Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00570 and MPMX19_00571 are separated by 28 nucleotides MPMX19_00571 and MPMX19_00572 are separated by 155 nucleotides MPMX19_00572 and MPMX19_00573 are separated by 20 nucleotides
MPMX19_00570: MPMX19_00570 - L-Ala-D/L-Glu epimerase, at 585,580 to 586,572
_00570
MPMX19_00571: MPMX19_00571 - Putative pterin-4-alpha-carbinolamine dehydratase, at 586,601 to 587,011
_00571
MPMX19_00572: MPMX19_00572 - Type-4 uracil-DNA glycosylase, at 587,167 to 587,772
_00572
MPMX19_00573: MPMX19_00573 - hypothetical protein, at 587,793 to 588,452
_00573
Position (kb) 586
587
588 Strain fitness (log2 ratio) -2
-1
0
1
2 at 585.727 kb on + strand, within MPMX19_00570 at 585.728 kb on - strand, within MPMX19_00570 at 585.736 kb on + strand, within MPMX19_00570 at 585.737 kb on - strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.955 kb on + strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 585.956 kb on - strand, within MPMX19_00570 at 586.306 kb on + strand, within MPMX19_00570 at 586.306 kb on + strand, within MPMX19_00570 at 586.307 kb on - strand, within MPMX19_00570 at 586.307 kb on - strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.468 kb on + strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.469 kb on - strand, within MPMX19_00570 at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.525 kb on + strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.526 kb on - strand at 586.570 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.617 kb on + strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.618 kb on - strand at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.653 kb on + strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.654 kb on - strand, within MPMX19_00571 at 586.761 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.883 kb on + strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.884 kb on - strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.911 kb on + strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 586.912 kb on - strand, within MPMX19_00571 at 587.055 kb on + strand at 587.055 kb on + strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.056 kb on - strand at 587.063 kb on + strand at 587.063 kb on + strand at 587.064 kb on - strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.070 kb on + strand at 587.071 kb on - strand at 587.071 kb on - strand at 587.071 kb on - strand at 587.203 kb on + strand at 587.203 kb on + strand at 587.203 kb on + strand at 587.203 kb on + strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.204 kb on - strand at 587.548 kb on + strand, within MPMX19_00572 at 587.548 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.692 kb on + strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.693 kb on - strand, within MPMX19_00572 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.872 kb on + strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.873 kb on - strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.908 kb on + strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 587.909 kb on - strand, within MPMX19_00573 at 588.001 kb on + strand, within MPMX19_00573 at 588.001 kb on + strand, within MPMX19_00573 at 588.001 kb on + strand, within MPMX19_00573 at 588.002 kb on - strand, within MPMX19_00573
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 585,727 + MPMX19_00570 0.15 -1.2 585,728 - MPMX19_00570 0.15 -1.4 585,736 + MPMX19_00570 0.16 +0.0 585,737 - MPMX19_00570 0.16 +0.3 585,955 + MPMX19_00570 0.38 -0.1 585,955 + MPMX19_00570 0.38 -0.5 585,955 + MPMX19_00570 0.38 -1.0 585,955 + MPMX19_00570 0.38 -0.7 585,955 + MPMX19_00570 0.38 -0.3 585,955 + MPMX19_00570 0.38 +1.3 585,955 + MPMX19_00570 0.38 +1.1 585,955 + MPMX19_00570 0.38 -0.2 585,955 + MPMX19_00570 0.38 -1.9 585,956 - MPMX19_00570 0.38 -0.4 585,956 - MPMX19_00570 0.38 -0.9 585,956 - MPMX19_00570 0.38 +0.2 585,956 - MPMX19_00570 0.38 -0.4 585,956 - MPMX19_00570 0.38 -1.7 586,306 + MPMX19_00570 0.73 -0.7 586,306 + MPMX19_00570 0.73 +0.6 586,307 - MPMX19_00570 0.73 -0.0 586,307 - MPMX19_00570 0.73 -0.7 586,468 + MPMX19_00570 0.89 +0.2 586,468 + MPMX19_00570 0.89 +0.4 586,468 + MPMX19_00570 0.89 -1.2 586,468 + MPMX19_00570 0.89 -0.3 586,468 + MPMX19_00570 0.89 -0.2 586,468 + MPMX19_00570 0.89 +0.1 586,468 + MPMX19_00570 0.89 -0.0 586,469 - MPMX19_00570 0.90 -0.8 586,469 - MPMX19_00570 0.90 -0.7 586,469 - MPMX19_00570 0.90 -1.7 586,469 - MPMX19_00570 0.90 -0.8 586,469 - MPMX19_00570 0.90 +0.6 586,469 - MPMX19_00570 0.90 +1.0 586,469 - MPMX19_00570 0.90 -0.7 586,469 - MPMX19_00570 0.90 +0.1 586,469 - MPMX19_00570 0.90 -2.4 586,469 - MPMX19_00570 0.90 -0.9 586,525 + -0.2 586,525 + -1.5 586,525 + -0.5 586,525 + -0.4 586,525 + -1.0 586,525 + +0.2 586,525 + +0.1 586,525 + -0.3 586,526 - +0.6 586,526 - -0.6 586,526 - -1.6 586,526 - -0.9 586,526 - -0.5 586,526 - +0.2 586,526 - -0.8 586,570 + +0.6 586,617 + -0.3 586,617 + -0.5 586,617 + -0.7 586,617 + +0.3 586,617 + -0.3 586,617 + +0.7 586,617 + -0.7 586,617 + -1.6 586,617 + +0.2 586,618 - -2.1 586,618 - -1.7 586,618 - +1.5 586,618 - -1.0 586,618 - +0.3 586,618 - -1.4 586,618 - -0.9 586,618 - -1.0 586,618 - -0.7 586,618 - -1.2 586,618 - +0.2 586,618 - -1.0 586,618 - -0.6 586,618 - -0.6 586,618 - +1.2 586,618 - +0.2 586,653 + MPMX19_00571 0.13 +1.4 586,653 + MPMX19_00571 0.13 -1.0 586,653 + MPMX19_00571 0.13 -0.6 586,653 + MPMX19_00571 0.13 -0.5 586,653 + MPMX19_00571 0.13 +0.4 586,653 + MPMX19_00571 0.13 -1.6 586,653 + MPMX19_00571 0.13 +0.0 586,653 + MPMX19_00571 0.13 +0.4 586,653 + MPMX19_00571 0.13 -1.0 586,653 + MPMX19_00571 0.13 +0.7 586,653 + MPMX19_00571 0.13 +1.6 586,653 + MPMX19_00571 0.13 +0.5 586,653 + MPMX19_00571 0.13 +0.2 586,653 + MPMX19_00571 0.13 -2.7 586,654 - MPMX19_00571 0.13 +0.4 586,654 - MPMX19_00571 0.13 +0.4 586,654 - MPMX19_00571 0.13 -0.7 586,654 - MPMX19_00571 0.13 +0.8 586,654 - MPMX19_00571 0.13 -1.8 586,654 - MPMX19_00571 0.13 -2.1 586,654 - MPMX19_00571 0.13 -0.7 586,654 - MPMX19_00571 0.13 -0.8 586,654 - MPMX19_00571 0.13 +1.3 586,654 - MPMX19_00571 0.13 -0.1 586,654 - MPMX19_00571 0.13 -1.7 586,654 - MPMX19_00571 0.13 -0.3 586,654 - MPMX19_00571 0.13 -2.0 586,654 - MPMX19_00571 0.13 -0.2 586,654 - MPMX19_00571 0.13 +1.0 586,654 - MPMX19_00571 0.13 +1.1 586,654 - MPMX19_00571 0.13 +0.3 586,654 - MPMX19_00571 0.13 -1.1 586,654 - MPMX19_00571 0.13 +0.5 586,654 - MPMX19_00571 0.13 -1.1 586,654 - MPMX19_00571 0.13 -0.7 586,761 + MPMX19_00571 0.39 -1.2 586,883 + MPMX19_00571 0.69 +0.8 586,883 + MPMX19_00571 0.69 +1.1 586,883 + MPMX19_00571 0.69 -1.5 586,883 + MPMX19_00571 0.69 +1.8 586,883 + MPMX19_00571 0.69 -1.5 586,883 + MPMX19_00571 0.69 -1.8 586,883 + MPMX19_00571 0.69 -1.7 586,883 + MPMX19_00571 0.69 -0.2 586,883 + MPMX19_00571 0.69 -0.3 586,884 - MPMX19_00571 0.69 -0.3 586,884 - MPMX19_00571 0.69 -0.3 586,884 - MPMX19_00571 0.69 -0.1 586,884 - MPMX19_00571 0.69 -0.6 586,884 - MPMX19_00571 0.69 -0.4 586,911 + MPMX19_00571 0.75 -0.6 586,911 + MPMX19_00571 0.75 -1.6 586,911 + MPMX19_00571 0.75 +2.6 586,911 + MPMX19_00571 0.75 +0.4 586,911 + MPMX19_00571 0.75 -0.3 586,912 - MPMX19_00571 0.76 +0.2 586,912 - MPMX19_00571 0.76 -0.3 586,912 - MPMX19_00571 0.76 +0.8 586,912 - MPMX19_00571 0.76 -1.0 587,055 + -0.1 587,055 + +1.0 587,056 - -0.6 587,056 - +1.1 587,056 - -0.1 587,056 - -2.3 587,056 - +0.0 587,056 - +0.4 587,063 + -1.4 587,063 + -2.1 587,064 - +0.2 587,070 + -0.2 587,070 + -1.6 587,070 + +1.0 587,070 + +0.4 587,070 + +0.5 587,070 + -0.9 587,071 - -0.2 587,071 - +0.3 587,071 - -1.3 587,203 + +0.2 587,203 + -0.8 587,203 + -1.6 587,203 + -0.4 587,204 - +1.2 587,204 - -0.6 587,204 - -0.4 587,204 - +0.8 587,204 - -0.1 587,548 + MPMX19_00572 0.63 +2.3 587,548 + MPMX19_00572 0.63 +0.4 587,692 + MPMX19_00572 0.87 +1.8 587,692 + MPMX19_00572 0.87 +0.5 587,692 + MPMX19_00572 0.87 +0.5 587,692 + MPMX19_00572 0.87 -0.5 587,692 + MPMX19_00572 0.87 -1.2 587,692 + MPMX19_00572 0.87 -1.2 587,692 + MPMX19_00572 0.87 -0.8 587,692 + MPMX19_00572 0.87 -0.8 587,692 + MPMX19_00572 0.87 -0.7 587,692 + MPMX19_00572 0.87 -1.4 587,692 + MPMX19_00572 0.87 -0.2 587,693 - MPMX19_00572 0.87 +0.2 587,693 - MPMX19_00572 0.87 +0.1 587,693 - MPMX19_00572 0.87 -0.3 587,693 - MPMX19_00572 0.87 -0.4 587,693 - MPMX19_00572 0.87 -1.0 587,693 - MPMX19_00572 0.87 +0.2 587,693 - MPMX19_00572 0.87 +0.2 587,693 - MPMX19_00572 0.87 -1.2 587,872 + MPMX19_00573 0.12 +0.0 587,872 + MPMX19_00573 0.12 +0.3 587,872 + MPMX19_00573 0.12 -0.1 587,872 + MPMX19_00573 0.12 +0.0 587,872 + MPMX19_00573 0.12 -0.8 587,872 + MPMX19_00573 0.12 -0.8 587,872 + MPMX19_00573 0.12 -0.9 587,873 - MPMX19_00573 0.12 +1.5 587,873 - MPMX19_00573 0.12 -0.8 587,873 - MPMX19_00573 0.12 -0.7 587,873 - MPMX19_00573 0.12 -0.2 587,873 - MPMX19_00573 0.12 +0.3 587,873 - MPMX19_00573 0.12 -0.9 587,873 - MPMX19_00573 0.12 -1.7 587,873 - MPMX19_00573 0.12 +0.3 587,908 + MPMX19_00573 0.17 -0.6 587,908 + MPMX19_00573 0.17 +0.0 587,908 + MPMX19_00573 0.17 -1.0 587,908 + MPMX19_00573 0.17 -0.7 587,908 + MPMX19_00573 0.17 -0.7 587,908 + MPMX19_00573 0.17 -0.7 587,908 + MPMX19_00573 0.17 +0.6 587,908 + MPMX19_00573 0.17 -1.7 587,909 - MPMX19_00573 0.18 -0.6 587,909 - MPMX19_00573 0.18 +0.4 587,909 - MPMX19_00573 0.18 +0.3 587,909 - MPMX19_00573 0.18 +0.8 588,001 + MPMX19_00573 0.32 -2.0 588,001 + MPMX19_00573 0.32 -2.3 588,001 + MPMX19_00573 0.32 -0.1 588,002 - MPMX19_00573 0.32 +0.0
Or see this region's nucleotide sequence