Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00793 and MPMX19_00794 are separated by 84 nucleotides MPMX19_00794 and MPMX19_00795 are separated by 25 nucleotides MPMX19_00795 and MPMX19_00796 are separated by 240 nucleotides
MPMX19_00793: MPMX19_00793 - hypothetical protein, at 812,750 to 814,354
_00793
MPMX19_00794: MPMX19_00794 - Transcriptional activator protein CopR, at 814,439 to 815,125
_00794
MPMX19_00795: MPMX19_00795 - Adaptive-response sensory-kinase SasA, at 815,151 to 816,584
_00795
MPMX19_00796: MPMX19_00796 - hypothetical protein, at 816,825 to 817,913
_00796
Position (kb) 815
816
817 Strain fitness (log2 ratio) -2
-1
0
1 at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.433 kb on - strand at 814.433 kb on - strand at 814.433 kb on - strand at 814.433 kb on - strand at 814.461 kb on + strand at 814.461 kb on + strand at 814.461 kb on + strand at 814.462 kb on - strand at 814.462 kb on - strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.488 kb on - strand at 814.488 kb on - strand at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.578 kb on - strand, within MPMX19_00794 at 814.578 kb on - strand, within MPMX19_00794 at 814.578 kb on - strand, within MPMX19_00794 at 814.736 kb on + strand, within MPMX19_00794 at 814.736 kb on + strand, within MPMX19_00794 at 814.925 kb on + strand, within MPMX19_00794 at 814.925 kb on + strand, within MPMX19_00794 at 814.925 kb on + strand, within MPMX19_00794 at 814.988 kb on + strand, within MPMX19_00794 at 814.988 kb on + strand, within MPMX19_00794 at 815.123 kb on + strand at 815.123 kb on + strand at 815.123 kb on + strand at 815.123 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.247 kb on + strand at 815.247 kb on + strand at 815.247 kb on + strand at 815.248 kb on - strand at 815.248 kb on - strand at 815.248 kb on - strand at 815.295 kb on + strand, within MPMX19_00795 at 815.373 kb on + strand, within MPMX19_00795 at 815.382 kb on + strand, within MPMX19_00795 at 815.382 kb on + strand, within MPMX19_00795 at 815.382 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.553 kb on + strand, within MPMX19_00795 at 815.554 kb on - strand, within MPMX19_00795 at 816.172 kb on - strand, within MPMX19_00795 at 816.297 kb on + strand, within MPMX19_00795 at 816.297 kb on + strand, within MPMX19_00795 at 816.297 kb on + strand, within MPMX19_00795 at 816.297 kb on + strand, within MPMX19_00795 at 816.298 kb on - strand, within MPMX19_00795 at 816.298 kb on - strand, within MPMX19_00795 at 816.298 kb on - strand, within MPMX19_00795 at 816.298 kb on - strand, within MPMX19_00795 at 816.634 kb on + strand at 816.634 kb on + strand at 816.634 kb on + strand at 816.635 kb on - strand at 816.635 kb on - strand at 816.635 kb on - strand at 816.635 kb on - strand at 816.677 kb on + strand at 816.677 kb on + strand at 816.678 kb on - strand at 816.678 kb on - strand at 816.678 kb on - strand at 816.718 kb on + strand at 816.719 kb on - strand at 816.719 kb on - strand at 816.732 kb on + strand at 816.732 kb on + strand at 816.733 kb on - strand at 816.733 kb on - strand at 816.852 kb on + strand at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.059 kb on + strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.060 kb on - strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.308 kb on + strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.309 kb on - strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.350 kb on + strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.351 kb on - strand, within MPMX19_00796 at 817.374 kb on + strand, within MPMX19_00796 at 817.374 kb on + strand, within MPMX19_00796 at 817.374 kb on + strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796 at 817.375 kb on - strand, within MPMX19_00796
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 814,432 + +0.4 814,432 + -0.6 814,432 + +0.3 814,432 + -0.8 814,432 + -0.1 814,432 + -0.7 814,432 + -0.1 814,432 + -2.5 814,432 + +0.2 814,432 + +0.1 814,432 + -1.6 814,432 + -0.0 814,432 + -1.1 814,432 + -0.4 814,432 + -0.3 814,432 + +0.7 814,432 + +0.5 814,432 + -0.3 814,433 - -0.3 814,433 - -0.1 814,433 - -0.5 814,433 - -0.6 814,461 + -0.4 814,461 + +0.3 814,461 + -0.1 814,462 - -0.0 814,462 - -0.6 814,487 + +0.7 814,487 + -0.9 814,487 + -1.4 814,487 + -0.4 814,487 + -0.3 814,488 - -1.6 814,488 - -1.4 814,577 + MPMX19_00794 0.20 -0.8 814,577 + MPMX19_00794 0.20 -0.0 814,577 + MPMX19_00794 0.20 +0.4 814,577 + MPMX19_00794 0.20 +0.5 814,577 + MPMX19_00794 0.20 -1.7 814,577 + MPMX19_00794 0.20 -1.1 814,578 - MPMX19_00794 0.20 -0.3 814,578 - MPMX19_00794 0.20 -1.1 814,578 - MPMX19_00794 0.20 -0.7 814,736 + MPMX19_00794 0.43 +1.7 814,736 + MPMX19_00794 0.43 +0.4 814,925 + MPMX19_00794 0.71 +0.1 814,925 + MPMX19_00794 0.71 -2.4 814,925 + MPMX19_00794 0.71 -1.6 814,988 + MPMX19_00794 0.80 +0.9 814,988 + MPMX19_00794 0.80 +0.3 815,123 + -0.7 815,123 + -0.3 815,123 + -0.1 815,123 + +0.3 815,150 + +0.5 815,150 + -0.8 815,150 + -2.3 815,150 + +0.9 815,150 + -0.4 815,150 + -0.9 815,150 + +1.2 815,150 + +0.0 815,150 + +0.3 815,150 + +0.4 815,150 + -1.7 815,150 + +0.1 815,150 + +0.7 815,150 + -0.9 815,150 + +0.6 815,150 + -0.6 815,150 + +0.5 815,150 + -0.7 815,150 + -0.4 815,150 + -0.2 815,150 + +0.3 815,150 + -0.2 815,150 + -2.2 815,151 - +1.1 815,151 - -0.7 815,151 - -0.1 815,151 - +0.0 815,151 - +0.1 815,151 - -2.4 815,151 - -0.2 815,151 - -1.3 815,151 - -0.1 815,247 + -0.9 815,247 + -0.7 815,247 + -2.0 815,248 - -0.3 815,248 - -0.3 815,248 - -0.1 815,295 + MPMX19_00795 0.10 -2.7 815,373 + MPMX19_00795 0.15 -2.3 815,382 + MPMX19_00795 0.16 +0.1 815,382 + MPMX19_00795 0.16 -1.3 815,382 + MPMX19_00795 0.16 -1.3 815,448 + MPMX19_00795 0.21 +0.9 815,448 + MPMX19_00795 0.21 +0.1 815,448 + MPMX19_00795 0.21 -0.4 815,448 + MPMX19_00795 0.21 -0.6 815,449 - MPMX19_00795 0.21 -0.9 815,449 - MPMX19_00795 0.21 -1.6 815,449 - MPMX19_00795 0.21 -1.3 815,449 - MPMX19_00795 0.21 +0.3 815,449 - MPMX19_00795 0.21 -0.3 815,449 - MPMX19_00795 0.21 -0.9 815,553 + MPMX19_00795 0.28 +0.1 815,554 - MPMX19_00795 0.28 +0.0 816,172 - MPMX19_00795 0.71 -2.1 816,297 + MPMX19_00795 0.80 +0.0 816,297 + MPMX19_00795 0.80 -1.2 816,297 + MPMX19_00795 0.80 -1.5 816,297 + MPMX19_00795 0.80 -1.5 816,298 - MPMX19_00795 0.80 -0.8 816,298 - MPMX19_00795 0.80 -0.5 816,298 - MPMX19_00795 0.80 -1.1 816,298 - MPMX19_00795 0.80 -0.9 816,634 + +0.7 816,634 + -2.2 816,634 + -2.4 816,635 - +1.6 816,635 - -0.5 816,635 - +0.4 816,635 - +0.1 816,677 + -0.4 816,677 + -0.0 816,678 - -1.4 816,678 - -0.4 816,678 - -0.0 816,718 + -0.3 816,719 - +0.1 816,719 - -0.7 816,732 + -1.3 816,732 + +0.1 816,733 - -1.0 816,733 - -1.5 816,852 + -0.4 817,059 + MPMX19_00796 0.21 -1.3 817,059 + MPMX19_00796 0.21 -2.0 817,059 + MPMX19_00796 0.21 -0.4 817,059 + MPMX19_00796 0.21 -1.6 817,059 + MPMX19_00796 0.21 -0.8 817,059 + MPMX19_00796 0.21 +0.1 817,060 - MPMX19_00796 0.22 -1.5 817,060 - MPMX19_00796 0.22 -1.2 817,060 - MPMX19_00796 0.22 +0.1 817,060 - MPMX19_00796 0.22 -0.2 817,060 - MPMX19_00796 0.22 -0.9 817,308 + MPMX19_00796 0.44 -0.0 817,308 + MPMX19_00796 0.44 +0.1 817,308 + MPMX19_00796 0.44 -0.1 817,308 + MPMX19_00796 0.44 +0.5 817,308 + MPMX19_00796 0.44 -0.8 817,308 + MPMX19_00796 0.44 -2.2 817,308 + MPMX19_00796 0.44 -1.3 817,308 + MPMX19_00796 0.44 -0.2 817,308 + MPMX19_00796 0.44 -0.3 817,308 + MPMX19_00796 0.44 -0.9 817,308 + MPMX19_00796 0.44 -0.3 817,308 + MPMX19_00796 0.44 +0.7 817,309 - MPMX19_00796 0.44 -1.1 817,309 - MPMX19_00796 0.44 -0.8 817,309 - MPMX19_00796 0.44 -0.7 817,309 - MPMX19_00796 0.44 -0.6 817,309 - MPMX19_00796 0.44 -1.1 817,309 - MPMX19_00796 0.44 -0.1 817,309 - MPMX19_00796 0.44 -1.9 817,309 - MPMX19_00796 0.44 +1.3 817,309 - MPMX19_00796 0.44 -0.7 817,309 - MPMX19_00796 0.44 -0.1 817,309 - MPMX19_00796 0.44 +0.4 817,309 - MPMX19_00796 0.44 -0.8 817,350 + MPMX19_00796 0.48 -1.3 817,350 + MPMX19_00796 0.48 -0.0 817,350 + MPMX19_00796 0.48 +0.5 817,350 + MPMX19_00796 0.48 -1.2 817,350 + MPMX19_00796 0.48 -0.2 817,350 + MPMX19_00796 0.48 -0.7 817,350 + MPMX19_00796 0.48 +0.3 817,351 - MPMX19_00796 0.48 -1.2 817,351 - MPMX19_00796 0.48 -0.7 817,351 - MPMX19_00796 0.48 +0.7 817,351 - MPMX19_00796 0.48 -1.9 817,351 - MPMX19_00796 0.48 +0.1 817,351 - MPMX19_00796 0.48 -2.4 817,351 - MPMX19_00796 0.48 +0.0 817,351 - MPMX19_00796 0.48 -1.2 817,374 + MPMX19_00796 0.50 -0.4 817,374 + MPMX19_00796 0.50 +0.5 817,374 + MPMX19_00796 0.50 -1.8 817,375 - MPMX19_00796 0.51 +0.1 817,375 - MPMX19_00796 0.51 -0.4 817,375 - MPMX19_00796 0.51 -1.2 817,375 - MPMX19_00796 0.51 -0.6
Or see this region's nucleotide sequence