Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00908 and MPMX19_00909 are separated by 203 nucleotides MPMX19_00909 and MPMX19_00910 are separated by 47 nucleotides MPMX19_00910 and MPMX19_00911 are separated by 160 nucleotides
MPMX19_00908: MPMX19_00908 - DNA mismatch repair protein MutS, at 942,363 to 945,044
_00908
MPMX19_00909: MPMX19_00909 - hypothetical protein, at 945,248 to 945,778
_00909
MPMX19_00910: MPMX19_00910 - hypothetical protein, at 945,826 to 946,191
_00910
MPMX19_00911: MPMX19_00911 - hypothetical protein, at 946,352 to 946,714
_00911
Position (kb) 945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 944.284 kb on + strand, within MPMX19_00908 at 944.284 kb on + strand, within MPMX19_00908 at 944.284 kb on + strand, within MPMX19_00908 at 944.284 kb on + strand, within MPMX19_00908 at 944.284 kb on + strand, within MPMX19_00908 at 944.284 kb on + strand, within MPMX19_00908 at 944.284 kb on + strand, within MPMX19_00908 at 944.284 kb on + strand, within MPMX19_00908 at 944.284 kb on + strand, within MPMX19_00908 at 944.285 kb on - strand, within MPMX19_00908 at 944.285 kb on - strand, within MPMX19_00908 at 944.285 kb on - strand, within MPMX19_00908 at 944.285 kb on - strand, within MPMX19_00908 at 944.285 kb on - strand, within MPMX19_00908 at 944.285 kb on - strand, within MPMX19_00908 at 944.359 kb on + strand, within MPMX19_00908 at 944.359 kb on + strand, within MPMX19_00908 at 944.359 kb on + strand, within MPMX19_00908 at 944.360 kb on - strand, within MPMX19_00908 at 944.360 kb on - strand, within MPMX19_00908 at 944.800 kb on + strand at 944.800 kb on + strand at 944.800 kb on + strand at 944.800 kb on + strand at 944.801 kb on - strand at 944.801 kb on - strand at 944.801 kb on - strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.926 kb on + strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.927 kb on - strand at 944.944 kb on + strand at 944.945 kb on - strand at 944.945 kb on - strand at 944.986 kb on + strand at 944.986 kb on + strand at 944.986 kb on + strand at 944.986 kb on + strand at 944.987 kb on - strand at 944.987 kb on - strand at 944.987 kb on - strand at 944.987 kb on - strand at 944.987 kb on - strand at 944.987 kb on - strand at 945.091 kb on + strand at 945.091 kb on + strand at 945.091 kb on + strand at 945.091 kb on + strand at 945.092 kb on - strand at 945.092 kb on - strand at 945.092 kb on - strand at 945.092 kb on - strand at 945.092 kb on - strand at 945.092 kb on - strand at 945.092 kb on - strand at 945.092 kb on - strand at 945.092 kb on - strand at 945.092 kb on - strand at 945.101 kb on + strand at 945.102 kb on - strand at 945.102 kb on - strand at 945.210 kb on + strand at 945.210 kb on + strand at 945.210 kb on + strand at 945.210 kb on + strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.211 kb on - strand at 945.216 kb on - strand at 945.216 kb on - strand at 945.216 kb on - strand at 945.216 kb on - strand at 945.216 kb on - strand at 945.216 kb on - strand at 945.216 kb on - strand at 945.216 kb on - strand at 945.232 kb on + strand at 945.446 kb on + strand, within MPMX19_00909 at 945.446 kb on + strand, within MPMX19_00909 at 945.446 kb on + strand, within MPMX19_00909 at 945.494 kb on + strand, within MPMX19_00909 at 945.494 kb on + strand, within MPMX19_00909 at 945.494 kb on + strand, within MPMX19_00909 at 945.494 kb on + strand, within MPMX19_00909 at 945.494 kb on + strand, within MPMX19_00909 at 945.494 kb on + strand, within MPMX19_00909 at 945.495 kb on - strand, within MPMX19_00909 at 945.495 kb on - strand, within MPMX19_00909 at 945.495 kb on - strand, within MPMX19_00909 at 945.495 kb on - strand, within MPMX19_00909 at 945.495 kb on - strand, within MPMX19_00909 at 945.598 kb on + strand, within MPMX19_00909 at 945.598 kb on + strand, within MPMX19_00909 at 945.599 kb on - strand, within MPMX19_00909 at 945.599 kb on - strand, within MPMX19_00909 at 945.605 kb on + strand, within MPMX19_00909 at 945.605 kb on + strand, within MPMX19_00909 at 945.605 kb on + strand, within MPMX19_00909 at 945.605 kb on + strand, within MPMX19_00909 at 945.605 kb on + strand, within MPMX19_00909 at 945.606 kb on - strand, within MPMX19_00909 at 945.606 kb on - strand, within MPMX19_00909 at 945.606 kb on - strand, within MPMX19_00909 at 945.606 kb on - strand, within MPMX19_00909 at 945.606 kb on - strand, within MPMX19_00909 at 945.798 kb on + strand at 945.798 kb on + strand at 945.799 kb on - strand at 945.799 kb on - strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.810 kb on + strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.811 kb on - strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.812 kb on + strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 945.813 kb on - strand at 946.109 kb on + strand, within MPMX19_00910 at 946.109 kb on + strand, within MPMX19_00910 at 946.109 kb on + strand, within MPMX19_00910 at 946.109 kb on + strand, within MPMX19_00910 at 946.109 kb on + strand, within MPMX19_00910 at 946.109 kb on + strand, within MPMX19_00910 at 946.109 kb on + strand, within MPMX19_00910 at 946.109 kb on + strand, within MPMX19_00910 at 946.110 kb on - strand, within MPMX19_00910 at 946.110 kb on - strand, within MPMX19_00910 at 946.110 kb on - strand, within MPMX19_00910 at 946.110 kb on - strand, within MPMX19_00910 at 946.124 kb on + strand, within MPMX19_00910 at 946.125 kb on - strand, within MPMX19_00910 at 946.133 kb on + strand, within MPMX19_00910 at 946.133 kb on + strand, within MPMX19_00910 at 946.134 kb on - strand, within MPMX19_00910 at 946.134 kb on - strand, within MPMX19_00910 at 946.134 kb on - strand, within MPMX19_00910 at 946.134 kb on - strand, within MPMX19_00910 at 946.413 kb on + strand, within MPMX19_00911 at 946.414 kb on - strand, within MPMX19_00911
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 944,284 + MPMX19_00908 0.72 -2.2 944,284 + MPMX19_00908 0.72 -0.4 944,284 + MPMX19_00908 0.72 -1.1 944,284 + MPMX19_00908 0.72 +1.5 944,284 + MPMX19_00908 0.72 -0.9 944,284 + MPMX19_00908 0.72 +0.0 944,284 + MPMX19_00908 0.72 -0.9 944,284 + MPMX19_00908 0.72 -1.8 944,284 + MPMX19_00908 0.72 +0.4 944,285 - MPMX19_00908 0.72 -0.8 944,285 - MPMX19_00908 0.72 -1.6 944,285 - MPMX19_00908 0.72 -0.4 944,285 - MPMX19_00908 0.72 -1.1 944,285 - MPMX19_00908 0.72 -1.3 944,285 - MPMX19_00908 0.72 +1.7 944,359 + MPMX19_00908 0.74 -0.1 944,359 + MPMX19_00908 0.74 +0.3 944,359 + MPMX19_00908 0.74 -0.6 944,360 - MPMX19_00908 0.74 -3.2 944,360 - MPMX19_00908 0.74 -0.3 944,800 + +0.9 944,800 + -0.3 944,800 + -1.9 944,800 + +0.4 944,801 - -0.1 944,801 - +0.7 944,801 - +0.3 944,926 + -0.5 944,926 + -0.4 944,926 + -0.0 944,927 - +0.4 944,927 - -0.3 944,927 - -0.7 944,927 - -0.1 944,944 + +2.1 944,945 - -0.1 944,945 - +0.7 944,986 + -1.8 944,986 + -0.2 944,986 + -2.4 944,986 + +0.4 944,987 - -0.6 944,987 - +0.0 944,987 - +0.2 944,987 - -0.1 944,987 - +0.1 944,987 - -0.3 945,091 + -0.9 945,091 + -0.4 945,091 + -1.3 945,091 + +0.6 945,092 - -0.7 945,092 - -0.0 945,092 - -0.1 945,092 - -0.3 945,092 - -0.3 945,092 - -0.5 945,092 - -1.6 945,092 - -0.4 945,092 - +0.9 945,092 - +1.4 945,101 + -0.5 945,102 - -0.4 945,102 - -0.7 945,210 + -0.3 945,210 + -0.3 945,210 + -0.5 945,210 + -0.6 945,211 - -1.1 945,211 - -1.0 945,211 - +0.3 945,211 - -0.7 945,211 - -1.5 945,211 - +0.1 945,211 - -0.5 945,211 - +0.7 945,211 - +0.5 945,211 - +0.3 945,211 - -0.6 945,211 - +0.5 945,211 - -1.1 945,211 - -1.3 945,211 - +0.1 945,211 - -0.1 945,216 - +1.6 945,216 - +1.5 945,216 - +0.4 945,216 - -1.5 945,216 - -1.5 945,216 - -0.3 945,216 - -1.5 945,216 - +0.5 945,232 + -0.4 945,446 + MPMX19_00909 0.37 -0.0 945,446 + MPMX19_00909 0.37 -0.2 945,446 + MPMX19_00909 0.37 +0.3 945,494 + MPMX19_00909 0.46 -0.3 945,494 + MPMX19_00909 0.46 -1.3 945,494 + MPMX19_00909 0.46 +0.4 945,494 + MPMX19_00909 0.46 -0.7 945,494 + MPMX19_00909 0.46 -1.5 945,494 + MPMX19_00909 0.46 -0.2 945,495 - MPMX19_00909 0.47 +0.7 945,495 - MPMX19_00909 0.47 +0.5 945,495 - MPMX19_00909 0.47 +1.1 945,495 - MPMX19_00909 0.47 -1.8 945,495 - MPMX19_00909 0.47 -0.3 945,598 + MPMX19_00909 0.66 +0.6 945,598 + MPMX19_00909 0.66 -0.2 945,599 - MPMX19_00909 0.66 +2.3 945,599 - MPMX19_00909 0.66 +0.6 945,605 + MPMX19_00909 0.67 -1.2 945,605 + MPMX19_00909 0.67 +0.1 945,605 + MPMX19_00909 0.67 +0.6 945,605 + MPMX19_00909 0.67 -0.8 945,605 + MPMX19_00909 0.67 -1.0 945,606 - MPMX19_00909 0.67 +0.8 945,606 - MPMX19_00909 0.67 -1.1 945,606 - MPMX19_00909 0.67 -0.3 945,606 - MPMX19_00909 0.67 +0.7 945,606 - MPMX19_00909 0.67 +0.8 945,798 + -0.9 945,798 + -0.6 945,799 - -0.6 945,799 - -0.6 945,810 + -0.5 945,810 + -0.5 945,810 + -1.1 945,810 + +0.5 945,810 + +0.7 945,810 + +1.3 945,810 + -0.8 945,810 + -1.1 945,810 + -0.4 945,810 + +0.1 945,810 + -1.4 945,810 + -2.1 945,811 - -0.1 945,811 - +0.4 945,811 - +1.1 945,811 - -0.1 945,811 - -1.3 945,811 - -1.3 945,811 - -0.3 945,811 - +0.1 945,811 - +0.7 945,811 - +0.5 945,811 - -0.8 945,811 - +0.0 945,811 - +0.2 945,812 + -1.5 945,812 + -1.5 945,812 + -0.2 945,812 + -0.3 945,812 + -0.4 945,812 + -0.6 945,812 + +1.3 945,812 + -0.9 945,812 + -0.6 945,812 + -0.8 945,812 + -1.8 945,812 + -1.8 945,812 + -0.9 945,812 + +0.5 945,813 - -0.6 945,813 - -0.9 945,813 - +1.4 945,813 - -0.5 945,813 - +0.1 945,813 - +0.1 945,813 - +0.1 945,813 - -0.9 945,813 - -0.8 945,813 - -0.6 945,813 - -0.3 945,813 - -1.0 945,813 - +0.8 945,813 - +0.1 945,813 - -0.3 945,813 - -0.8 945,813 - -0.1 946,109 + MPMX19_00910 0.77 +3.1 946,109 + MPMX19_00910 0.77 +0.0 946,109 + MPMX19_00910 0.77 -0.0 946,109 + MPMX19_00910 0.77 +1.7 946,109 + MPMX19_00910 0.77 -0.8 946,109 + MPMX19_00910 0.77 -0.1 946,109 + MPMX19_00910 0.77 +0.2 946,109 + MPMX19_00910 0.77 -0.8 946,110 - MPMX19_00910 0.78 -0.1 946,110 - MPMX19_00910 0.78 +0.7 946,110 - MPMX19_00910 0.78 +0.3 946,110 - MPMX19_00910 0.78 +1.3 946,124 + MPMX19_00910 0.81 -0.9 946,125 - MPMX19_00910 0.82 -0.9 946,133 + MPMX19_00910 0.84 -2.3 946,133 + MPMX19_00910 0.84 -0.4 946,134 - MPMX19_00910 0.84 +0.0 946,134 - MPMX19_00910 0.84 +1.0 946,134 - MPMX19_00910 0.84 -1.1 946,134 - MPMX19_00910 0.84 +0.3 946,413 + MPMX19_00911 0.17 +0.4 946,414 - MPMX19_00911 0.17 +0.5
Or see this region's nucleotide sequence