Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00608 and MPMX19_00609 are separated by 526 nucleotides MPMX19_00609 and MPMX19_00610 are separated by 33 nucleotides MPMX19_00610 and MPMX19_00611 are separated by 28 nucleotides
MPMX19_00608: MPMX19_00608 - hypothetical protein, at 622,269 to 622,559
_00608
MPMX19_00609: MPMX19_00609 - Chemotaxis protein CheY, at 623,086 to 623,481
_00609
MPMX19_00610: MPMX19_00610 - hypothetical protein, at 623,515 to 624,939
_00610
MPMX19_00611: MPMX19_00611 - (3S)-malyl-CoA thioesterase, at 624,968 to 625,837
_00611
Position (kb) 623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.628 kb on + strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.644 kb on - strand at 622.780 kb on - strand at 622.780 kb on - strand at 622.839 kb on + strand at 622.840 kb on - strand at 622.859 kb on - strand at 622.861 kb on - strand at 622.861 kb on - strand at 622.956 kb on + strand at 622.995 kb on + strand at 622.996 kb on - strand at 622.996 kb on - strand at 622.996 kb on - strand at 622.997 kb on + strand at 622.998 kb on - strand at 622.998 kb on - strand at 623.000 kb on + strand at 623.000 kb on + strand at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.512 kb on - strand at 623.606 kb on + strand at 623.606 kb on + strand at 623.607 kb on - strand at 623.885 kb on + strand, within MPMX19_00610 at 623.885 kb on + strand, within MPMX19_00610 at 623.885 kb on + strand, within MPMX19_00610 at 623.885 kb on + strand, within MPMX19_00610 at 623.885 kb on + strand, within MPMX19_00610 at 623.886 kb on - strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.275 kb on + strand, within MPMX19_00610 at 624.275 kb on + strand, within MPMX19_00610 at 624.276 kb on - strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.604 kb on + strand, within MPMX19_00610 at 624.604 kb on + strand, within MPMX19_00610 at 624.604 kb on + strand, within MPMX19_00610 at 624.604 kb on + strand, within MPMX19_00610 at 624.605 kb on - strand, within MPMX19_00610 at 624.605 kb on - strand, within MPMX19_00610 at 624.605 kb on - strand, within MPMX19_00610 at 624.605 kb on - strand, within MPMX19_00610 at 624.916 kb on + strand at 624.916 kb on + strand at 624.917 kb on - strand at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.654 kb on - strand, within MPMX19_00611 at 625.654 kb on - strand, within MPMX19_00611 at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 622,535 + -1.8 622,535 + -0.3 622,535 + -2.1 622,535 + +0.4 622,535 + +0.3 622,536 - -0.6 622,536 - +2.0 622,536 - -0.3 622,536 - -1.6 622,628 + -1.1 622,629 - -1.2 622,629 - -0.4 622,629 - -1.1 622,629 - +0.4 622,630 + -1.1 622,630 + +0.3 622,630 + -0.8 622,630 + -0.4 622,644 - -1.5 622,780 - -0.5 622,780 - -1.2 622,839 + -0.2 622,840 - -0.2 622,859 - -1.6 622,861 - -1.9 622,861 - -2.1 622,956 + +0.4 622,995 + -1.6 622,996 - -0.8 622,996 - -0.1 622,996 - -1.2 622,997 + +1.2 622,998 - +0.4 622,998 - -0.4 623,000 + -1.4 623,000 + -0.2 623,427 + MPMX19_00609 0.86 +0.2 623,427 + MPMX19_00609 0.86 -1.9 623,427 + MPMX19_00609 0.86 -0.4 623,427 + MPMX19_00609 0.86 -1.0 623,427 + MPMX19_00609 0.86 +0.2 623,427 + MPMX19_00609 0.86 +0.2 623,427 + MPMX19_00609 0.86 -0.2 623,427 + MPMX19_00609 0.86 -0.8 623,428 - MPMX19_00609 0.86 -0.4 623,428 - MPMX19_00609 0.86 -1.4 623,428 - MPMX19_00609 0.86 -0.7 623,428 - MPMX19_00609 0.86 +0.4 623,428 - MPMX19_00609 0.86 +0.4 623,512 - -1.2 623,606 + +0.5 623,606 + -2.1 623,607 - -2.4 623,885 + MPMX19_00610 0.26 +0.3 623,885 + MPMX19_00610 0.26 -0.8 623,885 + MPMX19_00610 0.26 -0.7 623,885 + MPMX19_00610 0.26 +0.4 623,885 + MPMX19_00610 0.26 -1.3 623,886 - MPMX19_00610 0.26 -1.2 624,259 + MPMX19_00610 0.52 -1.2 624,259 + MPMX19_00610 0.52 -0.8 624,259 + MPMX19_00610 0.52 +0.0 624,259 + MPMX19_00610 0.52 -1.7 624,259 + MPMX19_00610 0.52 -1.7 624,259 + MPMX19_00610 0.52 -0.2 624,259 + MPMX19_00610 0.52 +1.1 624,259 + MPMX19_00610 0.52 +0.2 624,259 + MPMX19_00610 0.52 +0.8 624,259 + MPMX19_00610 0.52 +0.1 624,259 + MPMX19_00610 0.52 +0.2 624,259 + MPMX19_00610 0.52 -1.2 624,259 + MPMX19_00610 0.52 +0.3 624,259 + MPMX19_00610 0.52 -1.6 624,259 + MPMX19_00610 0.52 -1.4 624,259 + MPMX19_00610 0.52 +0.5 624,259 + MPMX19_00610 0.52 -0.9 624,259 + MPMX19_00610 0.52 +0.2 624,259 + MPMX19_00610 0.52 -1.1 624,259 + MPMX19_00610 0.52 -3.6 624,259 + MPMX19_00610 0.52 -0.1 624,259 + MPMX19_00610 0.52 -0.2 624,259 + MPMX19_00610 0.52 +1.5 624,259 + MPMX19_00610 0.52 -2.3 624,259 + MPMX19_00610 0.52 +0.1 624,259 + MPMX19_00610 0.52 -0.1 624,259 + MPMX19_00610 0.52 -0.9 624,259 + MPMX19_00610 0.52 -0.3 624,259 + MPMX19_00610 0.52 -0.1 624,259 + MPMX19_00610 0.52 -0.8 624,259 + MPMX19_00610 0.52 -0.6 624,259 + MPMX19_00610 0.52 -0.1 624,259 + MPMX19_00610 0.52 -1.1 624,259 + MPMX19_00610 0.52 +0.3 624,259 + MPMX19_00610 0.52 -0.6 624,259 + MPMX19_00610 0.52 +0.2 624,259 + MPMX19_00610 0.52 -0.2 624,260 - MPMX19_00610 0.52 -1.4 624,260 - MPMX19_00610 0.52 +1.3 624,260 - MPMX19_00610 0.52 +0.4 624,260 - MPMX19_00610 0.52 -1.9 624,260 - MPMX19_00610 0.52 +0.6 624,260 - MPMX19_00610 0.52 -1.4 624,260 - MPMX19_00610 0.52 +0.0 624,260 - MPMX19_00610 0.52 -0.2 624,260 - MPMX19_00610 0.52 +0.2 624,260 - MPMX19_00610 0.52 -1.4 624,260 - MPMX19_00610 0.52 -1.8 624,260 - MPMX19_00610 0.52 -3.0 624,260 - MPMX19_00610 0.52 +2.5 624,260 - MPMX19_00610 0.52 -0.8 624,260 - MPMX19_00610 0.52 +1.3 624,260 - MPMX19_00610 0.52 -2.2 624,260 - MPMX19_00610 0.52 +1.2 624,260 - MPMX19_00610 0.52 -0.6 624,260 - MPMX19_00610 0.52 -1.2 624,260 - MPMX19_00610 0.52 -1.1 624,260 - MPMX19_00610 0.52 -0.1 624,260 - MPMX19_00610 0.52 -1.4 624,260 - MPMX19_00610 0.52 -0.6 624,260 - MPMX19_00610 0.52 -0.9 624,260 - MPMX19_00610 0.52 +0.7 624,260 - MPMX19_00610 0.52 -0.2 624,260 - MPMX19_00610 0.52 -0.2 624,260 - MPMX19_00610 0.52 +0.5 624,260 - MPMX19_00610 0.52 +0.3 624,260 - MPMX19_00610 0.52 +0.9 624,260 - MPMX19_00610 0.52 -1.0 624,260 - MPMX19_00610 0.52 -0.6 624,260 - MPMX19_00610 0.52 -0.1 624,260 - MPMX19_00610 0.52 -0.7 624,260 - MPMX19_00610 0.52 -0.2 624,260 - MPMX19_00610 0.52 +0.3 624,260 - MPMX19_00610 0.52 +0.0 624,261 + MPMX19_00610 0.52 -2.4 624,261 + MPMX19_00610 0.52 -1.0 624,261 + MPMX19_00610 0.52 -1.2 624,261 + MPMX19_00610 0.52 -1.1 624,261 + MPMX19_00610 0.52 +0.9 624,261 + MPMX19_00610 0.52 -1.9 624,261 + MPMX19_00610 0.52 +1.8 624,261 + MPMX19_00610 0.52 -0.1 624,261 + MPMX19_00610 0.52 -0.8 624,261 + MPMX19_00610 0.52 +0.5 624,262 - MPMX19_00610 0.52 -0.2 624,262 - MPMX19_00610 0.52 -1.2 624,262 - MPMX19_00610 0.52 -0.7 624,262 - MPMX19_00610 0.52 -1.0 624,262 - MPMX19_00610 0.52 +0.3 624,262 - MPMX19_00610 0.52 -1.1 624,262 - MPMX19_00610 0.52 +0.9 624,262 - MPMX19_00610 0.52 +0.5 624,275 + MPMX19_00610 0.53 -1.1 624,275 + MPMX19_00610 0.53 +1.2 624,276 - MPMX19_00610 0.53 +0.2 624,511 + MPMX19_00610 0.70 -0.2 624,511 + MPMX19_00610 0.70 -2.1 624,511 + MPMX19_00610 0.70 -1.9 624,511 + MPMX19_00610 0.70 +0.2 624,511 + MPMX19_00610 0.70 -0.3 624,511 + MPMX19_00610 0.70 -0.6 624,511 + MPMX19_00610 0.70 -0.2 624,511 + MPMX19_00610 0.70 -2.5 624,511 + MPMX19_00610 0.70 +0.2 624,511 + MPMX19_00610 0.70 +1.4 624,511 + MPMX19_00610 0.70 -0.2 624,512 - MPMX19_00610 0.70 -1.2 624,512 - MPMX19_00610 0.70 +0.3 624,512 - MPMX19_00610 0.70 -1.7 624,512 - MPMX19_00610 0.70 -0.4 624,512 - MPMX19_00610 0.70 +0.8 624,604 + MPMX19_00610 0.76 -0.7 624,604 + MPMX19_00610 0.76 -1.7 624,604 + MPMX19_00610 0.76 +1.3 624,604 + MPMX19_00610 0.76 -0.4 624,605 - MPMX19_00610 0.76 -1.1 624,605 - MPMX19_00610 0.76 +1.1 624,605 - MPMX19_00610 0.76 -0.9 624,605 - MPMX19_00610 0.76 -0.3 624,916 + -1.6 624,916 + -1.0 624,917 - +0.3 625,284 + MPMX19_00611 0.36 -0.2 625,284 + MPMX19_00611 0.36 -1.6 625,284 + MPMX19_00611 0.36 +1.6 625,284 + MPMX19_00611 0.36 +0.2 625,284 + MPMX19_00611 0.36 +0.2 625,284 + MPMX19_00611 0.36 -0.8 625,284 + MPMX19_00611 0.36 -0.6 625,285 - MPMX19_00611 0.36 -0.8 625,285 - MPMX19_00611 0.36 -0.6 625,285 - MPMX19_00611 0.36 -1.2 625,285 - MPMX19_00611 0.36 +0.4 625,285 - MPMX19_00611 0.36 -0.2 625,599 + MPMX19_00611 0.73 -0.4 625,599 + MPMX19_00611 0.73 +0.2 625,599 + MPMX19_00611 0.73 +0.5 625,599 + MPMX19_00611 0.73 +0.6 625,600 - MPMX19_00611 0.73 -0.8 625,600 - MPMX19_00611 0.73 -0.8 625,600 - MPMX19_00611 0.73 +2.5 625,654 - MPMX19_00611 0.79 -0.2 625,654 - MPMX19_00611 0.79 -1.3 625,800 + +2.1 625,800 + -2.2 625,800 + -0.8 625,800 + +0.4 625,800 + -1.2 625,800 + +0.5 625,800 + -0.8 625,800 + +0.5 625,800 + -0.2 625,800 + -0.6 625,800 + -0.4 625,800 + +0.0 625,800 + -1.1 625,800 + +0.4 625,800 + -0.6 625,800 + -1.4 625,800 + +0.2 625,800 + +0.1 625,800 + -0.6 625,800 + -0.6 625,800 + -0.6 625,800 + -0.7 625,800 + +0.1 625,801 - -1.4 625,801 - -0.8 625,801 - -1.1 625,801 - -0.7 625,801 - -0.2 625,801 - -0.1 625,801 - -0.4 625,801 - -1.8 625,801 - -0.1 625,801 - +0.4 625,801 - +1.4 625,801 - +0.6 625,801 - +0.2 625,801 - +0.4 625,801 - -1.2 625,801 - +0.2 625,801 - -0.6 625,801 - -0.8 625,801 - -0.3 625,801 - -0.4 625,801 - -1.3 625,801 - +1.0 625,801 - +1.5 625,801 - -0.9 625,801 - -0.9 625,801 - +0.8 625,801 - -0.2 625,879 + -0.3
Or see this region's nucleotide sequence