Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00674

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00672 and MPMX19_00673 are separated by 178 nucleotidesMPMX19_00673 and MPMX19_00674 are separated by 37 nucleotidesMPMX19_00674 and MPMX19_00675 are separated by 68 nucleotides MPMX19_00672: MPMX19_00672 - putative zinc protease, at 694,535 to 695,794 _00672 MPMX19_00673: MPMX19_00673 - [Ribosomal protein S5]-alanine N-acetyltransferase, at 695,973 to 696,563 _00673 MPMX19_00674: MPMX19_00674 - hypothetical protein, at 696,601 to 696,870 _00674 MPMX19_00675: MPMX19_00675 - Peptidoglycan-associated lipoprotein, at 696,939 to 698,333 _00675 Position (kb) 696 697Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 695.624 kb on + strand, within MPMX19_00672at 695.624 kb on + strand, within MPMX19_00672at 695.624 kb on + strand, within MPMX19_00672at 695.624 kb on + strand, within MPMX19_00672at 695.624 kb on + strand, within MPMX19_00672at 695.624 kb on + strand, within MPMX19_00672at 695.624 kb on + strand, within MPMX19_00672at 695.624 kb on + strand, within MPMX19_00672at 695.624 kb on + strand, within MPMX19_00672at 695.624 kb on + strand, within MPMX19_00672at 695.625 kb on - strand, within MPMX19_00672at 695.625 kb on - strand, within MPMX19_00672at 695.625 kb on - strand, within MPMX19_00672at 695.625 kb on - strand, within MPMX19_00672at 695.625 kb on - strand, within MPMX19_00672at 695.625 kb on - strand, within MPMX19_00672at 695.625 kb on - strand, within MPMX19_00672at 695.625 kb on - strand, within MPMX19_00672at 695.625 kb on - strand, within MPMX19_00672at 695.765 kb on + strandat 695.765 kb on + strandat 695.765 kb on + strandat 695.765 kb on + strandat 695.765 kb on + strandat 695.766 kb on - strandat 695.766 kb on - strandat 695.766 kb on - strandat 695.766 kb on - strandat 695.862 kb on + strandat 695.862 kb on + strandat 695.862 kb on + strandat 695.862 kb on + strandat 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.039 kb on + strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.040 kb on - strand, within MPMX19_00673at 696.210 kb on + strand, within MPMX19_00673at 696.211 kb on - strand, within MPMX19_00673at 696.309 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.327 kb on + strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.328 kb on - strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.342 kb on + strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.343 kb on - strand, within MPMX19_00673at 696.480 kb on + strand, within MPMX19_00673at 696.480 kb on + strand, within MPMX19_00673at 696.480 kb on + strand, within MPMX19_00673at 696.481 kb on - strand, within MPMX19_00673at 696.493 kb on - strand, within MPMX19_00673at 696.531 kb on + strandat 696.531 kb on + strandat 696.531 kb on + strandat 696.531 kb on + strandat 696.531 kb on + strandat 696.531 kb on + strandat 696.532 kb on - strandat 696.532 kb on - strandat 696.532 kb on - strandat 696.532 kb on - strandat 696.532 kb on - strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.561 kb on + strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.562 kb on - strandat 696.744 kb on + strand, within MPMX19_00674at 696.744 kb on + strand, within MPMX19_00674at 696.744 kb on + strand, within MPMX19_00674at 696.744 kb on + strand, within MPMX19_00674at 696.744 kb on + strand, within MPMX19_00674at 696.745 kb on - strand, within MPMX19_00674at 696.745 kb on - strand, within MPMX19_00674at 696.745 kb on - strand, within MPMX19_00674at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675at 697.382 kb on - strand, within MPMX19_00675

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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695,624 + MPMX19_00672 0.86 -0.3
695,624 + MPMX19_00672 0.86 -0.6
695,624 + MPMX19_00672 0.86 -0.8
695,624 + MPMX19_00672 0.86 -0.6
695,624 + MPMX19_00672 0.86 -1.0
695,624 + MPMX19_00672 0.86 -0.8
695,624 + MPMX19_00672 0.86 +0.2
695,624 + MPMX19_00672 0.86 +0.2
695,624 + MPMX19_00672 0.86 +0.3
695,624 + MPMX19_00672 0.86 -0.8
695,625 - MPMX19_00672 0.87 +0.6
695,625 - MPMX19_00672 0.87 -0.1
695,625 - MPMX19_00672 0.87 -1.8
695,625 - MPMX19_00672 0.87 +0.4
695,625 - MPMX19_00672 0.87 -0.8
695,625 - MPMX19_00672 0.87 -0.3
695,625 - MPMX19_00672 0.87 -1.0
695,625 - MPMX19_00672 0.87 +1.0
695,625 - MPMX19_00672 0.87 +0.2
695,765 + -1.5
695,765 + -0.3
695,765 + -1.7
695,765 + -1.7
695,765 + -0.4
695,766 - -3.0
695,766 - -0.4
695,766 - -1.7
695,766 - +0.5
695,862 + -1.6
695,862 + -0.5
695,862 + -0.6
695,862 + +0.0
696,039 + MPMX19_00673 0.11 +0.2
696,039 + MPMX19_00673 0.11 +0.7
696,039 + MPMX19_00673 0.11 +0.2
696,039 + MPMX19_00673 0.11 -2.1
696,039 + MPMX19_00673 0.11 +0.0
696,039 + MPMX19_00673 0.11 +0.4
696,039 + MPMX19_00673 0.11 -0.9
696,039 + MPMX19_00673 0.11 -0.4
696,039 + MPMX19_00673 0.11 +0.2
696,039 + MPMX19_00673 0.11 +0.2
696,039 + MPMX19_00673 0.11 -1.2
696,039 + MPMX19_00673 0.11 +0.5
696,039 + MPMX19_00673 0.11 +0.7
696,039 + MPMX19_00673 0.11 -1.7
696,039 + MPMX19_00673 0.11 -0.8
696,039 + MPMX19_00673 0.11 +0.7
696,039 + MPMX19_00673 0.11 -0.6
696,039 + MPMX19_00673 0.11 -1.6
696,039 + MPMX19_00673 0.11 -0.1
696,039 + MPMX19_00673 0.11 +0.2
696,039 + MPMX19_00673 0.11 -0.3
696,039 + MPMX19_00673 0.11 -0.8
696,039 + MPMX19_00673 0.11 +1.4
696,039 + MPMX19_00673 0.11 -0.3
696,040 - MPMX19_00673 0.11 +0.7
696,040 - MPMX19_00673 0.11 -0.6
696,040 - MPMX19_00673 0.11 -0.8
696,040 - MPMX19_00673 0.11 -2.1
696,040 - MPMX19_00673 0.11 -0.8
696,040 - MPMX19_00673 0.11 -0.5
696,040 - MPMX19_00673 0.11 -0.7
696,040 - MPMX19_00673 0.11 -1.1
696,040 - MPMX19_00673 0.11 -1.0
696,040 - MPMX19_00673 0.11 -0.5
696,040 - MPMX19_00673 0.11 +0.7
696,040 - MPMX19_00673 0.11 -0.8
696,040 - MPMX19_00673 0.11 -0.5
696,040 - MPMX19_00673 0.11 -0.7
696,040 - MPMX19_00673 0.11 -0.8
696,040 - MPMX19_00673 0.11 -0.7
696,040 - MPMX19_00673 0.11 -2.1
696,040 - MPMX19_00673 0.11 +1.7
696,040 - MPMX19_00673 0.11 -0.3
696,210 + MPMX19_00673 0.40 +0.3
696,211 - MPMX19_00673 0.40 -1.8
696,309 + MPMX19_00673 0.57 +0.4
696,327 + MPMX19_00673 0.60 +0.6
696,327 + MPMX19_00673 0.60 -0.5
696,327 + MPMX19_00673 0.60 +1.9
696,327 + MPMX19_00673 0.60 -0.7
696,327 + MPMX19_00673 0.60 -0.2
696,327 + MPMX19_00673 0.60 -1.5
696,327 + MPMX19_00673 0.60 -0.8
696,327 + MPMX19_00673 0.60 -0.9
696,327 + MPMX19_00673 0.60 +0.0
696,328 - MPMX19_00673 0.60 -1.7
696,328 - MPMX19_00673 0.60 -0.3
696,328 - MPMX19_00673 0.60 +0.1
696,328 - MPMX19_00673 0.60 -1.5
696,328 - MPMX19_00673 0.60 -2.5
696,328 - MPMX19_00673 0.60 -1.7
696,342 + MPMX19_00673 0.62 +1.2
696,342 + MPMX19_00673 0.62 +0.3
696,342 + MPMX19_00673 0.62 -0.2
696,342 + MPMX19_00673 0.62 +1.4
696,342 + MPMX19_00673 0.62 -0.3
696,342 + MPMX19_00673 0.62 -1.4
696,342 + MPMX19_00673 0.62 +0.3
696,342 + MPMX19_00673 0.62 +0.5
696,342 + MPMX19_00673 0.62 -0.5
696,342 + MPMX19_00673 0.62 -0.0
696,342 + MPMX19_00673 0.62 -1.4
696,342 + MPMX19_00673 0.62 -0.8
696,343 - MPMX19_00673 0.63 -0.6
696,343 - MPMX19_00673 0.63 -0.8
696,343 - MPMX19_00673 0.63 -1.5
696,343 - MPMX19_00673 0.63 -0.9
696,343 - MPMX19_00673 0.63 +0.7
696,343 - MPMX19_00673 0.63 +1.5
696,343 - MPMX19_00673 0.63 -0.8
696,343 - MPMX19_00673 0.63 +0.0
696,343 - MPMX19_00673 0.63 +0.0
696,343 - MPMX19_00673 0.63 -1.4
696,343 - MPMX19_00673 0.63 -1.6
696,343 - MPMX19_00673 0.63 +0.0
696,480 + MPMX19_00673 0.86 +0.7
696,480 + MPMX19_00673 0.86 -0.8
696,480 + MPMX19_00673 0.86 -1.8
696,481 - MPMX19_00673 0.86 -1.1
696,493 - MPMX19_00673 0.88 +0.1
696,531 + +1.7
696,531 + +0.6
696,531 + +0.7
696,531 + -0.0
696,531 + +0.2
696,531 + +0.7
696,532 - +0.1
696,532 - -0.2
696,532 - -0.6
696,532 - -0.4
696,532 - +1.3
696,561 + +0.5
696,561 + -0.2
696,561 + -1.6
696,561 + -0.4
696,561 + +0.7
696,561 + -0.3
696,561 + -0.3
696,562 - -0.2
696,562 - +0.4
696,562 - +0.3
696,562 - -0.3
696,562 - +0.6
696,562 - +0.2
696,562 - -0.3
696,562 - -0.1
696,562 - -2.4
696,562 - -1.1
696,744 + MPMX19_00674 0.53 -1.1
696,744 + MPMX19_00674 0.53 -1.6
696,744 + MPMX19_00674 0.53 -0.7
696,744 + MPMX19_00674 0.53 -1.9
696,744 + MPMX19_00674 0.53 -0.3
696,745 - MPMX19_00674 0.53 -1.2
696,745 - MPMX19_00674 0.53 +1.2
696,745 - MPMX19_00674 0.53 -0.1
697,382 - MPMX19_00675 0.32 +0.0
697,382 - MPMX19_00675 0.32 +0.9
697,382 - MPMX19_00675 0.32 -1.3
697,382 - MPMX19_00675 0.32 +1.1
697,382 - MPMX19_00675 0.32 -1.3
697,382 - MPMX19_00675 0.32 +0.2
697,382 - MPMX19_00675 0.32 -1.2

Or see this region's nucleotide sequence