Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00919

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00918 and MPMX19_00919 are separated by 503 nucleotidesMPMX19_00919 and MPMX19_00920 are separated by 103 nucleotides MPMX19_00918: MPMX19_00918 - hypothetical protein, at 955,060 to 955,410 _00918 MPMX19_00919: MPMX19_00919 - hypothetical protein, at 955,914 to 956,615 _00919 MPMX19_00920: MPMX19_00920 - hypothetical protein, at 956,719 to 958,974 _00920 Position (kb) 955 956 957Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 954.964 kb on + strandat 954.964 kb on + strandat 954.964 kb on + strandat 954.964 kb on + strandat 954.964 kb on + strandat 954.965 kb on - strandat 954.965 kb on - strandat 954.965 kb on - strandat 954.965 kb on - strandat 954.965 kb on - strandat 954.965 kb on - strandat 955.001 kb on + strandat 955.001 kb on + strandat 955.001 kb on + strandat 955.001 kb on + strandat 955.002 kb on - strandat 955.002 kb on - strandat 955.002 kb on - strandat 955.002 kb on - strandat 955.053 kb on + strandat 955.053 kb on + strandat 955.054 kb on - strandat 955.160 kb on + strand, within MPMX19_00918at 955.160 kb on + strand, within MPMX19_00918at 955.160 kb on + strand, within MPMX19_00918at 955.160 kb on + strand, within MPMX19_00918at 955.160 kb on + strand, within MPMX19_00918at 955.160 kb on + strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.161 kb on - strand, within MPMX19_00918at 955.228 kb on + strand, within MPMX19_00918at 955.228 kb on + strand, within MPMX19_00918at 955.228 kb on + strand, within MPMX19_00918at 955.228 kb on + strand, within MPMX19_00918at 955.228 kb on + strand, within MPMX19_00918at 955.229 kb on - strand, within MPMX19_00918at 955.229 kb on - strand, within MPMX19_00918at 955.229 kb on - strand, within MPMX19_00918at 955.229 kb on - strand, within MPMX19_00918at 955.414 kb on + strandat 955.414 kb on + strandat 955.417 kb on - strandat 955.417 kb on - strandat 955.444 kb on + strandat 955.501 kb on + strandat 955.618 kb on + strandat 955.618 kb on + strandat 955.638 kb on - strandat 955.685 kb on + strandat 955.685 kb on + strandat 955.685 kb on + strandat 955.836 kb on + strandat 955.864 kb on + strandat 955.864 kb on + strandat 955.864 kb on + strandat 955.864 kb on + strandat 955.864 kb on + strandat 955.864 kb on + strandat 955.864 kb on + strandat 955.865 kb on - strandat 955.865 kb on - strandat 955.865 kb on - strandat 955.865 kb on - strandat 955.878 kb on + strandat 955.879 kb on - strandat 955.879 kb on - strandat 956.130 kb on + strand, within MPMX19_00919at 956.130 kb on + strand, within MPMX19_00919at 956.130 kb on + strand, within MPMX19_00919at 956.130 kb on + strand, within MPMX19_00919at 956.130 kb on + strand, within MPMX19_00919at 956.130 kb on + strand, within MPMX19_00919at 956.130 kb on + strand, within MPMX19_00919at 956.130 kb on + strand, within MPMX19_00919at 956.130 kb on + strand, within MPMX19_00919at 956.130 kb on + strand, within MPMX19_00919at 956.131 kb on - strand, within MPMX19_00919at 956.131 kb on - strand, within MPMX19_00919at 956.131 kb on - strand, within MPMX19_00919at 956.131 kb on - strand, within MPMX19_00919at 956.131 kb on - strand, within MPMX19_00919at 956.131 kb on - strand, within MPMX19_00919at 956.131 kb on - strand, within MPMX19_00919at 956.131 kb on - strand, within MPMX19_00919at 956.131 kb on - strand, within MPMX19_00919at 956.133 kb on + strand, within MPMX19_00919at 956.133 kb on + strand, within MPMX19_00919at 956.133 kb on + strand, within MPMX19_00919at 956.133 kb on + strand, within MPMX19_00919at 956.133 kb on + strand, within MPMX19_00919at 956.481 kb on - strand, within MPMX19_00919at 956.520 kb on + strand, within MPMX19_00919at 956.520 kb on + strand, within MPMX19_00919at 956.520 kb on + strand, within MPMX19_00919at 956.520 kb on + strand, within MPMX19_00919at 956.521 kb on - strand, within MPMX19_00919at 956.521 kb on - strand, within MPMX19_00919at 956.521 kb on - strand, within MPMX19_00919at 956.550 kb on + strandat 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.527 kb on + strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920at 957.528 kb on - strand, within MPMX19_00920

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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954,964 + -0.2
954,964 + -0.0
954,964 + +0.4
954,964 + -0.2
954,964 + -1.3
954,965 - +0.1
954,965 - -0.9
954,965 - +0.1
954,965 - -1.7
954,965 - +0.9
954,965 - +1.1
955,001 + -0.8
955,001 + -0.3
955,001 + -1.3
955,001 + +1.7
955,002 - -0.0
955,002 - -0.9
955,002 - +1.2
955,002 - +0.1
955,053 + -1.5
955,053 + -1.2
955,054 - -0.2
955,160 + MPMX19_00918 0.28 +1.9
955,160 + MPMX19_00918 0.28 +1.1
955,160 + MPMX19_00918 0.28 -1.0
955,160 + MPMX19_00918 0.28 -0.4
955,160 + MPMX19_00918 0.28 -0.4
955,160 + MPMX19_00918 0.28 -1.3
955,161 - MPMX19_00918 0.29 -0.1
955,161 - MPMX19_00918 0.29 +0.1
955,161 - MPMX19_00918 0.29 +1.4
955,161 - MPMX19_00918 0.29 -0.9
955,161 - MPMX19_00918 0.29 -0.2
955,161 - MPMX19_00918 0.29 +0.5
955,161 - MPMX19_00918 0.29 +0.2
955,161 - MPMX19_00918 0.29 +0.4
955,161 - MPMX19_00918 0.29 +0.5
955,161 - MPMX19_00918 0.29 -2.1
955,228 + MPMX19_00918 0.48 +0.3
955,228 + MPMX19_00918 0.48 -0.0
955,228 + MPMX19_00918 0.48 +0.6
955,228 + MPMX19_00918 0.48 -1.6
955,228 + MPMX19_00918 0.48 +1.3
955,229 - MPMX19_00918 0.48 -0.0
955,229 - MPMX19_00918 0.48 -1.5
955,229 - MPMX19_00918 0.48 -1.2
955,229 - MPMX19_00918 0.48 -0.0
955,414 + +1.4
955,414 + -0.8
955,417 - -0.6
955,417 - -0.3
955,444 + -0.3
955,501 + -2.2
955,618 + +0.3
955,618 + -0.1
955,638 - +0.1
955,685 + -0.5
955,685 + -1.8
955,685 + -1.1
955,836 + -1.0
955,864 + -0.4
955,864 + -1.0
955,864 + -0.3
955,864 + -0.1
955,864 + +0.7
955,864 + -0.2
955,864 + -0.9
955,865 - -0.8
955,865 - +0.2
955,865 - +1.4
955,865 - +0.7
955,878 + -0.0
955,879 - +0.7
955,879 - -1.8
956,130 + MPMX19_00919 0.31 +0.1
956,130 + MPMX19_00919 0.31 -0.5
956,130 + MPMX19_00919 0.31 +0.7
956,130 + MPMX19_00919 0.31 +0.1
956,130 + MPMX19_00919 0.31 -1.5
956,130 + MPMX19_00919 0.31 +0.4
956,130 + MPMX19_00919 0.31 -1.3
956,130 + MPMX19_00919 0.31 -0.3
956,130 + MPMX19_00919 0.31 -1.6
956,130 + MPMX19_00919 0.31 -1.1
956,131 - MPMX19_00919 0.31 -0.5
956,131 - MPMX19_00919 0.31 -0.9
956,131 - MPMX19_00919 0.31 -0.8
956,131 - MPMX19_00919 0.31 -0.9
956,131 - MPMX19_00919 0.31 -1.3
956,131 - MPMX19_00919 0.31 -1.8
956,131 - MPMX19_00919 0.31 -0.0
956,131 - MPMX19_00919 0.31 -1.1
956,131 - MPMX19_00919 0.31 -0.8
956,133 + MPMX19_00919 0.31 -0.2
956,133 + MPMX19_00919 0.31 -0.3
956,133 + MPMX19_00919 0.31 -1.9
956,133 + MPMX19_00919 0.31 +0.4
956,133 + MPMX19_00919 0.31 +0.8
956,481 - MPMX19_00919 0.81 +1.3
956,520 + MPMX19_00919 0.86 -2.0
956,520 + MPMX19_00919 0.86 -0.5
956,520 + MPMX19_00919 0.86 -0.0
956,520 + MPMX19_00919 0.86 +0.4
956,521 - MPMX19_00919 0.86 -1.5
956,521 - MPMX19_00919 0.86 -0.8
956,521 - MPMX19_00919 0.86 -0.6
956,550 + -0.3
957,527 + MPMX19_00920 0.36 -2.2
957,527 + MPMX19_00920 0.36 -1.1
957,527 + MPMX19_00920 0.36 +0.8
957,527 + MPMX19_00920 0.36 -1.3
957,527 + MPMX19_00920 0.36 -0.3
957,527 + MPMX19_00920 0.36 -0.1
957,527 + MPMX19_00920 0.36 -1.5
957,527 + MPMX19_00920 0.36 -0.6
957,527 + MPMX19_00920 0.36 -0.2
957,527 + MPMX19_00920 0.36 -0.5
957,527 + MPMX19_00920 0.36 +0.3
957,527 + MPMX19_00920 0.36 -0.1
957,527 + MPMX19_00920 0.36 -0.3
957,527 + MPMX19_00920 0.36 +0.4
957,528 - MPMX19_00920 0.36 -0.1
957,528 - MPMX19_00920 0.36 -2.8
957,528 - MPMX19_00920 0.36 +0.1
957,528 - MPMX19_00920 0.36 -1.3
957,528 - MPMX19_00920 0.36 -1.6
957,528 - MPMX19_00920 0.36 +1.3
957,528 - MPMX19_00920 0.36 +1.1
957,528 - MPMX19_00920 0.36 -1.0
957,528 - MPMX19_00920 0.36 -1.4
957,528 - MPMX19_00920 0.36 +0.8

Or see this region's nucleotide sequence