Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00746 and MPMX19_00747 are separated by 260 nucleotides MPMX19_00747 and MPMX19_00748 are separated by 141 nucleotides MPMX19_00748 and MPMX19_00749 are separated by 72 nucleotides MPMX19_00749 and MPMX19_00750 overlap by 10 nucleotides
MPMX19_00746: MPMX19_00746 - hypothetical protein, at 764,445 to 764,675
_00746
MPMX19_00747: MPMX19_00747 - Organic hydroperoxide resistance protein OhrB, at 764,936 to 765,355
_00747
MPMX19_00748: MPMX19_00748 - Organic hydroperoxide resistance transcriptional regulator, at 765,497 to 765,955
_00748
MPMX19_00749: MPMX19_00749 - hypothetical protein, at 766,028 to 766,630
_00749
MPMX19_00750: MPMX19_00750 - Haloalkane dehalogenase 2, at 766,621 to 767,601
_00750
Position (kb) 765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.815 kb on + strand at 764.816 kb on - strand at 764.816 kb on - strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 765.093 kb on - strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.626 kb on + strand, within MPMX19_00748 at 765.626 kb on + strand, within MPMX19_00748 at 765.953 kb on + strand at 765.954 kb on - strand at 765.954 kb on - strand at 765.954 kb on - strand at 765.954 kb on - strand at 766.278 kb on - strand, within MPMX19_00749 at 766.278 kb on - strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.307 kb on + strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.308 kb on - strand, within MPMX19_00749 at 766.340 kb on - strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.376 kb on + strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.377 kb on - strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.451 kb on + strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.452 kb on - strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.529 kb on + strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.530 kb on - strand, within MPMX19_00749 at 766.622 kb on + strand at 766.622 kb on + strand at 766.622 kb on + strand at 766.622 kb on + strand at 766.622 kb on + strand at 766.623 kb on - strand at 766.623 kb on - strand at 766.623 kb on - strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.703 kb on + strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.704 kb on - strand at 766.847 kb on + strand, within MPMX19_00750 at 766.848 kb on - strand, within MPMX19_00750
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 764,517 + MPMX19_00746 0.31 -1.1 764,517 + MPMX19_00746 0.31 +0.2 764,517 + MPMX19_00746 0.31 -0.9 764,517 + MPMX19_00746 0.31 -0.4 764,517 + MPMX19_00746 0.31 -0.7 764,518 - MPMX19_00746 0.32 -0.7 764,518 - MPMX19_00746 0.32 +0.5 764,518 - MPMX19_00746 0.32 -1.0 764,518 - MPMX19_00746 0.32 +1.0 764,518 - MPMX19_00746 0.32 +0.7 764,518 - MPMX19_00746 0.32 -2.7 764,758 + -2.1 764,758 + -1.4 764,758 + -2.0 764,758 + -1.1 764,758 + -1.0 764,758 + +0.5 764,758 + +0.4 764,758 + -0.8 764,758 + -1.1 764,758 + -1.2 764,758 + -0.7 764,758 + -1.8 764,758 + -1.3 764,758 + -0.6 764,758 + -0.1 764,758 + -1.1 764,758 + -0.3 764,758 + -1.6 764,758 + +0.4 764,758 + +0.0 764,759 - +1.2 764,759 - -1.2 764,759 - -2.1 764,759 - +0.4 764,759 - -0.5 764,759 - -0.3 764,759 - -0.1 764,759 - +0.2 764,759 - +1.5 764,759 - +0.9 764,759 - -0.6 764,759 - -2.3 764,759 - +0.5 764,759 - +0.2 764,759 - -0.6 764,759 - -1.0 764,759 - -0.0 764,759 - +2.2 764,759 - -0.7 764,759 - -0.8 764,760 + -0.6 764,760 + +0.2 764,760 + -0.8 764,760 + -0.8 764,760 + -0.7 764,760 + -0.3 764,760 + +1.2 764,760 + -0.3 764,760 + -2.1 764,760 + -0.6 764,760 + +0.0 764,760 + +0.3 764,761 - +0.6 764,761 - -0.5 764,761 - -1.5 764,761 - -0.5 764,761 - +1.7 764,761 - -0.5 764,761 - -0.7 764,761 - +0.7 764,761 - -0.1 764,761 - -0.3 764,761 - +0.1 764,761 - +0.9 764,761 - +1.2 764,761 - +0.2 764,761 - -0.8 764,761 - +1.7 764,761 - -1.5 764,761 - -1.6 764,815 + -2.1 764,816 - -0.4 764,816 - -0.8 764,948 + +0.8 764,948 + -0.8 764,948 + -0.4 764,949 - -0.4 764,949 - -1.1 764,949 - +0.2 764,949 - -0.1 764,949 - +0.7 764,949 - +1.3 765,093 - MPMX19_00747 0.37 +0.0 765,292 + MPMX19_00747 0.85 -1.3 765,292 + MPMX19_00747 0.85 +0.3 765,292 + MPMX19_00747 0.85 -2.3 765,292 + MPMX19_00747 0.85 -0.8 765,293 - MPMX19_00747 0.85 -0.4 765,293 - MPMX19_00747 0.85 -0.1 765,293 - MPMX19_00747 0.85 -1.2 765,293 - MPMX19_00747 0.85 -0.3 765,293 - MPMX19_00747 0.85 +1.0 765,305 + MPMX19_00747 0.88 -0.7 765,305 + MPMX19_00747 0.88 +0.2 765,305 + MPMX19_00747 0.88 -0.6 765,305 + MPMX19_00747 0.88 -1.8 765,305 + MPMX19_00747 0.88 -1.2 765,306 - MPMX19_00747 0.88 +0.5 765,306 - MPMX19_00747 0.88 +0.2 765,306 - MPMX19_00747 0.88 -2.1 765,306 - MPMX19_00747 0.88 -0.3 765,554 + MPMX19_00748 0.12 -1.8 765,554 + MPMX19_00748 0.12 -0.1 765,554 + MPMX19_00748 0.12 -1.3 765,554 + MPMX19_00748 0.12 -1.4 765,554 + MPMX19_00748 0.12 -1.4 765,617 + MPMX19_00748 0.26 -0.3 765,617 + MPMX19_00748 0.26 -3.2 765,617 + MPMX19_00748 0.26 +0.3 765,617 + MPMX19_00748 0.26 -2.3 765,617 + MPMX19_00748 0.26 +0.2 765,617 + MPMX19_00748 0.26 +0.3 765,617 + MPMX19_00748 0.26 -1.1 765,626 + MPMX19_00748 0.28 -1.3 765,626 + MPMX19_00748 0.28 -0.3 765,953 + -0.1 765,954 - +1.7 765,954 - +1.4 765,954 - +0.5 765,954 - -0.4 766,278 - MPMX19_00749 0.41 +1.7 766,278 - MPMX19_00749 0.41 +0.3 766,307 + MPMX19_00749 0.46 -0.7 766,307 + MPMX19_00749 0.46 -2.0 766,307 + MPMX19_00749 0.46 -0.4 766,307 + MPMX19_00749 0.46 -0.9 766,307 + MPMX19_00749 0.46 -0.4 766,307 + MPMX19_00749 0.46 -0.1 766,307 + MPMX19_00749 0.46 -0.2 766,308 - MPMX19_00749 0.46 -0.4 766,308 - MPMX19_00749 0.46 -0.7 766,308 - MPMX19_00749 0.46 +1.0 766,308 - MPMX19_00749 0.46 -0.1 766,308 - MPMX19_00749 0.46 +0.3 766,308 - MPMX19_00749 0.46 -2.4 766,308 - MPMX19_00749 0.46 +0.1 766,308 - MPMX19_00749 0.46 -0.2 766,308 - MPMX19_00749 0.46 -1.5 766,308 - MPMX19_00749 0.46 -0.0 766,308 - MPMX19_00749 0.46 +0.1 766,340 - MPMX19_00749 0.52 -0.8 766,376 + MPMX19_00749 0.58 +0.3 766,376 + MPMX19_00749 0.58 -1.4 766,376 + MPMX19_00749 0.58 -1.4 766,376 + MPMX19_00749 0.58 +1.0 766,376 + MPMX19_00749 0.58 +0.7 766,376 + MPMX19_00749 0.58 -1.4 766,376 + MPMX19_00749 0.58 -1.0 766,376 + MPMX19_00749 0.58 +0.6 766,376 + MPMX19_00749 0.58 +0.4 766,376 + MPMX19_00749 0.58 -0.3 766,376 + MPMX19_00749 0.58 +1.3 766,376 + MPMX19_00749 0.58 -0.8 766,376 + MPMX19_00749 0.58 -0.3 766,376 + MPMX19_00749 0.58 -0.4 766,376 + MPMX19_00749 0.58 -1.0 766,376 + MPMX19_00749 0.58 +0.1 766,376 + MPMX19_00749 0.58 -0.4 766,376 + MPMX19_00749 0.58 +0.1 766,376 + MPMX19_00749 0.58 -0.2 766,376 + MPMX19_00749 0.58 -1.4 766,377 - MPMX19_00749 0.58 -0.2 766,377 - MPMX19_00749 0.58 +0.3 766,377 - MPMX19_00749 0.58 +0.7 766,377 - MPMX19_00749 0.58 +0.6 766,377 - MPMX19_00749 0.58 -0.9 766,377 - MPMX19_00749 0.58 +0.1 766,377 - MPMX19_00749 0.58 +0.5 766,377 - MPMX19_00749 0.58 -0.9 766,377 - MPMX19_00749 0.58 +0.1 766,377 - MPMX19_00749 0.58 -0.3 766,451 + MPMX19_00749 0.70 -1.7 766,451 + MPMX19_00749 0.70 -0.9 766,451 + MPMX19_00749 0.70 -0.1 766,451 + MPMX19_00749 0.70 +0.1 766,451 + MPMX19_00749 0.70 -1.6 766,451 + MPMX19_00749 0.70 -0.9 766,451 + MPMX19_00749 0.70 +0.4 766,451 + MPMX19_00749 0.70 -1.0 766,451 + MPMX19_00749 0.70 -1.1 766,451 + MPMX19_00749 0.70 -1.2 766,451 + MPMX19_00749 0.70 -0.4 766,451 + MPMX19_00749 0.70 -0.6 766,451 + MPMX19_00749 0.70 -0.5 766,452 - MPMX19_00749 0.70 +0.7 766,452 - MPMX19_00749 0.70 -1.6 766,452 - MPMX19_00749 0.70 -0.5 766,452 - MPMX19_00749 0.70 +0.1 766,452 - MPMX19_00749 0.70 +0.1 766,452 - MPMX19_00749 0.70 +0.4 766,452 - MPMX19_00749 0.70 -1.3 766,529 + MPMX19_00749 0.83 -0.9 766,529 + MPMX19_00749 0.83 +0.8 766,529 + MPMX19_00749 0.83 -0.7 766,529 + MPMX19_00749 0.83 +0.2 766,529 + MPMX19_00749 0.83 -1.3 766,529 + MPMX19_00749 0.83 +0.3 766,530 - MPMX19_00749 0.83 -1.1 766,530 - MPMX19_00749 0.83 +0.1 766,530 - MPMX19_00749 0.83 -0.2 766,530 - MPMX19_00749 0.83 -0.2 766,530 - MPMX19_00749 0.83 +0.4 766,530 - MPMX19_00749 0.83 +0.7 766,530 - MPMX19_00749 0.83 -0.9 766,530 - MPMX19_00749 0.83 -1.4 766,530 - MPMX19_00749 0.83 -0.6 766,622 + -1.3 766,622 + -0.1 766,622 + +0.1 766,622 + -1.1 766,622 + -1.3 766,623 - -0.6 766,623 - -1.1 766,623 - -0.1 766,703 + -1.6 766,703 + -0.1 766,703 + -1.6 766,703 + -0.3 766,703 + +0.3 766,703 + -0.6 766,703 + +0.1 766,704 - +0.6 766,704 - -1.1 766,704 - +1.7 766,704 - -3.4 766,704 - +0.6 766,704 - -0.2 766,704 - -2.2 766,704 - -0.5 766,704 - +0.0 766,847 + MPMX19_00750 0.23 +0.1 766,848 - MPMX19_00750 0.23 +0.5
Or see this region's nucleotide sequence