Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00771 and MPMX19_00772 are separated by 575 nucleotides MPMX19_00772 and MPMX19_00773 are separated by 135 nucleotides MPMX19_00773 and MPMX19_00774 are separated by 25 nucleotides
MPMX19_00771: MPMX19_00771 - hypothetical protein, at 788,088 to 790,139
_00771
MPMX19_00772: MPMX19_00772 - hypothetical protein, at 790,715 to 791,101
_00772
MPMX19_00773: MPMX19_00773 - hypothetical protein, at 791,237 to 791,599
_00773
MPMX19_00774: MPMX19_00774 - hypothetical protein, at 791,625 to 793,262
_00774
Position (kb) 790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 789.846 kb on + strand, within MPMX19_00771 at 789.846 kb on + strand, within MPMX19_00771 at 789.846 kb on + strand, within MPMX19_00771 at 789.846 kb on + strand, within MPMX19_00771 at 789.846 kb on + strand, within MPMX19_00771 at 789.846 kb on + strand, within MPMX19_00771 at 789.847 kb on - strand, within MPMX19_00771 at 789.847 kb on - strand, within MPMX19_00771 at 789.847 kb on - strand, within MPMX19_00771 at 789.847 kb on - strand, within MPMX19_00771 at 789.847 kb on - strand, within MPMX19_00771 at 789.858 kb on + strand, within MPMX19_00771 at 789.858 kb on + strand, within MPMX19_00771 at 789.858 kb on + strand, within MPMX19_00771 at 789.858 kb on + strand, within MPMX19_00771 at 789.859 kb on - strand, within MPMX19_00771 at 789.859 kb on - strand, within MPMX19_00771 at 789.859 kb on - strand, within MPMX19_00771 at 789.859 kb on - strand, within MPMX19_00771 at 789.891 kb on + strand, within MPMX19_00771 at 789.891 kb on + strand, within MPMX19_00771 at 789.891 kb on + strand, within MPMX19_00771 at 789.891 kb on + strand, within MPMX19_00771 at 789.892 kb on - strand, within MPMX19_00771 at 789.892 kb on - strand, within MPMX19_00771 at 789.892 kb on - strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.930 kb on + strand, within MPMX19_00771 at 789.931 kb on - strand, within MPMX19_00771 at 789.931 kb on - strand, within MPMX19_00771 at 789.931 kb on - strand, within MPMX19_00771 at 789.931 kb on - strand, within MPMX19_00771 at 789.931 kb on - strand, within MPMX19_00771 at 789.931 kb on - strand, within MPMX19_00771 at 790.137 kb on + strand at 790.137 kb on + strand at 790.137 kb on + strand at 790.138 kb on - strand at 790.138 kb on - strand at 790.138 kb on - strand at 790.180 kb on + strand at 790.180 kb on + strand at 790.181 kb on - strand at 790.205 kb on - strand at 790.205 kb on - strand at 790.342 kb on + strand at 790.343 kb on - strand at 790.512 kb on + strand at 790.512 kb on + strand at 790.512 kb on + strand at 790.512 kb on + strand at 790.512 kb on + strand at 790.513 kb on - strand at 790.513 kb on - strand at 790.531 kb on + strand at 790.542 kb on + strand at 790.542 kb on + strand at 790.543 kb on - strand at 790.590 kb on - strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.622 kb on + strand at 790.623 kb on - strand at 790.623 kb on - strand at 790.623 kb on - strand at 790.623 kb on - strand at 790.623 kb on - strand at 790.624 kb on + strand at 790.624 kb on + strand at 790.624 kb on + strand at 790.624 kb on + strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.625 kb on - strand at 790.667 kb on + strand at 790.668 kb on - strand at 790.668 kb on - strand at 790.668 kb on - strand at 790.679 kb on - strand at 790.752 kb on - strand at 790.979 kb on - strand, within MPMX19_00772 at 790.979 kb on - strand, within MPMX19_00772 at 790.979 kb on - strand, within MPMX19_00772 at 791.147 kb on + strand at 791.147 kb on + strand at 791.147 kb on + strand at 791.148 kb on - strand at 791.148 kb on - strand at 791.168 kb on + strand at 791.168 kb on + strand at 791.168 kb on + strand at 791.168 kb on + strand at 791.237 kb on - strand at 791.339 kb on + strand, within MPMX19_00773 at 791.339 kb on + strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.340 kb on - strand, within MPMX19_00773 at 791.555 kb on + strand, within MPMX19_00773 at 791.555 kb on + strand, within MPMX19_00773 at 791.555 kb on + strand, within MPMX19_00773 at 791.556 kb on - strand, within MPMX19_00773 at 791.556 kb on - strand, within MPMX19_00773 at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.606 kb on + strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.607 kb on - strand at 791.626 kb on + strand at 791.626 kb on + strand at 791.626 kb on + strand at 791.626 kb on + strand at 791.626 kb on + strand at 791.627 kb on - strand at 791.627 kb on - strand at 791.627 kb on - strand at 791.797 kb on + strand, within MPMX19_00774 at 791.797 kb on + strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.798 kb on - strand, within MPMX19_00774 at 791.956 kb on + strand, within MPMX19_00774 at 791.956 kb on + strand, within MPMX19_00774 at 791.957 kb on - strand, within MPMX19_00774 at 791.957 kb on - strand, within MPMX19_00774 at 791.965 kb on + strand, within MPMX19_00774 at 791.965 kb on + strand, within MPMX19_00774 at 791.966 kb on - strand, within MPMX19_00774 at 791.966 kb on - strand, within MPMX19_00774 at 792.034 kb on + strand, within MPMX19_00774
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 789,846 + MPMX19_00771 0.86 -1.1 789,846 + MPMX19_00771 0.86 +0.9 789,846 + MPMX19_00771 0.86 +0.6 789,846 + MPMX19_00771 0.86 -0.9 789,846 + MPMX19_00771 0.86 -2.3 789,846 + MPMX19_00771 0.86 +0.3 789,847 - MPMX19_00771 0.86 -1.2 789,847 - MPMX19_00771 0.86 -0.5 789,847 - MPMX19_00771 0.86 -0.1 789,847 - MPMX19_00771 0.86 +1.6 789,847 - MPMX19_00771 0.86 -0.7 789,858 + MPMX19_00771 0.86 -0.4 789,858 + MPMX19_00771 0.86 -0.9 789,858 + MPMX19_00771 0.86 +0.1 789,858 + MPMX19_00771 0.86 -0.9 789,859 - MPMX19_00771 0.86 +0.4 789,859 - MPMX19_00771 0.86 -0.3 789,859 - MPMX19_00771 0.86 -1.0 789,859 - MPMX19_00771 0.86 -2.8 789,891 + MPMX19_00771 0.88 -0.8 789,891 + MPMX19_00771 0.88 -0.4 789,891 + MPMX19_00771 0.88 +0.3 789,891 + MPMX19_00771 0.88 -0.0 789,892 - MPMX19_00771 0.88 -1.1 789,892 - MPMX19_00771 0.88 -1.7 789,892 - MPMX19_00771 0.88 -0.8 789,930 + MPMX19_00771 0.90 -0.6 789,930 + MPMX19_00771 0.90 -0.7 789,930 + MPMX19_00771 0.90 -0.4 789,930 + MPMX19_00771 0.90 -1.7 789,930 + MPMX19_00771 0.90 -0.4 789,930 + MPMX19_00771 0.90 -1.3 789,930 + MPMX19_00771 0.90 -1.1 789,930 + MPMX19_00771 0.90 -0.7 789,930 + MPMX19_00771 0.90 -0.9 789,930 + MPMX19_00771 0.90 -1.7 789,931 - MPMX19_00771 0.90 -1.4 789,931 - MPMX19_00771 0.90 +0.7 789,931 - MPMX19_00771 0.90 -0.2 789,931 - MPMX19_00771 0.90 -1.0 789,931 - MPMX19_00771 0.90 -0.0 789,931 - MPMX19_00771 0.90 +0.5 790,137 + -0.2 790,137 + +0.7 790,137 + +0.4 790,138 - +1.7 790,138 - -0.0 790,138 - -0.9 790,180 + -0.2 790,180 + -0.4 790,181 - +1.3 790,205 - +1.1 790,205 - +0.5 790,342 + -2.0 790,343 - -2.2 790,512 + -1.1 790,512 + +0.1 790,512 + -1.4 790,512 + +1.3 790,512 + +0.4 790,513 - -1.3 790,513 - -0.5 790,531 + -1.3 790,542 + -0.7 790,542 + -2.1 790,543 - -0.3 790,590 - -1.1 790,622 + -3.0 790,622 + +1.7 790,622 + -0.7 790,622 + +0.7 790,622 + -0.9 790,622 + -0.9 790,622 + +0.7 790,623 - -1.8 790,623 - -1.1 790,623 - -1.4 790,623 - -0.9 790,623 - -1.2 790,624 + -1.0 790,624 + +0.3 790,624 + -0.0 790,624 + +0.7 790,625 - -1.8 790,625 - +0.1 790,625 - -0.6 790,625 - -1.1 790,625 - +0.1 790,625 - -1.1 790,625 - -0.8 790,625 - +0.5 790,625 - +0.7 790,625 - +0.9 790,667 + +0.5 790,668 - -0.2 790,668 - -2.2 790,668 - +0.3 790,679 - +0.9 790,752 - -0.7 790,979 - MPMX19_00772 0.68 -0.2 790,979 - MPMX19_00772 0.68 -0.6 790,979 - MPMX19_00772 0.68 -1.9 791,147 + -1.1 791,147 + +0.1 791,147 + -0.0 791,148 - +0.3 791,148 - -0.5 791,168 + -0.9 791,168 + -1.6 791,168 + -0.9 791,168 + +0.4 791,237 - -1.7 791,339 + MPMX19_00773 0.28 -1.6 791,339 + MPMX19_00773 0.28 +0.5 791,340 - MPMX19_00773 0.28 +1.1 791,340 - MPMX19_00773 0.28 +0.3 791,340 - MPMX19_00773 0.28 -0.8 791,340 - MPMX19_00773 0.28 +1.4 791,340 - MPMX19_00773 0.28 -0.3 791,340 - MPMX19_00773 0.28 -1.9 791,555 + MPMX19_00773 0.88 -0.0 791,555 + MPMX19_00773 0.88 -1.3 791,555 + MPMX19_00773 0.88 -1.4 791,556 - MPMX19_00773 0.88 +0.7 791,556 - MPMX19_00773 0.88 -0.6 791,606 + -2.0 791,606 + +0.3 791,606 + +0.1 791,606 + -0.6 791,606 + -0.1 791,606 + +1.6 791,606 + -1.1 791,606 + +0.5 791,606 + +0.1 791,606 + -0.9 791,607 - +0.4 791,607 - +0.1 791,607 - -1.1 791,607 - -1.0 791,607 - -0.7 791,607 - -0.9 791,607 - +0.9 791,607 - -0.3 791,607 - -0.8 791,607 - -1.2 791,607 - -1.3 791,607 - -0.6 791,607 - -2.4 791,607 - +0.5 791,607 - +0.5 791,607 - +1.0 791,607 - -0.3 791,607 - -1.6 791,626 + -0.1 791,626 + +0.1 791,626 + +0.1 791,626 + -2.4 791,626 + +0.3 791,627 - +0.3 791,627 - -2.1 791,627 - -0.1 791,797 + MPMX19_00774 0.11 +0.9 791,797 + MPMX19_00774 0.11 -0.5 791,798 - MPMX19_00774 0.11 +0.6 791,798 - MPMX19_00774 0.11 -0.9 791,798 - MPMX19_00774 0.11 +0.2 791,798 - MPMX19_00774 0.11 -1.4 791,798 - MPMX19_00774 0.11 +0.7 791,798 - MPMX19_00774 0.11 -2.1 791,798 - MPMX19_00774 0.11 -0.9 791,798 - MPMX19_00774 0.11 -0.9 791,798 - MPMX19_00774 0.11 +0.1 791,956 + MPMX19_00774 0.20 -1.3 791,956 + MPMX19_00774 0.20 -0.7 791,957 - MPMX19_00774 0.20 -1.3 791,957 - MPMX19_00774 0.20 -0.2 791,965 + MPMX19_00774 0.21 -0.0 791,965 + MPMX19_00774 0.21 -1.4 791,966 - MPMX19_00774 0.21 -0.3 791,966 - MPMX19_00774 0.21 -2.9 792,034 + MPMX19_00774 0.25 +0.1
Or see this region's nucleotide sequence