232 - -1.0 961,232 - +1.5 961,232 - +1.4 961,232 - +0.4 961,232 - +0.2 961,232 - +0.9 961,232 - -0.1 961,232 - +0.5 961,232 - +1.5 961,233 + +1.5 961,233 + -0.4 961,233 + +0.7 961,233 + -1.3 961,233 + +0.1 961,233 + -0.3 961,233 + +0.1 961,233 + +0.4 961,233 + -1.5 961,233 + -0.5 961,233 + -1.1 961,233 + +0.0 961,233 + -1.4 961,233 + -0.6 961,233 + +0.0 961,233 + -0.1 961,233 + -2.1 961,233 + +0.1 961,233 + -0.5 961,233 + -2.0 961,233 + +0.2 961,233 + -1.5 961,233 + -1.1 961,233 + +0.4 961,234 - -0.6 961,234 - -0.1 961,234 - +0.7 961,234 - -0.5 961,234 - +0.7 961,234 - -0.4 961,234 - -0.9 961,234 - -0.5 961,234 - -0.6 961,234 - -0.1 961,234 - +0.8 961,234 - +0.1 961,234 - -0.0 961,234 - +0.7 961,234 - -1.5 961,234 - -0.8 961,234 - -1.9 961,255 + -0.0 961,256 - +0.1 961,276 + -0.2 961,276 + -0.3 961,276 + -0.5 961,276 + +0.3 961,276 + +1.7 961,276 + -0.1 961,276 + +0.5 961,276 + -1.0 961,276 + +1.9 961,276 + -1.2 961,276 + +0.2 961,276 + -0.1 961,276 + -0.1 961,277 - -0.2 961,277 - -1.2 961,277 - +0.0 961,277 - -0.3 961,277 - -0.4 961,277 - +0.1 961,277 - +0.7 961,277 - -0.0 961,277 - -2.1 961,277 - +0.2 961,277 - -0.7 961,277 - -0.4 961,277 - +1.7 961,277 - -0.7 961,277 - +2.2 961,436 + +0.2 961,437 - -0.9 961,495 + -1.6 961,495 + -0.3 961,495 + -0.8 961,495 + -2.1 962,991 + -3.3 962,991 + +0.7 962,991 + +1.7 962,991 + +0.5 962,991 + +1.6 962,992 - -1.3 962,992 - -1.4 963,106 + MPMX19_00923 0.17 +1.4 963,106 + MPMX19_00923 0.17 -0.1 963,107 - MPMX19_00923 0.17 +0.3 963,107 - MPMX19_00923 0.17 +0.7 963,107 - MPMX19_00923 0.17 +0.7 963,107 - MPMX19_00923 0.17 +0.7 963,107 - MPMX19_00923 0.17 +0.6 963,107 - MPMX19_00923 0.17 -0.8 963,107 - MPMX19_00923 0.17 -1.9 963,436 + MPMX19_00923 0.77 +0.3 963,437 - MPMX19_00923 0.77 -1.8 963,437 - MPMX19_00923 0.77 -0.7 963,782 + MPMX19_00924 0.27 -1.8
Or see this region's nucleotide sequence