Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00823 and MPMX19_00824 overlap by 4 nucleotides MPMX19_00824 and MPMX19_00825 are separated by 158 nucleotides MPMX19_00825 and MPMX19_00826 are separated by 3 nucleotides
MPMX19_00823: MPMX19_00823 - hypothetical protein, at 850,740 to 852,953
_00823
MPMX19_00824: MPMX19_00824 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 852,950 to 853,759
_00824
MPMX19_00825: MPMX19_00825 - hypothetical protein, at 853,918 to 855,000
_00825
MPMX19_00826: MPMX19_00826 - Multidrug resistance protein MdtB, at 855,004 to 858,144
_00826
Position (kb) 853
854
855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 852.941 kb on + strand at 852.941 kb on + strand at 852.941 kb on + strand at 852.941 kb on + strand at 852.941 kb on + strand at 852.941 kb on + strand at 852.941 kb on + strand at 852.942 kb on - strand at 852.942 kb on - strand at 852.942 kb on - strand at 852.942 kb on - strand at 852.942 kb on - strand at 852.942 kb on - strand at 852.942 kb on - strand at 852.942 kb on - strand at 852.942 kb on - strand at 852.942 kb on - strand at 852.942 kb on - strand at 853.278 kb on + strand, within MPMX19_00824 at 853.278 kb on + strand, within MPMX19_00824 at 853.278 kb on + strand, within MPMX19_00824 at 853.279 kb on - strand, within MPMX19_00824 at 853.279 kb on - strand, within MPMX19_00824 at 853.279 kb on - strand, within MPMX19_00824 at 853.279 kb on - strand, within MPMX19_00824 at 853.279 kb on - strand, within MPMX19_00824 at 853.279 kb on - strand, within MPMX19_00824 at 853.357 kb on + strand, within MPMX19_00824 at 853.357 kb on + strand, within MPMX19_00824 at 853.357 kb on + strand, within MPMX19_00824 at 853.357 kb on + strand, within MPMX19_00824 at 853.357 kb on + strand, within MPMX19_00824 at 853.357 kb on + strand, within MPMX19_00824 at 853.357 kb on + strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.358 kb on - strand, within MPMX19_00824 at 853.524 kb on + strand, within MPMX19_00824 at 853.524 kb on + strand, within MPMX19_00824 at 853.524 kb on + strand, within MPMX19_00824 at 853.524 kb on + strand, within MPMX19_00824 at 853.524 kb on + strand, within MPMX19_00824 at 853.524 kb on + strand, within MPMX19_00824 at 853.524 kb on + strand, within MPMX19_00824 at 853.524 kb on + strand, within MPMX19_00824 at 853.524 kb on + strand, within MPMX19_00824 at 853.525 kb on - strand, within MPMX19_00824 at 853.525 kb on - strand, within MPMX19_00824 at 853.525 kb on - strand, within MPMX19_00824 at 853.525 kb on - strand, within MPMX19_00824 at 853.525 kb on - strand, within MPMX19_00824 at 853.525 kb on - strand, within MPMX19_00824 at 853.789 kb on + strand at 853.789 kb on + strand at 853.789 kb on + strand at 853.789 kb on + strand at 853.790 kb on - strand at 853.790 kb on - strand at 853.790 kb on - strand at 853.790 kb on - strand at 853.790 kb on - strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.793 kb on + strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.794 kb on - strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.847 kb on + strand at 853.848 kb on - strand at 853.848 kb on - strand at 853.848 kb on - strand at 853.848 kb on - strand at 853.848 kb on - strand at 853.848 kb on - strand at 853.848 kb on - strand at 853.895 kb on - strand at 853.895 kb on - strand at 853.895 kb on - strand at 854.231 kb on + strand, within MPMX19_00825 at 854.231 kb on + strand, within MPMX19_00825 at 854.231 kb on + strand, within MPMX19_00825 at 854.231 kb on + strand, within MPMX19_00825 at 854.231 kb on + strand, within MPMX19_00825 at 854.231 kb on + strand, within MPMX19_00825 at 854.231 kb on + strand, within MPMX19_00825 at 854.232 kb on - strand, within MPMX19_00825 at 854.602 kb on + strand, within MPMX19_00825 at 854.602 kb on + strand, within MPMX19_00825 at 854.603 kb on - strand, within MPMX19_00825 at 854.617 kb on + strand, within MPMX19_00825 at 854.617 kb on + strand, within MPMX19_00825 at 854.618 kb on - strand, within MPMX19_00825 at 854.618 kb on - strand, within MPMX19_00825 at 854.863 kb on + strand, within MPMX19_00825 at 854.863 kb on + strand, within MPMX19_00825 at 854.863 kb on + strand, within MPMX19_00825 at 854.863 kb on + strand, within MPMX19_00825 at 854.863 kb on + strand, within MPMX19_00825 at 854.863 kb on + strand, within MPMX19_00825 at 854.864 kb on - strand, within MPMX19_00825 at 854.864 kb on - strand, within MPMX19_00825 at 854.864 kb on - strand, within MPMX19_00825 at 854.870 kb on - strand, within MPMX19_00825 at 855.098 kb on + strand at 855.098 kb on + strand at 855.099 kb on - strand at 855.099 kb on - strand at 855.524 kb on + strand, within MPMX19_00826 at 855.524 kb on + strand, within MPMX19_00826 at 855.524 kb on + strand, within MPMX19_00826 at 855.524 kb on + strand, within MPMX19_00826 at 855.524 kb on + strand, within MPMX19_00826 at 855.524 kb on + strand, within MPMX19_00826 at 855.524 kb on + strand, within MPMX19_00826 at 855.524 kb on + strand, within MPMX19_00826 at 855.524 kb on + strand, within MPMX19_00826 at 855.525 kb on - strand, within MPMX19_00826 at 855.525 kb on - strand, within MPMX19_00826 at 855.525 kb on - strand, within MPMX19_00826 at 855.525 kb on - strand, within MPMX19_00826 at 855.525 kb on - strand, within MPMX19_00826 at 855.525 kb on - strand, within MPMX19_00826 at 855.525 kb on - strand, within MPMX19_00826 at 855.525 kb on - strand, within MPMX19_00826 at 855.525 kb on - strand, within MPMX19_00826 at 855.563 kb on + strand, within MPMX19_00826 at 855.563 kb on + strand, within MPMX19_00826 at 855.563 kb on + strand, within MPMX19_00826 at 855.563 kb on + strand, within MPMX19_00826 at 855.563 kb on + strand, within MPMX19_00826 at 855.563 kb on + strand, within MPMX19_00826 at 855.564 kb on - strand, within MPMX19_00826 at 855.564 kb on - strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.890 kb on + strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826 at 855.891 kb on - strand, within MPMX19_00826
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 852,941 + +0.2 852,941 + +0.0 852,941 + +0.1 852,941 + +2.2 852,941 + -0.1 852,941 + -0.7 852,941 + -0.4 852,942 - +0.9 852,942 - -0.1 852,942 - +1.5 852,942 - -1.6 852,942 - -0.3 852,942 - -0.3 852,942 - -1.2 852,942 - +0.1 852,942 - -0.9 852,942 - -0.4 852,942 - +0.9 853,278 + MPMX19_00824 0.40 -0.4 853,278 + MPMX19_00824 0.40 -2.2 853,278 + MPMX19_00824 0.40 +0.9 853,279 - MPMX19_00824 0.41 +1.0 853,279 - MPMX19_00824 0.41 -0.0 853,279 - MPMX19_00824 0.41 -1.3 853,279 - MPMX19_00824 0.41 +1.4 853,279 - MPMX19_00824 0.41 -0.3 853,279 - MPMX19_00824 0.41 -0.9 853,357 + MPMX19_00824 0.50 +0.1 853,357 + MPMX19_00824 0.50 +1.1 853,357 + MPMX19_00824 0.50 -0.7 853,357 + MPMX19_00824 0.50 -0.2 853,357 + MPMX19_00824 0.50 +0.7 853,357 + MPMX19_00824 0.50 -0.5 853,357 + MPMX19_00824 0.50 +0.5 853,358 - MPMX19_00824 0.50 -0.1 853,358 - MPMX19_00824 0.50 -0.6 853,358 - MPMX19_00824 0.50 -0.2 853,358 - MPMX19_00824 0.50 -0.6 853,358 - MPMX19_00824 0.50 -0.2 853,358 - MPMX19_00824 0.50 -2.0 853,358 - MPMX19_00824 0.50 -0.9 853,358 - MPMX19_00824 0.50 +0.3 853,358 - MPMX19_00824 0.50 +0.3 853,358 - MPMX19_00824 0.50 -1.7 853,524 + MPMX19_00824 0.71 -0.7 853,524 + MPMX19_00824 0.71 -0.0 853,524 + MPMX19_00824 0.71 -1.0 853,524 + MPMX19_00824 0.71 -1.2 853,524 + MPMX19_00824 0.71 -1.5 853,524 + MPMX19_00824 0.71 -0.2 853,524 + MPMX19_00824 0.71 -0.3 853,524 + MPMX19_00824 0.71 +0.4 853,524 + MPMX19_00824 0.71 -0.5 853,525 - MPMX19_00824 0.71 -3.1 853,525 - MPMX19_00824 0.71 +0.1 853,525 - MPMX19_00824 0.71 +1.2 853,525 - MPMX19_00824 0.71 +0.2 853,525 - MPMX19_00824 0.71 -0.1 853,525 - MPMX19_00824 0.71 -0.7 853,789 + +0.5 853,789 + +0.7 853,789 + -2.0 853,789 + +0.4 853,790 - +1.5 853,790 - +0.5 853,790 - -2.0 853,790 - +1.3 853,790 - -0.5 853,793 + -0.0 853,793 + -1.5 853,793 + -1.5 853,793 + -0.6 853,793 + -1.0 853,793 + -1.2 853,793 + +0.3 853,793 + -2.0 853,793 + -0.5 853,793 + -0.1 853,793 + +1.0 853,793 + +0.4 853,793 + -0.5 853,793 + +1.2 853,793 + +0.9 853,793 + -1.7 853,793 + +0.7 853,793 + -2.2 853,793 + +1.0 853,793 + -0.1 853,793 + +0.3 853,793 + +0.8 853,793 + -0.3 853,793 + -0.9 853,793 + -0.5 853,794 - +0.2 853,794 - -1.3 853,794 - +1.2 853,794 - +0.9 853,794 - +0.3 853,794 - -1.6 853,794 - -1.1 853,794 - +0.4 853,794 - -0.1 853,794 - -0.6 853,794 - +0.2 853,794 - +0.4 853,794 - +0.4 853,794 - -2.6 853,794 - -0.1 853,794 - -0.2 853,794 - -0.6 853,794 - +1.4 853,794 - -0.1 853,794 - -0.3 853,794 - +0.5 853,794 - -0.5 853,794 - -0.3 853,794 - -0.2 853,794 - -1.3 853,794 - -0.3 853,794 - -0.8 853,794 - -0.3 853,794 - -0.3 853,847 + -0.6 853,847 + -0.9 853,847 + -1.3 853,847 + +0.3 853,847 + -0.3 853,847 + -2.6 853,847 + -0.5 853,847 + +0.1 853,847 + +0.9 853,847 + -1.6 853,847 + -0.7 853,848 - +0.7 853,848 - -0.3 853,848 - -0.3 853,848 - -1.1 853,848 - -1.1 853,848 - -0.5 853,848 - +1.4 853,895 - -0.2 853,895 - -0.5 853,895 - +0.5 854,231 + MPMX19_00825 0.29 -0.9 854,231 + MPMX19_00825 0.29 +0.4 854,231 + MPMX19_00825 0.29 -0.9 854,231 + MPMX19_00825 0.29 +0.7 854,231 + MPMX19_00825 0.29 +0.9 854,231 + MPMX19_00825 0.29 +0.5 854,231 + MPMX19_00825 0.29 -0.4 854,232 - MPMX19_00825 0.29 -0.5 854,602 + MPMX19_00825 0.63 +0.2 854,602 + MPMX19_00825 0.63 +0.1 854,603 - MPMX19_00825 0.63 -1.1 854,617 + MPMX19_00825 0.65 +0.5 854,617 + MPMX19_00825 0.65 -0.8 854,618 - MPMX19_00825 0.65 +1.2 854,618 - MPMX19_00825 0.65 +0.0 854,863 + MPMX19_00825 0.87 +1.1 854,863 + MPMX19_00825 0.87 -1.5 854,863 + MPMX19_00825 0.87 -0.0 854,863 + MPMX19_00825 0.87 -0.6 854,863 + MPMX19_00825 0.87 -0.7 854,863 + MPMX19_00825 0.87 -1.5 854,864 - MPMX19_00825 0.87 -1.5 854,864 - MPMX19_00825 0.87 +0.5 854,864 - MPMX19_00825 0.87 -0.2 854,870 - MPMX19_00825 0.88 +1.7 855,098 + -0.5 855,098 + -0.9 855,099 - -1.5 855,099 - -0.7 855,524 + MPMX19_00826 0.17 -0.3 855,524 + MPMX19_00826 0.17 -1.0 855,524 + MPMX19_00826 0.17 -0.1 855,524 + MPMX19_00826 0.17 -0.6 855,524 + MPMX19_00826 0.17 -0.3 855,524 + MPMX19_00826 0.17 -2.5 855,524 + MPMX19_00826 0.17 -0.5 855,524 + MPMX19_00826 0.17 -0.7 855,524 + MPMX19_00826 0.17 -0.3 855,525 - MPMX19_00826 0.17 -0.1 855,525 - MPMX19_00826 0.17 -0.5 855,525 - MPMX19_00826 0.17 +0.1 855,525 - MPMX19_00826 0.17 -1.1 855,525 - MPMX19_00826 0.17 +0.2 855,525 - MPMX19_00826 0.17 -0.9 855,525 - MPMX19_00826 0.17 -0.6 855,525 - MPMX19_00826 0.17 -1.0 855,525 - MPMX19_00826 0.17 +1.1 855,563 + MPMX19_00826 0.18 +0.0 855,563 + MPMX19_00826 0.18 +0.4 855,563 + MPMX19_00826 0.18 -0.4 855,563 + MPMX19_00826 0.18 -1.9 855,563 + MPMX19_00826 0.18 -0.6 855,563 + MPMX19_00826 0.18 -0.3 855,564 - MPMX19_00826 0.18 +0.4 855,564 - MPMX19_00826 0.18 +0.2 855,890 + MPMX19_00826 0.28 -0.3 855,890 + MPMX19_00826 0.28 -0.9 855,890 + MPMX19_00826 0.28 -0.5 855,890 + MPMX19_00826 0.28 -1.0 855,890 + MPMX19_00826 0.28 +0.2 855,890 + MPMX19_00826 0.28 -0.5 855,890 + MPMX19_00826 0.28 -0.8 855,890 + MPMX19_00826 0.28 +0.5 855,890 + MPMX19_00826 0.28 +1.5 855,890 + MPMX19_00826 0.28 -0.7 855,890 + MPMX19_00826 0.28 -1.7 855,890 + MPMX19_00826 0.28 -1.3 855,891 - MPMX19_00826 0.28 -1.6 855,891 - MPMX19_00826 0.28 +1.1 855,891 - MPMX19_00826 0.28 +0.1 855,891 - MPMX19_00826 0.28 -1.0 855,891 - MPMX19_00826 0.28 -0.1 855,891 - MPMX19_00826 0.28 +0.1 855,891 - MPMX19_00826 0.28 +0.2 855,891 - MPMX19_00826 0.28 -0.1 855,891 - MPMX19_00826 0.28 -1.6 855,891 - MPMX19_00826 0.28 -0.5 855,891 - MPMX19_00826 0.28 -0.5 855,891 - MPMX19_00826 0.28 -0.9
Or see this region's nucleotide sequence