Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00892 and MPMX19_00893 are separated by 413 nucleotides MPMX19_00893 and MPMX19_00894 are separated by 41 nucleotides
MPMX19_00892: MPMX19_00892 - Thermostable carboxypeptidase 1, at 925,358 to 926,845
_00892
MPMX19_00893: MPMX19_00893 - Anthranilate synthase component 1, at 927,259 to 928,770
_00893
MPMX19_00894: MPMX19_00894 - Peptidyl-prolyl cis-trans isomerase D, at 928,812 to 930,692
_00894
Position (kb) 927
928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 926.366 kb on + strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.366 kb on + strand, within MPMX19_00892 at 926.367 kb on - strand, within MPMX19_00892 at 926.367 kb on - strand, within MPMX19_00892 at 926.367 kb on - strand, within MPMX19_00892 at 926.417 kb on + strand, within MPMX19_00892 at 926.417 kb on + strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.418 kb on - strand, within MPMX19_00892 at 926.441 kb on + strand, within MPMX19_00892 at 926.597 kb on + strand, within MPMX19_00892 at 926.597 kb on + strand, within MPMX19_00892 at 926.597 kb on + strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.598 kb on - strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.609 kb on + strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.610 kb on - strand, within MPMX19_00892 at 926.837 kb on + strand at 926.838 kb on - strand at 926.838 kb on - strand at 926.838 kb on - strand at 926.838 kb on - strand at 926.900 kb on + strand at 926.900 kb on + strand at 926.900 kb on + strand at 926.900 kb on + strand at 926.900 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.092 kb on + strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.093 kb on - strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.095 kb on + strand at 927.096 kb on - strand at 927.097 kb on + strand at 927.097 kb on + strand at 927.097 kb on + strand at 927.098 kb on - strand at 927.098 kb on - strand at 927.127 kb on + strand at 927.335 kb on + strand at 927.335 kb on + strand at 927.335 kb on + strand at 927.336 kb on - strand at 927.336 kb on - strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.386 kb on + strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.387 kb on - strand at 927.458 kb on + strand, within MPMX19_00893 at 927.458 kb on + strand, within MPMX19_00893 at 927.458 kb on + strand, within MPMX19_00893 at 927.459 kb on - strand, within MPMX19_00893 at 927.459 kb on - strand, within MPMX19_00893 at 927.476 kb on + strand, within MPMX19_00893 at 927.476 kb on + strand, within MPMX19_00893 at 927.476 kb on + strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.477 kb on - strand, within MPMX19_00893 at 927.644 kb on + strand, within MPMX19_00893 at 927.644 kb on + strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.645 kb on - strand, within MPMX19_00893 at 927.829 kb on - strand, within MPMX19_00893 at 927.829 kb on - strand, within MPMX19_00893 at 927.957 kb on - strand, within MPMX19_00893 at 927.957 kb on - strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.037 kb on + strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.038 kb on - strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.067 kb on + strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.068 kb on - strand, within MPMX19_00893 at 928.196 kb on + strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.197 kb on - strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.370 kb on + strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.371 kb on - strand, within MPMX19_00893 at 928.379 kb on + strand, within MPMX19_00893 at 928.379 kb on + strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.380 kb on - strand, within MPMX19_00893 at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on + strand at 928.661 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.662 kb on - strand at 928.730 kb on + strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.731 kb on - strand at 928.752 kb on + strand at 928.864 kb on + strand at 928.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 926,366 + MPMX19_00892 0.68 +0.1 926,366 + MPMX19_00892 0.68 -1.5 926,366 + MPMX19_00892 0.68 -0.3 926,366 + MPMX19_00892 0.68 -0.3 926,367 - MPMX19_00892 0.68 -0.5 926,367 - MPMX19_00892 0.68 +0.1 926,367 - MPMX19_00892 0.68 -1.4 926,417 + MPMX19_00892 0.71 -1.0 926,417 + MPMX19_00892 0.71 -1.5 926,418 - MPMX19_00892 0.71 -1.1 926,418 - MPMX19_00892 0.71 +0.1 926,418 - MPMX19_00892 0.71 -0.9 926,418 - MPMX19_00892 0.71 -0.1 926,418 - MPMX19_00892 0.71 -0.2 926,418 - MPMX19_00892 0.71 -0.0 926,441 + MPMX19_00892 0.73 -0.2 926,597 + MPMX19_00892 0.83 -1.4 926,597 + MPMX19_00892 0.83 +0.3 926,597 + MPMX19_00892 0.83 +0.8 926,598 - MPMX19_00892 0.83 -0.8 926,598 - MPMX19_00892 0.83 -1.0 926,598 - MPMX19_00892 0.83 +0.3 926,598 - MPMX19_00892 0.83 +0.7 926,598 - MPMX19_00892 0.83 -0.5 926,609 + MPMX19_00892 0.84 -0.8 926,609 + MPMX19_00892 0.84 -0.3 926,609 + MPMX19_00892 0.84 -0.1 926,609 + MPMX19_00892 0.84 -2.5 926,609 + MPMX19_00892 0.84 -0.3 926,610 - MPMX19_00892 0.84 -1.7 926,610 - MPMX19_00892 0.84 +0.2 926,610 - MPMX19_00892 0.84 -0.7 926,610 - MPMX19_00892 0.84 -0.1 926,610 - MPMX19_00892 0.84 -0.4 926,610 - MPMX19_00892 0.84 +0.7 926,610 - MPMX19_00892 0.84 -0.9 926,610 - MPMX19_00892 0.84 -0.2 926,837 + +0.3 926,838 - -1.5 926,838 - -0.1 926,838 - -0.2 926,838 - -0.9 926,900 + -1.0 926,900 + -1.1 926,900 + +0.0 926,900 + -0.1 926,900 + -2.0 927,092 + -0.0 927,092 + -0.3 927,092 + -1.5 927,092 + -1.2 927,092 + -1.5 927,092 + -0.5 927,093 - -0.1 927,093 - +0.6 927,093 - -0.7 927,093 - -1.3 927,093 - -0.5 927,093 - +0.8 927,093 - -0.8 927,093 - -1.5 927,093 - -1.3 927,093 - -0.9 927,093 - -0.9 927,095 + -0.1 927,095 + +0.1 927,095 + -0.2 927,095 + -1.3 927,095 + +0.2 927,095 + -1.7 927,096 - -1.1 927,097 + +0.6 927,097 + +0.3 927,097 + +0.3 927,098 - -0.5 927,098 - -0.8 927,127 + -0.7 927,335 + -0.4 927,335 + -0.1 927,335 + -0.6 927,336 - -0.2 927,336 - +0.3 927,386 + -2.1 927,386 + -0.4 927,386 + -0.4 927,386 + -0.1 927,386 + -0.2 927,386 + -1.3 927,386 + -0.5 927,386 + -0.0 927,386 + -0.3 927,386 + -1.3 927,386 + -0.3 927,386 + +0.1 927,386 + -0.4 927,386 + -1.1 927,386 + -1.0 927,386 + +1.5 927,386 + +1.0 927,386 + -2.3 927,386 + -0.6 927,386 + -0.9 927,386 + +0.7 927,386 + +1.3 927,386 + -1.1 927,386 + -2.0 927,386 + -1.5 927,386 + -0.3 927,387 - -1.8 927,387 - -0.9 927,387 - -0.4 927,387 - +0.2 927,387 - -1.9 927,387 - -1.5 927,387 - -0.7 927,387 - -0.3 927,387 - +0.8 927,387 - -1.8 927,387 - -1.5 927,387 - -1.3 927,387 - -1.1 927,387 - -1.0 927,387 - -0.6 927,387 - -0.1 927,387 - +0.9 927,387 - +1.1 927,387 - +0.8 927,387 - -0.9 927,387 - -0.4 927,387 - -0.0 927,387 - -0.6 927,387 - -0.9 927,387 - -0.3 927,387 - -1.1 927,387 - -1.1 927,387 - +0.1 927,387 - +0.4 927,387 - -2.0 927,387 - -0.9 927,458 + MPMX19_00893 0.13 -2.2 927,458 + MPMX19_00893 0.13 -0.0 927,458 + MPMX19_00893 0.13 -0.6 927,459 - MPMX19_00893 0.13 +0.6 927,459 - MPMX19_00893 0.13 -2.9 927,476 + MPMX19_00893 0.14 -0.3 927,476 + MPMX19_00893 0.14 -2.5 927,476 + MPMX19_00893 0.14 +0.1 927,477 - MPMX19_00893 0.14 +0.4 927,477 - MPMX19_00893 0.14 -1.2 927,477 - MPMX19_00893 0.14 -1.0 927,477 - MPMX19_00893 0.14 -1.6 927,644 + MPMX19_00893 0.25 +1.0 927,644 + MPMX19_00893 0.25 +0.7 927,645 - MPMX19_00893 0.26 -1.0 927,645 - MPMX19_00893 0.26 -0.1 927,645 - MPMX19_00893 0.26 -1.0 927,645 - MPMX19_00893 0.26 -0.9 927,645 - MPMX19_00893 0.26 +0.1 927,829 - MPMX19_00893 0.38 -0.4 927,829 - MPMX19_00893 0.38 +0.2 927,957 - MPMX19_00893 0.46 -0.5 927,957 - MPMX19_00893 0.46 -0.7 928,037 + MPMX19_00893 0.51 -1.3 928,037 + MPMX19_00893 0.51 -2.1 928,037 + MPMX19_00893 0.51 +0.4 928,037 + MPMX19_00893 0.51 -1.3 928,037 + MPMX19_00893 0.51 -0.6 928,037 + MPMX19_00893 0.51 -1.2 928,037 + MPMX19_00893 0.51 +0.6 928,037 + MPMX19_00893 0.51 -0.7 928,037 + MPMX19_00893 0.51 +0.2 928,037 + MPMX19_00893 0.51 +0.1 928,037 + MPMX19_00893 0.51 -1.3 928,037 + MPMX19_00893 0.51 -0.3 928,037 + MPMX19_00893 0.51 -1.8 928,037 + MPMX19_00893 0.51 -0.6 928,037 + MPMX19_00893 0.51 -0.0 928,038 - MPMX19_00893 0.52 +0.3 928,038 - MPMX19_00893 0.52 +0.3 928,038 - MPMX19_00893 0.52 -1.5 928,038 - MPMX19_00893 0.52 -0.4 928,038 - MPMX19_00893 0.52 -0.6 928,038 - MPMX19_00893 0.52 -1.0 928,038 - MPMX19_00893 0.52 -1.3 928,038 - MPMX19_00893 0.52 +0.1 928,038 - MPMX19_00893 0.52 -0.4 928,038 - MPMX19_00893 0.52 -0.8 928,038 - MPMX19_00893 0.52 +0.7 928,038 - MPMX19_00893 0.52 -2.2 928,038 - MPMX19_00893 0.52 -0.8 928,067 + MPMX19_00893 0.53 -0.3 928,067 + MPMX19_00893 0.53 -2.1 928,067 + MPMX19_00893 0.53 -0.1 928,067 + MPMX19_00893 0.53 -1.5 928,068 - MPMX19_00893 0.54 +0.4 928,068 - MPMX19_00893 0.54 -0.3 928,068 - MPMX19_00893 0.54 -0.3 928,068 - MPMX19_00893 0.54 -0.5 928,068 - MPMX19_00893 0.54 +0.2 928,068 - MPMX19_00893 0.54 -0.4 928,196 + MPMX19_00893 0.62 -1.2 928,197 - MPMX19_00893 0.62 -1.1 928,197 - MPMX19_00893 0.62 -1.2 928,197 - MPMX19_00893 0.62 -2.0 928,370 + MPMX19_00893 0.73 -0.1 928,370 + MPMX19_00893 0.73 -0.4 928,370 + MPMX19_00893 0.73 -0.6 928,370 + MPMX19_00893 0.73 +0.3 928,370 + MPMX19_00893 0.73 -0.2 928,370 + MPMX19_00893 0.73 +0.5 928,370 + MPMX19_00893 0.73 -1.0 928,370 + MPMX19_00893 0.73 +0.4 928,370 + MPMX19_00893 0.73 -0.2 928,370 + MPMX19_00893 0.73 -0.8 928,370 + MPMX19_00893 0.73 -0.4 928,370 + MPMX19_00893 0.73 -1.3 928,371 - MPMX19_00893 0.74 +0.1 928,371 - MPMX19_00893 0.74 -1.9 928,371 - MPMX19_00893 0.74 +0.1 928,371 - MPMX19_00893 0.74 -2.9 928,371 - MPMX19_00893 0.74 -1.2 928,371 - MPMX19_00893 0.74 -0.5 928,371 - MPMX19_00893 0.74 -0.4 928,371 - MPMX19_00893 0.74 -1.3 928,371 - MPMX19_00893 0.74 -0.3 928,379 + MPMX19_00893 0.74 -3.1 928,379 + MPMX19_00893 0.74 -0.6 928,380 - MPMX19_00893 0.74 -0.5 928,380 - MPMX19_00893 0.74 +1.1 928,380 - MPMX19_00893 0.74 -1.4 928,380 - MPMX19_00893 0.74 -0.4 928,380 - MPMX19_00893 0.74 +1.2 928,380 - MPMX19_00893 0.74 -1.2 928,661 + +0.4 928,661 + +0.1 928,661 + +0.9 928,661 + +0.9 928,661 + -0.0 928,661 + -1.3 928,661 + -0.3 928,661 + -0.1 928,661 + -2.9 928,661 - +0.4 928,662 - -0.4 928,662 - -0.5 928,662 - -1.9 928,662 - -0.5 928,662 - -0.2 928,662 - -0.9 928,662 - +0.4 928,662 - -0.1 928,730 + +0.5 928,731 - -0.6 928,731 - +1.1 928,731 - -1.5 928,731 - -1.5 928,752 + -0.9 928,864 + -1.3 928,865 - -1.3
Or see this region's nucleotide sequence